Literature DB >> 24560151

Multiscale modeling and synaptic plasticity.

Upinder S Bhalla1.   

Abstract

Synaptic plasticity is a major convergence point for theory and computation, and the process of plasticity engages physiology, cell, and molecular biology. In its many manifestations, plasticity is at the hub of basic neuroscience questions about memory and development, as well as more medically themed questions of neural damage and recovery. As an important cellular locus of memory, synaptic plasticity has received a huge amount of experimental and theoretical attention. If computational models have tended to pick specific aspects of plasticity, such as STDP, and reduce them to an equation, some experimental studies are equally guilty of oversimplification each time they identify a new molecule and declare it to be the last word in plasticity and learning. Multiscale modeling begins with the acknowledgment that synaptic function spans many levels of signaling, and these are so tightly coupled that we risk losing essential features of plasticity if we focus exclusively on any one level. Despite the technical challenges and gaps in data for model specification, an increasing number of multiscale modeling studies have taken on key questions in plasticity. These have provided new insights, but importantly, they have opened new avenues for questioning. This review discusses a wide range of multiscale models in plasticity, including their technical landscape and their implications.
© 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bistability; Compartmental model; Homeostasis; Pattern decoding; Reaction–diffusion; Signaling network; Stochastic

Mesh:

Year:  2014        PMID: 24560151     DOI: 10.1016/B978-0-12-397897-4.00012-7

Source DB:  PubMed          Journal:  Prog Mol Biol Transl Sci        ISSN: 1877-1173            Impact factor:   3.622


  7 in total

Review 1.  Degeneracy in hippocampal physiology and plasticity.

Authors:  Rahul K Rathour; Rishikesh Narayanan
Journal:  Hippocampus       Date:  2019-07-13       Impact factor: 3.899

2.  Multirate method for co-simulation of electrical-chemical systems in multiscale modeling.

Authors:  Ekaterina Brocke; Mikael Djurfeldt; Upinder S Bhalla; Jeanette Hellgren Kotaleski; Michael Hanke
Journal:  J Comput Neurosci       Date:  2017-04-07       Impact factor: 1.621

Review 3.  Biophysical Psychiatry-How Computational Neuroscience Can Help to Understand the Complex Mechanisms of Mental Disorders.

Authors:  Tuomo Mäki-Marttunen; Tobias Kaufmann; Torbjørn Elvsåshagen; Anna Devor; Srdjan Djurovic; Lars T Westlye; Marja-Leena Linne; Marcella Rietschel; Dirk Schubert; Stefan Borgwardt; Magdalena Efrim-Budisteanu; Francesco Bettella; Geir Halnes; Espen Hagen; Solveig Næss; Torbjørn V Ness; Torgeir Moberget; Christoph Metzner; Andrew G Edwards; Marianne Fyhn; Anders M Dale; Gaute T Einevoll; Ole A Andreassen
Journal:  Front Psychiatry       Date:  2019-08-06       Impact factor: 4.157

4.  HillTau: A fast, compact abstraction for model reduction in biochemical signaling networks.

Authors:  Upinder S Bhalla
Journal:  PLoS Comput Biol       Date:  2021-11-29       Impact factor: 4.475

5.  Dominant role of adult neurogenesis-induced structural heterogeneities in driving plasticity heterogeneity in dentate gyrus granule cells.

Authors:  Sameera Shridhar; Poonam Mishra; Rishikesh Narayanan
Journal:  Hippocampus       Date:  2022-05-13       Impact factor: 3.753

6.  Efficient Integration of Coupled Electrical-Chemical Systems in Multiscale Neuronal Simulations.

Authors:  Ekaterina Brocke; Upinder S Bhalla; Mikael Djurfeldt; Jeanette Hellgren Kotaleski; Michael Hanke
Journal:  Front Comput Neurosci       Date:  2016-09-12       Impact factor: 2.380

Review 7.  Synaptic Clustering and Memory Formation.

Authors:  George Kastellakis; Panayiota Poirazi
Journal:  Front Mol Neurosci       Date:  2019-12-06       Impact factor: 5.639

  7 in total

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