| Literature DB >> 24550920 |
Anca Dorhoi1, Marco Iannaccone1, Jeroen Maertzdorf1, Geraldine Nouailles1, January Weiner1, Stefan H E Kaufmann1.
Abstract
Tuberculosis (TB) is a major health issue globally. Although typically the disease can be cured by chemotherapy in all age groups, and prevented in part in newborn by vaccination, general consensus exists that development of novel intervention measures requires better understanding of disease mechanisms. Human TB is characterized by polarity between host resistance as seen in 2 billion individuals with latent TB infection and susceptibility occurring in 9 million individuals who develop active TB disease every year. Experimental animal models often do not reflect this polarity adequately, calling for a reverse translational approach. Gene expression profiling has allowed identification of biomarkers that discriminate between latent infection and active disease. Functional analysis of most relevant markers in experimental animal models can help to better understand mechanisms driving disease progression. We have embarked on in-depth characterization of candidate markers of pathology and protection hereby harnessing mouse mutants with defined gene deficiencies. Analysis of mutants deficient in miR-223 expression and CXCL5 production allowed elucidation of relevant pathogenic mechanisms. Intriguingly, these deficiencies were linked to aberrant neutrophil activities. Our findings point to a detrimental potential of neutrophils in TB. Reciprocally, measures that control neutrophils should be leveraged for amelioration of TB in adjunct to chemotherapy.Entities:
Keywords: biomarker; chemokine; inflammation; interferon; microRNA; neutrophil; tuberculosis
Year: 2014 PMID: 24550920 PMCID: PMC3913996 DOI: 10.3389/fimmu.2014.00036
Source DB: PubMed Journal: Front Immunol ISSN: 1664-3224 Impact factor: 7.561
Figure 1Iterative cycle between translation and reverse translation in TB research and development. Canonical science frequently follows translational pathways from basic research to clinical studies (pro for basic research as starting point: hypothesis-driven proof of principle; con: dissociation of hypothesis from real-life). In this way, proof of principle derived from basic research can be validated under real-life conditions. Increasingly, reverse translation of clinical observations into hypothesis generation is pursued (pro for clinical studies as starting point: reality-driven hypothesis generation; con: generation of questions without direct answers). Clinical studies and trials generate “real-life” data, which are subsequently tested and verified by basic research. This allows for validation of reality-driven questions raised in clinical studies. An iterative correlation of hypothesis-driven and data-driven research in the clinical context, with the help of computational analyses, will accelerate both generation of knowledge and design of novel intervention measures.
Genes identified as differentially expressed in TB compared to healthy controls and reported as a part of a biosignature.
| Interferon signaling | Pattern recognition receptor and inflammation | Neutrophil response | Adaptive immunity | Chemokines and receptors | Complement system | Fc receptors | Other |
|---|---|---|---|---|---|---|---|
| IFIT2; 3 (s) | TLR5 (s | MPO (p) | BATF2 (s) | CXCR3 (s) | C1QA | CD64 (s; p; l) | RAC1 (s) |
| IFI44L (s) | CD32 (s) | CTSG (s | CD4 | CXCR4 (s) | C1QB (s | CD32 (s) | SEC14 (s) |
| GBP1; 2; 5; 6 (s) | IRAK1; 3; 4 (s) | LTF (s; p) | CD40 (s) | CXCR5 (s) | C2 | KLF2 (s | |
| OAS1 (s | ETS2 (s) | BPI (s | IGHM (s) | CXCL9 (s) | SERPING1 (s) | HIF1A (s) | |
| SOCS1 (s) | NAMPT (s; p) | DEFA4 (p) | IGHD (s) | CXCL10 (s) | HLTF (s) | ||
| SOCS5 (s) | CD163 (s; l) | NCF1 (s) | IGJ | CXCL14 (s | PSMA 1–7 (s) | ||
| TGFB1 (s) | LCN2 | CCL23 (s) | UCN2 (s) | ||||
| TRAF5 | MMP9 (s; l; p) | SMARCD3 (s) | |||||
| MMP8 (p) | FOXB1 | ||||||
| FOXC2 | |||||||
| TIMP (s) | |||||||
| RAB13 (s | |||||||
| RAB33 (s) | |||||||
| CASP8 (s) |
Annotations in brackets denote whether a gene has also been reported as differentially expressed in another disease condition by Maertzdorf et al. (.
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Candidate microRNA biomarkers for active TB.
| Sample type | microRNA | Reference |
|---|---|---|
| Monocytes | hsa-mir-582-5p | ( |
| CD4+ T cells | has-miR-21, has-miR-26a, has-miR-29a, and miR-142-3p | ( |
| Serum | hsa-miR-361-5p, hsa-miR-889, and miR-576-3p | ( |
| PBMCs | hsa-miR-146a and has-miR-424 | ( |
| Sputum | hsa-mir-3179, has-miR-147, and hsa-miR-19b-2-5p | ( |
| Peripheral whole blood | hsa-miR-144 | ( |
| PBMCs | hsa-miR-155 and hsa-miR-155-3p | ( |
| PBMCs | hsa-miR-144, hsa-miR-365, hsa-miR-424, and hsa-miR-451 | ( |
| Serum | hsa-miR-29a | ( |