Literature DB >> 24551389

Automatically extracting clinically useful sentences from UpToDate to support clinicians' information needs.

Rashmi Mishra1, Guilherme Del Fiol1, Halil Kilicoglu2, Siddhartha Jonnalagadda3, Marcelo Fiszman2.   

Abstract

UNLABELLED: Clinicians raise several information needs in the course of care. Most of these needs can be met by online health knowledge resources such as UpToDate. However, finding relevant information in these resources often requires significant time and cognitive effort.
OBJECTIVE: To design and assess algorithms for extracting from UpToDate the sentences that represent the most clinically useful information for patient care decision making.
METHODS: We developed algorithms based on semantic predications extracted with SemRep, a semantic natural language processing parser. Two algorithms were compared against a gold standard composed of UpToDate sentences rated in terms of clinical usefulness.
RESULTS: Clinically useful sentences were strongly correlated with predication frequency (correlation= 0.95). The two algorithms did not differ in terms of top ten precision (53% vs. 49%; p=0.06).
CONCLUSIONS: Semantic predications may serve as the basis for extracting clinically useful sentences. Future research is needed to improve the algorithms.

Entities:  

Mesh:

Year:  2013        PMID: 24551389      PMCID: PMC3900230     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  12 in total

1.  The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text.

Authors:  Thomas C Rindflesch; Marcelo Fiszman
Journal:  J Biomed Inform       Date:  2003-12       Impact factor: 6.317

2.  The Unified Medical Language System (UMLS): integrating biomedical terminology.

Authors:  Olivier Bodenreider
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  Answering physicians' clinical questions: obstacles and potential solutions.

Authors:  John W Ely; Jerome A Osheroff; M Lee Chambliss; Mark H Ebell; Marcy E Rosenbaum
Journal:  J Am Med Inform Assoc       Date:  2004-11-23       Impact factor: 4.497

4.  Using wireless handheld computers to seek information at the point of care: an evaluation by clinicians.

Authors:  Susan E Hauser; Dina Demner-Fushman; Joshua L Jacobs; Susanne M Humphrey; Glenn Ford; George R Thoma
Journal:  J Am Med Inform Assoc       Date:  2007-08-21       Impact factor: 4.497

5.  Automatic summarization of MEDLINE citations for evidence-based medical treatment: a topic-oriented evaluation.

Authors:  Marcelo Fiszman; Dina Demner-Fushman; Halil Kilicoglu; Thomas C Rindflesch
Journal:  J Biomed Inform       Date:  2008-11-05       Impact factor: 6.317

6.  FigSum: automatically generating structured text summaries for figures in biomedical literature.

Authors:  Shashank Agarwal; Hong Yu
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

7.  Automatically extracting sentences from Medline citations to support clinicians' information needs.

Authors:  Siddhartha Reddy Jonnalagadda; Guilherme Del Fiol; Richard Medlin; Charlene Weir; Marcelo Fiszman; Javed Mostafa; Hongfang Liu
Journal:  J Am Med Inform Assoc       Date:  2012-10-25       Impact factor: 4.497

8.  Information needs in office practice: are they being met?

Authors:  D G Covell; G C Uman; P R Manning
Journal:  Ann Intern Med       Date:  1985-10       Impact factor: 25.391

9.  MEDRank: using graph-based concept ranking to index biomedical texts.

Authors:  Jorge R Herskovic; Trevor Cohen; Devika Subramanian; M Sriram Iyengar; Jack W Smith; Elmer V Bernstam
Journal:  Int J Med Inform       Date:  2011-03-25       Impact factor: 4.046

10.  SemMedDB: a PubMed-scale repository of biomedical semantic predications.

Authors:  Halil Kilicoglu; Dongwook Shin; Marcelo Fiszman; Graciela Rosemblat; Thomas C Rindflesch
Journal:  Bioinformatics       Date:  2012-10-08       Impact factor: 6.937

View more
  4 in total

1.  Classification of Clinically Useful Sentences in MEDLINE.

Authors:  Mohammad Amin Morid; Siddhartha Jonnalagadda; Marcelo Fiszman; Kalpana Raja; Guilherme Del Fiol
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

2.  Formative evaluation of a patient-specific clinical knowledge summarization tool.

Authors:  Guilherme Del Fiol; Javed Mostafa; Dongqiuye Pu; Richard Medlin; Stacey Slager; Siddhartha R Jonnalagadda; Charlene R Weir
Journal:  Int J Med Inform       Date:  2015-11-21       Impact factor: 4.046

3.  Classification of clinically useful sentences in clinical evidence resources.

Authors:  Mohammad Amin Morid; Marcelo Fiszman; Kalpana Raja; Siddhartha R Jonnalagadda; Guilherme Del Fiol
Journal:  J Biomed Inform       Date:  2016-01-13       Impact factor: 6.317

4.  CERC: an interactive content extraction, recognition, and construction tool for clinical and biomedical text.

Authors:  Eva K Lee; Karan Uppal
Journal:  BMC Med Inform Decis Mak       Date:  2020-12-15       Impact factor: 2.796

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.