Literature DB >> 24551369

Linked data and online classifications to organise mined patterns in patient data.

Nicolas Jay1, Mathieu d'Aquin2.   

Abstract

In this paper, we investigate the use of web data resources in medicine, especially through medical classifications made available using the principles of Linked Data, to support the interpretation of patterns mined from patient care trajectories. Interpreting such patterns is naturally a challenge for an analyst, as it requires going through large amounts of results and access to sufficient background knowledge. We employ linked data, especially as exposed through the BioPortal system, to create a navigation structure within the patterns obtained form sequential pattern mining. We show how this approach provides a flexible way to explore data about trajectories of diagnoses and treatments according to different medical classifications.

Entities:  

Mesh:

Year:  2013        PMID: 24551369      PMCID: PMC3900210     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  13 in total

Review 1.  The practical impact of ontologies on biomedical informatics.

Authors:  J J Cimino; X Zhu
Journal:  Yearb Med Inform       Date:  2006

2.  An Ontology driven collaborative development for biomedical terminologies: from the French CCAM to the Australian ICHI coding system.

Authors:  Jean M Rodrigues; Alan Rector; Pieter Zanstra; Robert Baud; Kerry Innes; Jeremy Rogers; Anne M Rassinoux; Stefan Schulz; Beatrice Trombert Paviot; Huib ten Napel; Lucienne Clavel; Egbert van der Haring; Ceu Mateus
Journal:  Stud Health Technol Inform       Date:  2006

3.  The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.

Authors:  Barry Smith; Michael Ashburner; Cornelius Rosse; Jonathan Bard; William Bug; Werner Ceusters; Louis J Goldberg; Karen Eilbeck; Amelia Ireland; Christopher J Mungall; Neocles Leontis; Philippe Rocca-Serra; Alan Ruttenberg; Susanna-Assunta Sansone; Richard H Scheuermann; Nigam Shah; Patricia L Whetzel; Suzanna Lewis
Journal:  Nat Biotechnol       Date:  2007-11       Impact factor: 54.908

4.  Protein classification using sequential pattern mining.

Authors:  Themis P Exarchos; Costas Papaloukas; Christos Lampros; Dimitrios I Fotiadis
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2006

Review 5.  Accessing and integrating data and knowledge for biomedical research.

Authors:  A Burgun; O Bodenreider
Journal:  Yearb Med Inform       Date:  2008

6.  Classification and sequential pattern analysis for improving managerial efficiency and providing better medical service in public healthcare centers.

Authors:  Keunho Choi; Sukhoon Chung; Hyunsill Rhee; Yongmoo Suh
Journal:  Healthc Inform Res       Date:  2010-06-30

7.  Health multi-terminology portal: a semantic added-value for patient safety.

Authors:  Julien Grosjean; Tayeb Merabti; Badisse Dahamna; Ivan Kergourlay; Benoit Thirion; Lina F Soualmia; Stefan J Darmoni
Journal:  Stud Health Technol Inform       Date:  2011

8.  Mining the human phenome using semantic web technologies: a case study for Type 2 Diabetes.

Authors:  Jyotishman Pathak; Richard C Kiefer; Suzette J Bielinski; Christopher G Chute
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

Review 9.  Data mining in healthcare and biomedicine: a survey of the literature.

Authors:  Illhoi Yoo; Patricia Alafaireet; Miroslav Marinov; Keila Pena-Hernandez; Rajitha Gopidi; Jia-Fu Chang; Lei Hua
Journal:  J Med Syst       Date:  2011-05-03       Impact factor: 4.460

10.  BioPortal: ontologies and integrated data resources at the click of a mouse.

Authors:  Natalya F Noy; Nigam H Shah; Patricia L Whetzel; Benjamin Dai; Michael Dorf; Nicholas Griffith; Clement Jonquet; Daniel L Rubin; Margaret-Anne Storey; Christopher G Chute; Mark A Musen
Journal:  Nucleic Acids Res       Date:  2009-05-29       Impact factor: 16.971

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