Literature DB >> 24551881

Emergence of community-acquired adenovirus type 55 as a cause of community-onset pneumonia.

Bin Cao1, Guo-Hong Huang2, Zeng-Hui Pu3, Jiu-Xin Qu1, Xiao-Min Yu1, Zhen Zhu4, Jian-Ping Dong5, Yan Gao6, Yong-Xiang Zhang7, Xiao-Hui Li8, Jian-Hua Liu9, Hong Wang10, Qian Xu11, Hui Li1, Wenbo Xu4, Chen Wang12.   

Abstract

BACKGROUND: Since 2008, severe cases of emerging human adenovirus (HAdV) type 55 (HAdV-55) were reported sporadically in China. But no comparative studies had been conducted to discern the differences in epidemiologic and clinical abnormalities between HAdV-55 and other types (HAdV-7, HAdV-3, HAdV-14, HAdV-50, and HAdV-C).
METHODS: A multicenter surveillance study for adult and adolescent community-acquired pneumonia (CAP) was conducted prospectively in Beijing and Yan Tai between November 2010 and April 2012. A standardized data form was used to record clinical information. The viral DNA extracted from the clinical samples or adenovirus viral isolates was sequenced.
RESULTS: Among 969 cases, 48 (5%) were identified as adenovirus pneumonia. Six branches were clustered: HAdV-55 in 21, HAdV-7 in 11, HAdV-3 in nine, HAdV-14 in four, HAdV-50 in two, and HAdV-C in one. Most HAdV-55 cases were identified during February and March. All the hypervariable regions of the hexon genes of the 21 HAdV-55 strains were completely identical. Patients who had HAdV-55 were about 10 years older ( P = .027) and had higher pneumonia severity index scores ( P = .030) compared with those with other types (HAdV-7, HAdV-3, HAdV-14, HAdV-50, and HAdV-C). Systemic BP was also higher among patients in the HAdV-55 group ( P = .006). Unilateral or bilateral consolidations were the most common radiologic findings in both patients with HAdV-55 and those with other types (57.9% vs 36%). More than one-half of the patients were admitted to hospital; oxygen therapy was given to 29.2% of the 48 patients, and two needed mechanical ventilation.
CONCLUSIONS: HAdV-55 has established itself as a major pneumonia pathogen in the Chinese population, and further surveillance and monitoring of this agent as a cause of CAP is warranted.

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Year:  2014        PMID: 24551881      PMCID: PMC7094559          DOI: 10.1378/chest.13-1186

Source DB:  PubMed          Journal:  Chest        ISSN: 0012-3692            Impact factor:   9.410


Community-acquired pneumonia (CAP) refers to pneumonia acquired outside of hospital or long-term care facilities. The overall annual incidence of CAP ranges from five to 20 per 1,000 adults. Many microbial pathogens can cause CAP, and the role of viruses may have been underestimated thus far because of a lack of appropriate diagnostic methods.2, 3 Modern molecular techniques have revealed that respiratory viruses account for about 22% of adult CAP cases.4, 5, 6, 7, 8, 9, 10 The most common viruses are influenza, parainfluenza, respiratory syncytial virus, metapneumovirus, and adenovirus. We previously reported 18 sporadic CAP cases caused by human adenovirus (HAdV) from our single center between August 2008 and April 2011. Polymerase chain reaction (PCR) analysis using type-specific primers targeting the hexon gene revealed that they all belonged to species B (HAdV-11, HAdV-7, HAdV-3, and HAdV-14), and HAdV-11 accounted for 58.8% (10 of 17) of them. However, further genome sequence analysis proved that these 10 HAdV-11 strains were actually HAdV type 55 (HAdV-55). HAdV-55, an intertypic recombinant described originally as genome type 11a, was identified from an outbreak of acute respiratory tract infection in Shanxi Province, China, in 2006. It exhibited a neutralizing antigen epitope of HAdV-11 and the pathogenic properties of HAdV-14.13, 14 The whole-genome sequencing analysis showed that HAdV-55 had an HAdV-14 chassis with a partial HAdV-11 in the hexon gene.15, 16 For this reason, it was renamed HAdV-55. Our previous case series indicated that HAdV-55 apparently emerged in Beijing. Adenovirus 14 is an emerging agent of concern that has been causing outbreaks of pneumonia not just in China, but worldwide. Adenovirus 55, which is related to adenovirus 14, is now also emerging as an agent of concern. We investigated whether HAdV-55 has a different clinical profile from the profiles of other adenovirus types circulating in China.

Materials and Methods

Beijing Network for Adult CAP

The Beijing Network for Adult Community-Acquired Pneumonia (BNACAP), which consists of 11 general hospitals from nine different districts in Beijing and one teaching hospital in Yan Tai, is a clinic-based, multicenter, prospective surveillance system for adults and adolescents with CAP. Yan Tai is a city by the sea in Shan Dong Province, located about 770 km southeast of Beijing. The institutional review board of Beijing Chao-Yang Hospital approved the study (project approval number 10-KE-49). All patients gave their written informed consent.

Study Population

Between November 2010 and April 2012, all adolescent and adult patients (aged 14 years or older) from 12 general hospitals who met the inclusion criteria of CAP were prospectively enrolled during daytime 7 days a week. Patients with HIV infection or neutropenia, those receiving immunosuppressive chemotherapy or prednisone steroids equivalent to 15 mg/d for 30 days, pregnant or breast-feeding women, and those with known or suspected active TB were excluded.

Clinical Data Collection

Clinical information collected by investigators with a standardized data form included the following: age, sex, comorbidities, smoking history, vaccination against influenza and Streptococcus pneumoniae in the past year, symptoms (fever, cough, sputum, dyspnea, chest pain), GI symptoms (nausea, vomiting, diarrhea, and abdominal pain), and neurologic symptoms (headache, dizziness). Clinical signs (body temperature, heart rate, respiratory frequency, BP, and crackles) and treatments (antibiotics, antiviral therapy, or oxygen use) were also recorded. The pneumonia severity index (PSI) was used to assess the severity of illness on the day of enrollment. Symptoms and signs of all patients were followed up, either during their hospitalization or after discharge, until all symptoms disappeared. For outpatients, the same information was gathered. All the information collected from the patients was input into a computerized database.

Microbiologic Diagnostic Tests Undertaken

The nasal or throat swab specimens collected by the attending physicians were collected in 2-mL viral transport media, transported at 2°C to 8°C, and preserved at −80°C. The viral RNA was extracted from the clinical samples using a QIAamp RNA mini kit (QIAGEN). Following this, a commercially available Seeplex RV 15 ACE Detection kit (Seegene Inc), a multiplex, one-step, reverse transcriptase PCR, was used to screen for 15 different viruses as the cause of the respiratory illness. The kit included assays for adenovirus, influenza A and B viruses, human metapneumovirus, rhinovirus, respiratory syncytial virus (groups A and B), coronavirus (229E, NL63, OC43, and HKU1), parainfluenza virus (type 1, 2, 3, 4), bocavirus, and enterovirus. Blood cultures were performed for patients presenting with chills and shivering. If pleural fluid and sputum samples were available, Gram stain and culture were performed. Urinary antigen tests for Legionella pneumophila and S pneumoniae (Binax) were also performed on all urine specimens. Acute sera (1-3 days after onset) and convalescent sera (2-4 weeks after onset) were collected for testing of the antibody for HAdV or other respiratory viruses.

Criteria for Viral Pneumonia

Viral pneumonia was diagnosed based on one of the following criteria: (1) the presence of HAdV or other respiratory viruses detected in sputum or throat swab samples by molecular methods or (2) seroconversion, defined as a fourfold or greater increase in titers of antibodies to HAdV or other respiratory viruses.

Cell Culture and Virus Isolation

Nasal or throat swab specimens were inoculated onto Hep-2 cells and cultured in a maintenance medium for detection of a cytopathic effect (CPE). Cells were observed for CPE every 7 days. Cultures exhibiting adenovirus-like CPE were processed again to confirm the presence of the virus.

Extraction of Viral DNA and PCR

Viral DNA was extracted from the clinical samples and adenovirus viral isolates using a QIAamp DNA mini kit (QIAGEN). The hexon and fiber genes were both amplified using primers described previously by Zhu et al. PCR was performed with a 25-μL reaction mixture containing 2 μL of template DNA. Reaction conditions were determined as described previously by Zhu et al.

Sequence Analysis

The PCR products were purified (QIAGEN) and sequenced by a dye terminator method (BigDye Terminator, version 3.1, cycle sequencing kit; Applied Biosystems) with an ABI Prism 3100 genetic analyzer (Applied Biosystems). Sequence data were stored as standard chromatogram format files (.abl) and were analyzed with Sequencher software (version 4.0.5; Gene Codes Corp), the Basic Local Alignment Search Tool program (National Center for Biotechnology Information), BioEdit sequence alignment editor software (version 5.0.9; Tom Hall, North Carolina State University, Raleigh, North Carolina), and the Molecular Evolutionary Genetics Analysis (MEGA) program (Sudhir Kumar, Arizona State University, Phoenix, Arizona).

Statistical Analysis

Data analysis was performed using SPSS 15.0 (IBM). A two-tailed independent-samples t test or a Mann-Whitney U test (in the case of nonnormal distributions) was used to compare continuous variables between the two groups. For the categorical data, univariate analysis was carried out using the χ2 test or Fisher exact test. Significance was fixed at P < .05.

Results

Epidemiology

Between November 2010 and April 2012, 1,013 cases with CAP were enrolled in the BNACAP study. Forty-four cases were ruled out: In 30, no throat/nasal specimen was obtained, and clinical information was missing in 14. Therefore, 969 cases were available for the etiology study. Among them, 393 were positive for at least one pathogen: respiratory viruses in 262, Mycoplasma pneumoniae in 168, typical bacteria in 47, Mycobacterium tuberculosis in 15, and Legionella pneumoniae in four. Dual causes were found in 65 patients (e-Table 1).

Types of HAdV

Forty-eight patients (48 of 969 [5%]) were identified as having adenovirus pneumonia, and 26 of the 48 adenovirus-positive samples showed characteristic adenovirus-like CPE. Basic Local Alignment Search Tool analysis based on the hypervariable region of the hexon genes from all 48 adenovirus-positive samples was performed. Among the 48 samples, 21 (43.8%) were HAdV-55, 11 (22.9%) were HAdV-7, nine (18.8%) were HAdV-3, four (8.3%) were HAdV-14, two (4.2%) were HAdV-50, and one (2.1%) was HAdV-C. Most HAdVs were identified in February and March. No adenovirus was found in November or December (Fig 1 ). The type distribution was similar between Beijing and Yan Tai City (Table 1 ).
Figure 1

Epidemiologic distribution of different types of human adenoviruses. Most human adenovirus type 55 was identified during February and March, and it had epidemiologic characteristics similar to other types. No adenovirus pneumonia was found in November and December, the typical influenza season months.

Table 1

—Epidemiologic and Clinical Characteristics of Patients With CAP Caused by Adenoviruses (Comparison Between HAdV-55 and Other Types)

CharacteristicTotal (N = 48)HAdV-55 (n = 21)Other Types (n = 27)P Value
Age, y38.0 ± 18.544.7 ± 21.832.9 ± 13.8.027a
Male (female), No.33 (15)16 (5)17 (10).366
From Beijing29 (60.4)11 (52.4)18 (66.7).38
Underlying diseases5 (10.4)4 (19.1)1 (3.7).153
Current smokers15 (31.3)8 (38.1)7 (25.9).531
Influenza vaccination within 1 y, No.3121.0
Streptococcus pneumoniae vaccination within 1 y, No.1011.0
Antibiotics before enrollment, No.321319.555
Clinical features
 PSI score41.0 ± 22.849.1 ± 27.034.8 ± 16.8.030a
 Fever43 (89.6)19 (90.5)24 (88.9)1.0
 Tmax, °C39.3 ± 0.938.9 ± 0.739.4 ± 1.0.070
 Cough45 (93.8)20 (95.2)25 (92.6)1.0
 Sputum33 (68.8)16 (76.2)17 (63.0).366
 Purulent sputum18 (37.5)10 (47.6)8 (29.6).380
 Dyspnea9 (18.8)3 (14.3)6 (22.2).712
 Chest pain4 (8.3)1 (4.8)3 (11.1).621
 GI symptoms6 (12.5)4 (19.1)2 (7.4).383
 Neurologic symptoms6 (12.5)3 (14.3)3 (11.1)1.0
 Systemic BP, mm Hg118.3 ± 11.3123.4 ± 11.7114.5 ± 9.5.006a
 Heart rate, beats/min86.6 ± 11.584.2 ± 10.188.4 ± 12.4.208
 Respiratory rate, breaths/min20.1 ± 3.220.8 ± 4.219.6 ± 2.3.235
 Moist rales17 (35.4)8 (38.1)9 (33.3).377
 Dry rales2 (4.2)2 (9.5)0 (0).186
 Conjunctival congestion1 (2.1)0 (0)1 (3.7)1.0
 Rashes2 (4.2)1 (4.8)1 (3.7)1.0

Data are presented as mean ± SD or No. (%) unless indicated otherwise. CAP = community-acquired pneumonia; HAdV = human adenovirus; PSI = pneumonia severity index; Tmax = maximal temperature.

P < .05.

Epidemiologic distribution of different types of human adenoviruses. Most human adenovirus type 55 was identified during February and March, and it had epidemiologic characteristics similar to other types. No adenovirus pneumonia was found in November and December, the typical influenza season months. —Epidemiologic and Clinical Characteristics of Patients With CAP Caused by Adenoviruses (Comparison Between HAdV-55 and Other Types) Data are presented as mean ± SD or No. (%) unless indicated otherwise. CAP = community-acquired pneumonia; HAdV = human adenovirus; PSI = pneumonia severity index; Tmax = maximal temperature. P < .05.

Demographic Characteristics

The mean age of the 48 cases was 38 years; 12 of the 48 (25%) were aged > 50 years. Patients infected by HAdV-55 were about 10 years older than those infected by other types (P = .027). Men predominated over women, with a sex ratio of about 2:1. More patients infected by HAdV-55 had underlying diseases (19.7% vs 3.7%), although the difference was not significant (Table 1).

Clinical Features: Comparison Between HAdV-55 and Other Types

Most clinical symptoms and signs between patients infected by HAdV-55 and those infected by other types did not differ, except for PSI score and systemic BP; these were significantly higher in patients infected by HAdV-55 (P = .030 and P = .006, respectively) (Table 1). There was no difference in laboratory findings between HAdV-55-infected cases and those infected by other types (Table 2 ). Eight HAdV cases involved coinfections, including HAdV-55 with M pneumoniae in three, HAdV-55 with parainfluenza virus 3 and influenza virus B in one, HAdV-7 with M pneumoniae in one, HAdV-2 with respiratory syncytial virus A in one, HAdV-14 and parainfluenza virus 4 in one, and HAdV-3 with human coronavirus in one (Table 2).
Table 2

—Laboratory Findings and Chest Radiologic Characteristics of Patients With CAP Caused by Adenoviruses (Comparison Between HAdV-55 and Other Types)

CharacteristicTotal (N = 48)HAdV-55 (n = 21)Other Types (n = 27)P Value
WBC, 109/L7.19 ± 3.596.70 ± 3.317.33 ± 3.84.749
 Leukocyte < 4,000/mm3, %4 (8.3)2 (9.5)2 (7.4)1.0
 Leukocyte > 10,000/mm3, %8 (12.5)3 (14.3)4 (14.8).715
Neutrophil, %68.7 ± 12.369.9 ± 11.867.7 ± 12.9.553
Lymphocyte, %21.9 ± 9.320.9 ± 9.022.8 ± 9.8.484
Hemoglubulin, g/L141.4 ± 14.8139.0 ± 15.0143.3 ± 14.7.327
Platelet, 109/L186.9 ± 77.4196.2 ± 87.6179.7 ± 69.3.469
AST, μ/L26.5 (14-176)28 (14-130)26 (17-176).975
 AST > 40 μ/L10 (20.8)4 (19.1)6 (22.2)1.0
ALT, μ/L23 (6-122)26.5 (9-122)22 (6-109).511
 ALT > 40 μ/L8 (16.7)3 (14.3)5 (18.5)1.0
ALB, g/L36 (24.5-45.9)34.6 (30.7-43.7)36.4 (24.5-45.9).600
LDH, μ/L201 (120-794)193 (120-467)217 (129-794).771
 LDH > 250 μ/L13 (27.1)4 (19)9 (33.3).338
CK, μ/L47 (34-1994)70.5 (41-345)87 (34-1994).659
 CK > 200 μ/L5 (10.4)1 (4.8)4 (14.8).369
Tbil, μmol/L9.9 (4.3-39.4)11.8 (6.0-39.4)8.9 (4.3-38.4).063
 Tbil > 17.1 μmol/L8 (16.7)5 (23.8)3 (11.1).272
Cr, μmol/L68.9 (1.9-148.7)77.5 (1.9-148.7)62 (3.6-110.2).372
K, mmol/L3.92 ± 0.423.91 ± 0.463.93 ± 0.40.845
Na, mmol/L136.2 ± 4.1135.1 ± 4.2137.0 ± 3.9.102
Pao2, mm Hg83.4 ± 23.891.8 ± 31.377.1 ± 14.7.167
Paco2, mm Hg32.6 ± 6.532.3 ± 7.332.9 ± 6.1.827
ESR,a mm/h27 (8-70)32 (8-66)23.5 (9-70).212
CRP,b mg/L11.1 (2-147)11.1 (2-147)12 (2-104).728
 CRP > 20 mg/L10 (43.5)3 (25)7 (46.7)
PCT,c ng/mL0.32 (0.02-2.65)0.31 (0.05-0.87)0.32 (0.02-2.65).876
 PCT > 0.5 ng/mL4 (33.3)1 (20)3 (42.8)1.0
 PCT > 1 ng/mL2 (16.7)0 (0)2 (28.6)1.0
Chest radiographyd
 Bilateral involvement19 (39.6)9 (47.4)10 (40).761
 Consolidation20 (45.5)11 (57.9)9 (36).223
 Patchy infiltration18 (40.9)7 (36.8)11 (44).760
 Ground-grass opacity12 (27.3)5 (26.3)7 (28)1.0
 Pleural effusion3 (6.8)1 (5.3)2 (8)1.0
Coinfectionse8 (16.7)4 (19.1)4 (14.8).715

Data are presented as mean ± SD, No. (%), or median (range). ALB = albumin; ALT = alanine aminotransferase; AST = aspartate aminotransferase; CK = creatine kinase; Cr = creatinine; CRP = C reactive protein; ESR = erythrocyte sedimentation rate; LDH = lactate dehydrogenase; PCT = procalcitonin; Tbil = total bilirubin. See Table 1 legend for expansion of other abbreviations.

n = 27.

n = 23.

n = 12.

Total (N = 44), HAdV-55 (n = 19), and other types (n = 25).

Eight HAdV cases involved coinfections, including HAdV-55 with Mycoplasma pneumoniae in three, HAdV-55 with parainfluenza virus 3 and influenza virus B in one, HAdV-7 with Mycoplasma pneumoniae in one, HAdV-2 with respiratory syncytial virus A in one, HAdV-14 and parainfluenza virus 4 in one, and HAdV-3 with human coronavirus in one.

—Laboratory Findings and Chest Radiologic Characteristics of Patients With CAP Caused by Adenoviruses (Comparison Between HAdV-55 and Other Types) Data are presented as mean ± SD, No. (%), or median (range). ALB = albumin; ALT = alanine aminotransferase; AST = aspartate aminotransferase; CK = creatine kinase; Cr = creatinine; CRP = C reactive protein; ESR = erythrocyte sedimentation rate; LDH = lactate dehydrogenase; PCT = procalcitonin; Tbil = total bilirubin. See Table 1 legend for expansion of other abbreviations. n = 27. n = 23. n = 12. Total (N = 44), HAdV-55 (n = 19), and other types (n = 25). Eight HAdV cases involved coinfections, including HAdV-55 with Mycoplasma pneumoniae in three, HAdV-55 with parainfluenza virus 3 and influenza virus B in one, HAdV-7 with Mycoplasma pneumoniae in one, HAdV-2 with respiratory syncytial virus A in one, HAdV-14 and parainfluenza virus 4 in one, and HAdV-3 with human coronavirus in one. Forty percent of the patients had bilateral involvement on chest radiography (Table 2). Consolidation, patchy infiltrate, and ground-grass opacity were the most common findings in pneumonia caused by HAdV. Patients infected by HAdV-55 presented consolidation more commonly than did those infected by other types (57.9% vs 36%) (Fig 2 ), but the difference was not significant.
Figure 2

Radiographic findings of four patients infected with different types of adenoviruses. A, An 18-year-old young man infected with human adenovirus (HAdV)-14. Chest CT scan showed patchy infiltrate, ground-grass opacity, and partial consolidation of left lower lobe. B, A 14-year-old boy infected with HAdV-55. Chest CT scan showed consolidation and ground-grass opacity of left lower lobe. C, A 15-year-old girl infected with HAdV-7. Chest CT scan showed patchy infiltrate and ground-grass opacity of left lower lobe. D, A 24-year-old man infected with HAdV-3. Chest CT scan showed consolidation and ground-grass opacity of right lower lobe. ys = years old.

Radiographic findings of four patients infected with different types of adenoviruses. A, An 18-year-old young man infected with human adenovirus (HAdV)-14. Chest CT scan showed patchy infiltrate, ground-grass opacity, and partial consolidation of left lower lobe. B, A 14-year-old boy infected with HAdV-55. Chest CT scan showed consolidation and ground-grass opacity of left lower lobe. C, A 15-year-old girl infected with HAdV-7. Chest CT scan showed patchy infiltrate and ground-grass opacity of left lower lobe. D, A 24-year-old man infected with HAdV-3. Chest CT scan showed consolidation and ground-grass opacity of right lower lobe. ys = years old.

Complications, Management, and Prognosis of Patients With HAdV Pneumonia

More than one-half of the patients were admitted to hospital, but there was no difference between HAdV-55 and other types (Table 3 ). No case was proved to have a coinfection with bacteria, but coinfections with other respiratory viruses (25%) or M pneumoniae (12.5%) were common. Oxygen therapy was given to 29.2% of the patients, and only two needed mechanical ventilation. Antibiotics were given to all the patients, but only four were prescribed antiviral drugs (all from Beijing Chao-Yang Hospital). The clinical outcomes, including duration of fever and other respiratory symptoms, length of stay in hospital, and hospitalization expenses, were similar between HAdV-55 and other types (Table 3).
Table 3

—Complications, Management, and Prognosis of Patients With Adenoviral Pneumonia

CharacteristicsTotal (N = 48)HAdV-55 (n = 21)Other Types (n = 27)P Value
Hospitalization26 (54.2)11 (52.4)15 (55.6)1.0
Complications
 Coinfection with bacteria0 (0)0 (0)0 (0)
 Coinfection with Mycoplasma pneumoniae6 (12.5)3 (14.3)3 (11.1)1.0
 Coinfection with other respiratory virus12 (25)4 (19.1)7 (25.9).726
 ARDS2 (4.2)0 (0)2 (7.4).497
Management
 Oxygen therapy14 (29.2)7 (33.3)7 (25.9).750
 Mechanical ventilation2 (4.2)0 (0)2 (7.4).497
 Antibiotics48 (100)21 (100)27 (100)1.0
 Antivirala4 (8.3)4 (19.1)0 (0).031
Outcomes
 Duration of fever, d6 (2-20)7 (2-20)5 (2-9).201
 Duration of cough, d14.5 (4-37)14.5 (5-37)14 (4-28).810
 Duration of sputum, d13.5 (4-37)13.5 (4-37)12 (6-29)1.0
 Duration of dyspnea, d6 (1-21)6 (2-11)6 (1-21).905
 Duration of chest pain, d5 (5-7)5 (5-5)6 (5-7).667
 LOS in hospital, d7.5 (3-26)9 (5-21)6 (3-26).087
 Hospitalization expenses, RMB6,020 (1,200-49,947)7,608 (4,229-32,684)4,865 (1,200-49,947).234

Data are presented as No. (%) or median (range). LOS = length of stay; RMB = Chinese Yuan. See Table 1 legend for expansion of other abbreviations.

Three of the patients were prescribed acyclovir and the fourth was given ribavirin. All the patients were from Beijing Chao-Yang Hospital.

—Complications, Management, and Prognosis of Patients With Adenoviral Pneumonia Data are presented as No. (%) or median (range). LOS = length of stay; RMB = Chinese Yuan. See Table 1 legend for expansion of other abbreviations. Three of the patients were prescribed acyclovir and the fourth was given ribavirin. All the patients were from Beijing Chao-Yang Hospital.

Genome Sequence and Analysis of HAdV-55

A phylogenetic analysis was conducted based on the hypervariable region of the hexon gene to demonstrate the genetic relationship between HAdVs strains and the other seven HAdVs species (A-G); 47 of 48 strains belonged to HAdV species B and only one was HAdV-C (e-Fig 1A). Further partial hexon gene of HAdV strains were compared with the sequences of HAdV-B species in GenBank (e-Fig 1B); 21 of the 47 HAdV-Bs formed a dependent branch and revealed 100%, 96.7%, and 80% homologies with HAdV-55 (FJ643676), HAdV-11 (AF532578), and HAdV-14 (AY803294), respectively. Another phylogenetic tree was then conducted based on the partial fiber gene of the 15 HAdVs, hexon genes which were homologous to HAdV-55 (e-Fig 1C). The partial fiber gene had 99.8% to 100%, 99.4% to 99.5%, and 94.2% to 94.3% nucleotide identity with HAdV-55 (FJ643676), HAdV-14 (AY803294), and HAdV-11 (AF532578), respectively. (The amplification or sequencing of the other six strains failed, and the real-time PCR indicated that their hexon genes were HAdV-14 and their fiber genes were HAdV-14 [data not show]). All the hypervariable regions of the hexon genes (18281-19247nt, 967bp) of the 21 HAdV-55 strains were completely identical. Two of the 15 partial fiber genes (30689-31818nt, 1130bp) had one nucleotide difference from the others. The nucleotide sequences data from these 48 HAdVs were submitted to GenBank, and accession numbers were allocated as KC510700 to KC510747 (Hexon genes) and KC510748 to KC510762 (fiber genes).

Discussion

To our knowledge, this study is the first large cohort on the epidemiology and clinical features of CAP associated with HAdV-55, the emerging pathogen among immunocompetent adolescents and adults. Our data showed clearly that HAdV-55 has established itself as a major pneumonia pathogen in the Chinese population and that further surveillance and monitoring of this agent as a cause of CAP is warranted. HAdV has been recognized as an important viral cause of ARDS. The HAdV types most frequently associated with ARDSs include subspecies B1 HAdV-3, HAdV-7, and HAdV-21 and species E HAdV-4. The association of subspecies B2 HAdV (HAdV-11, HAdV-14, HAdV-34, HAdV-35) infection with ARDS has been rarely reported historically, with some of that documentation covering military trainees.15, 18, 19 In China, HAdV-3 and HAdV-7 were the most common types of pathogens.20, 21, 22 HAdV-11a associated with ARDSs can be traced back to the 1980s and it reemerged as an ARDS pathogen in 2006.12, 16 HAdV-55 (formerly known as HAdV-11a) was renamed HAdV-55 based on complete genomic sequence data, which clearly showed that HAdV-55 was a recombinant between the HAdV-11 and HAdV-14 ancestral strains. Adenovirus 14 is an emerging agent of concern that has been causing outbreaks of pneumonia not just in China but worldwide.24, 25 Tate et al reported an outbreak of severe respiratory disease associated with HAdV-14 in a US Air Force training facility. Five hundred fifty-one of 1,147 trainees (48%) with febrile respiratory illness were infected with HAdV-14; 23 trainees were hospitalized with pneumonia; four of those required admission to an ICU, and one died. Subsequently, outbreaks associated with HAdV-14 were reported in other states, such as Oregon, Alaska, and so forth.27, 28 Today, adenovirus 55, which is related to adenovirus 14, is also emerging as an agent of concern. Because of the absence of cases caused by other HAdV types, Vento et al could only compare pneumonia caused by HAdV-14 with HAdV-14-negative cases. Our study had the advantage of being able to compare the differences in clinical, laboratory, or radiographic abnormalities caused by HAdV-55 and other types of pathogens. We proved that patients with diseases due to HAdV-55 were about 10 years older (P = .027) and had higher PSI scores (P = .030) Our study has several limitations. First, our case series mainly represents the relatively mild and moderate end of the disease. We believe a wider surveillance study is needed to evaluate the spectrum of the disease caused by this emerging pathogen in an affected area in China. In addition, virus isolates were typed only by amplification and sequencing of the hexon gene, and no seroneutralization was performed. More laboratory tests should be carried out to understand the genomics and pathogenic characteristics.

Conclusions

In conclusion, our data provide new insight into the epidemiology of HAdV-55 infection in China. Patients with HAdV-55 infection were about 10 years older and had higher PSI scores than did patients infected by other types (HAdV-3, HAdV-7, HAdV-14). Furthermore, because it is difficult to discern HAdV pneumonia from clinical symptoms and signs, viral cause determination and a good surveillance system are important.
  27 in total

1.  Infectious Diseases Society of America/American Thoracic Society consensus guidelines on the management of community-acquired pneumonia in adults.

Authors:  Lionel A Mandell; Richard G Wunderink; Antonio Anzueto; John G Bartlett; G Douglas Campbell; Nathan C Dean; Scott F Dowell; Thomas M File; Daniel M Musher; Michael S Niederman; Antonio Torres; Cynthia G Whitney
Journal:  Clin Infect Dis       Date:  2007-03-01       Impact factor: 9.079

2.  Abrupt emergence of diverse species B adenoviruses at US military recruit training centers.

Authors:  David Metzgar; Miguel Osuna; Adriana E Kajon; Anthony W Hawksworth; Marina Irvine; Kevin L Russell
Journal:  J Infect Dis       Date:  2007-10-31       Impact factor: 5.226

3.  Outbreak of febrile respiratory illness associated with adenovirus 11a infection in a Singapore military training cAMP.

Authors:  Adriana E Kajon; Laura M Dickson; David Metzgar; Huo-Shu Houng; Vernon Lee; Boon-Huan Tan
Journal:  J Clin Microbiol       Date:  2010-02-03       Impact factor: 5.948

4.  Outbreak of severe respiratory disease associated with emergent human adenovirus serotype 14 at a US air force training facility in 2007.

Authors:  Jacqueline E Tate; Michel L Bunning; Lisa Lott; Xiaoyan Lu; John Su; David Metzgar; Lorie Brosch; Catherine A Panozzo; Vincent C Marconi; Dennis J Faix; Mila Prill; Brian Johnson; Dean D Erdman; Vincent Fonseca; Larry J Anderson; Marc-Alain Widdowson
Journal:  J Infect Dis       Date:  2009-05-15       Impact factor: 5.226

5.  Genetic relationship between thirteen genome types of adenovirus 11, 34, and 35 with different tropisms.

Authors:  Q G Li; J Hambraeus; G Wadell
Journal:  Intervirology       Date:  1991       Impact factor: 1.763

6.  Genomic analyses of recombinant adenovirus type 11a in China.

Authors:  Zhaohui Yang; Zhen Zhu; Liuying Tang; Li Wang; Xiaojuan Tan; Pengbo Yu; Yong Zhang; Xiaoping Tian; Jingjun Wang; Yan Zhang; Dexin Li; Wenbo Xu
Journal:  J Clin Microbiol       Date:  2009-08-12       Impact factor: 5.948

7.  Genome sequence of human adenovirus type 55, a re-emergent acute respiratory disease pathogen in China.

Authors:  Qiwei Zhang; Donald Seto; Bin Cao; Suhui Zhao; Chengsong Wan
Journal:  J Virol       Date:  2012-11       Impact factor: 5.103

8.  Severe community-acquired pneumonia caused by adenovirus type 11 in immunocompetent adults in Beijing.

Authors:  Li Gu; Zhenjia Liu; Xiaoli Li; Jiuxin Qu; Wenda Guan; Yingmei Liu; Shufan Song; Xiaomin Yu; Bin Cao
Journal:  J Clin Virol       Date:  2012-05-18       Impact factor: 3.168

9.  Respiratory viruses in adults with community-acquired pneumonia.

Authors:  David Lieberman; Avi Shimoni; Yonat Shemer-Avni; Ayelet Keren-Naos; Rachel Shtainberg; Devora Lieberman
Journal:  Chest       Date:  2010-04-02       Impact factor: 9.410

10.  Viral infection in adults hospitalized with community-acquired pneumonia: prevalence, pathogens, and presentation.

Authors:  Jennie Johnstone; Sumit R Majumdar; Julie D Fox; Thomas J Marrie
Journal:  Chest       Date:  2008-08-08       Impact factor: 9.410

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1.  Prevalence of neutralizing antibodies to common respiratory viruses in intravenous immunoglobulin and in healthy donors in southern China.

Authors:  Xingui Tian; Zaixue Jiang; Qiang Ma; Qian Liu; Xiaomei Lu; Wenkuan Liu; Xiaohong Liao; Rong Zhou; Xiaobo Su; Qingming Luo
Journal:  J Thorac Dis       Date:  2016-05       Impact factor: 2.895

Review 2.  Vaccine development for human mastadenovirus.

Authors:  Shiying Chen; Xingui Tian
Journal:  J Thorac Dis       Date:  2018-07       Impact factor: 2.895

3.  Severe adenovirus community-acquired pneumonia in immunocompetent adults: chest radiographic and CT findings.

Authors:  Dingyu Tan; Yangyang Fu; Jun Xu; Zhiwei Wang; Jian Cao; Joseph Walline; Huadong Zhu; Xuezhong Yu
Journal:  J Thorac Dis       Date:  2016-05       Impact factor: 2.895

4.  Human Desmoglein-2 and Human CD46 Mediate Human Adenovirus Type 55 Infection, but Human Desmoglein-2 Plays the Major Roles.

Authors:  Ying Feng; Changhua Yi; Xinglong Liu; Linbing Qu; Wan Su; Tao Shu; Xuehua Zheng; Xianmiao Ye; Jia Luo; Mingli Hao; Xikui Sun; Liang Li; Xiaolin Liu; Chenchen Yang; Suhua Guan; Ling Chen; Liqiang Feng
Journal:  J Virol       Date:  2020-08-17       Impact factor: 5.103

Review 5.  Severe Respiratory Viral Infections: New Evidence and Changing Paradigms.

Authors:  James M Walter; Richard G Wunderink
Journal:  Infect Dis Clin North Am       Date:  2017-07-05       Impact factor: 5.982

Review 6.  Current status of human adenovirus infection in China.

Authors:  Nai-Ying Mao; Zhen Zhu; Yan Zhang; Wen-Bo Xu
Journal:  World J Pediatr       Date:  2022-06-18       Impact factor: 9.186

7.  Febrile Respiratory Illness Associated with Human Adenovirus Type 55 in South Korea Military, 2014-2016

Authors:  Hongseok Yoo; Se Hun Gu; Jaehun Jung; Dong Hyun Song; Changgyo Yoon; Duck Jin Hong; Eun Young Lee; Woong Seog; Il-Ung Hwang; Daesang Lee; Seong Tae Jeong; Kyungmin Huh
Journal:  Emerg Infect Dis       Date:  2017-06       Impact factor: 6.883

8.  Clinical data analysis of 19 cases of community-acquired adenovirus pneumonia in immunocompetent adults.

Authors:  Hong-Xia Yu; Mao-Mao Zhao; Zeng-Hui Pu; Yun-Qiang Wang; Yan Liu
Journal:  Int J Clin Exp Med       Date:  2015-10-15

9.  Outcomes of early administration of cidofovir in non-immunocompromised patients with severe adenovirus pneumonia.

Authors:  Se Jin Kim; Kang Kim; Sung Bum Park; Duck Jin Hong; Byung Woo Jhun
Journal:  PLoS One       Date:  2015-04-15       Impact factor: 3.240

10.  Desmoglein 2 (DSG2) Is A Receptor of Human Adenovirus Type 55 Causing Adult Severe Community-Acquired Pneumonia.

Authors:  Jing Zhang; Kui Ma; Xiangyu Wang; Yinbo Jiang; Shan Zhao; Junxian Ou; Wendong Lan; Wenyi Guan; Xiaowei Wu; Heping Zheng; Bin Yang; Chengsong Wan; Wei Zhao; Jianguo Wu; Qiwei Zhang
Journal:  Virol Sin       Date:  2021-07-05       Impact factor: 6.947

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