| Literature DB >> 24551503 |
Sherine N Khattab1, Ramon Subirós-Funosas2, Ayman El-Faham3, Fernando Albericio4.
Abstract
Peptide-bond formation is a pivotal process in the synthesis of peptide oligomers. Among the various coupling methodologies described, carbodiimides combine strong acylation potency and smooth reaction conditions, and they are commonly used in the presence of N-hydroxylamine additives. In recent years, acidic oxime templates, mainly ethyl 2-cyano-2-(hydroxyimino) acetate (Oxyma), have emerged as highly reactive alternatives to the classic and explosive-prone benzotriazolic additives, 1-hydroxybenzotriazole (HOBt) and 1-hydroxy-7-azabenzotriazole (HOAt). However, to achieve certain biochemical targets, less reactive species, such as N-hydroxysuccinimide (HOSu) esters, are often required to obtain stability under aqueous conditions. In the present study, we report on a new family of water-soluble N-alkyl-cyanoacetamido oximes, most of which have proven useful in the construction of active carbonates for the introduction of fluorenylmethoxycarbonyl (Fmoc) with minimal impact of dipeptide impurities. We performed a direct comparison of these new N-alkyl-cyanoacetamido oximes with HOSu in order to evaluate their capacity to retain optical purity and their coupling efficiency in the assembly of bulky residues.Entities:
Keywords: N-hydroxysuccinimides; additives; oximes; peptide syntheses; peptide-bond formations
Year: 2012 PMID: 24551503 PMCID: PMC3922453 DOI: 10.1002/open.201200012
Source DB: PubMed Journal: ChemistryOpen ISSN: 2191-1363 Impact factor: 2.911
Figure 1Structure of N-hydroxylamines currently available for use as additives to carbodiimides.
Figure 2Structure of the N-alkyl-cyanoacetamido oximes proposed herein.
Scheme 1Two-step synthetic route to cyanooxime, DmOx (9). Reagents and conditions: a) ethyl cyanoacetate (10), aq Me2NH (40 %), 70 °C; b) Intermediate 11, NaNO2, MeOH/H2O, 2 h at RT.
Figure 3Peptide models used to test the reduction of epimerization induced by N-alkyl-cyanoacetamido oximes.
Yield and epimerization during the formation of Z-Phg-Pro-NH2 (12) using additives 3–9 (solution phase synthesis)[a]
| Entry | Coupling Reagent | Yield [%] | |
|---|---|---|---|
| 1 | DIC/Oxyma ( | 89.9 | 1.0 |
| 2 | DIC/HOSu ( | 70.3 | 32.7 |
| 3 | DIC/MorOx ( | 88.4 | 5.7 |
| 4 | DIC/PipOx ( | 86.8 | 10.7 |
| 5 | DIC/AmOx ( | 81.4 | 3.0 |
| 6 | DIC/ | 92.1 | 3.8 |
| 7 | DIC/DmOx ( | 93.4 | 8.3 |
Couplings were performed without pre-activation in DMF at RT.
The ll and dl epimers of this peptide model have been described in the literature.29a Retention times (tR) for each epimer were identified after co-injection with a pure ll sample.
Results are extracted from Ref. [17].
Yield and epimerization during the [2+1] formation of Z-Phe-Val-Pro-NH2 (13) using additives 3–9 (solution phase synthesis).[a]
| Entry | Coupling Reagent | Yield [%] | |
|---|---|---|---|
| 1 | DIC/Oxyma ( | 89.8 | 12.8 |
| 2 | DIC/HOSu ( | 73.1 | 24.7 |
| 3 | DIC/MorOx ( | 80.5 | 13.2 |
| 4 | DIC/PipOx ( | 71.5 | 32.6 |
| 5 | DIC/AmOx ( | 66.7 | 14.8 |
| 6 | DIC/ | 83.6 | 18.4 |
| 7 | DIC/DmOx ( | 79.5 | 17.0 |
Couplings were performed without pre-activation in DMF at RT.
The lll and ldl epimers of this tripeptide model have been described in the literature.29b Retention times (tR) for each epimer were identified after co-injection with a pure sample.
Yield and epimerization during the [2+1] formation of Z-Gly-Phe-Pro-NH2 (14) using additives 3–9 (solution phase synthesis)[a]
| Entry | Coupling Reagent | Yield [%] | |
|---|---|---|---|
| 1 | DIC/Oxyma ( | 90.2 | 2.7 |
| 2 | DIC/HOSu ( | 80.4 | 9.0 |
| 3 | DIC/MorOx ( | 88.3 | 8.0 |
| 4 | DIC/PipOx ( | 86.6 | 7.6 |
| 5 | DIC/AmOx ( | 88.9 | 4.3 |
| 6 | DIC/ | 87.6 | 8.3 |
| 7 | DIC/DmOx ( | 87.9 | 5.4 |
Couplings were conducted without pre-activation in DMF at RT.
[b] The lll and ldl epimers of this tripeptide model have been described in the literature.29b Retention times (tR) for each epimer were identified after co-injection with a pure sample.
Figure 4Aib-enkephaline pentapeptide (15) used as coupling efficiency model to test N-alkyl-cyanoacetamido oximes 5–9.
Percentage of tetrapeptide des-Aib (H-Tyr-Aib-Phe-Leu-NH2) during solid-phase assembly of pentapeptide 15 (H-Tyr-Aib-Aib-Phe-Leu-NH2)[a]
| Entry | Coupling Reagent | des-Aib [%] | |
|---|---|---|---|
| 1 | DIC/Oxyma ( | 46.5 | 53.5 |
| 2 | DIC/HOSu ( | 0 | 12.2 |
| 3 | DIC/MorOx ( | 13.6 | 75.8 |
| 4 | DIC/PipOx ( | 10.9 | 78.0 |
| 5 | DIC/AmOx ( | 18.9 | 73.1 |
| 6 | DIC/ | 15.4 | 79.9 |
| 7 | DIC/DmOx ( | 31.3 | 68.7 |
10 min pre-activation and 30 min coupling times were generally applied, except for Aib-Aib (30 min double coupling).
Deletion tetrapeptide des-Aib was identified by peak overlap in reversed-phase HPLC with an authentic sample obtained in solid-phase.
Results are taken from Ref. [17].