Literature DB >> 24547683

Pnicogen bonds between X═PH3 (X = O, S, NH, CH2) and phosphorus and nitrogen bases.

Ibon Alkorta1, Goar Sánchez-Sanz, José Elguero, Janet E Del Bene.   

Abstract

Ab initio MP2/aug'-cc-pVTZ calculations have been carried out to investigate the pnicogen bonded complexes formed between the acids O═PH3, S═PH3, HN═PH3, and H2C═PH3 and the bases NH3, NCH, N2, PH3, and PCH. All nitrogen and phosphorus bases form complexes in which the bases are lone pair electron donors. The binding energies of complexes involving the stronger bases NH3, NCH, and PH3 differentiate among the acids, but the binding energies of complexes with the weaker bases do not. These complexes are stabilized by charge transfer from the lone pair orbital of N or P to the σ*P═A orbital of X═PH3, where A is the atom of X directly bonded to P. PCH also forms complexes with the X═PH3 acids as a π electron donor to the σ*P═A orbital. The binding energies and the charge-transfer energies of the π complexes are greater than those of the complexes in which PCH is a lone pair donor. Whether the positive charge on P increases, decreases, or remains the same upon complex formation, the chemical shieldings of (31)P decrease in the complexes relative to the corresponding monomers. (1p)J(P-N) and (1p)J(P-P) values correlate best with the corresponding P-N and P-P distances as a function of the nature of the base. (1)J(P-A) values do not correlate with P-A distances. Rather, the absolute values of (1)J(P-O), (1)J(P-S), and (1)J(P-N) decrease upon complexation. Decreasing (1)J(P-A) values correlate linearly with increasing complex binding energies. In contrast, (1)J(P-C) values increase upon complexation and correlate linearly with increasing binding energies.

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Year:  2014        PMID: 24547683     DOI: 10.1021/jp411623h

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  7 in total

1.  An ab initio study on tunability of σ-hole interactions in XHS:PH2Y and XH2P:SHY complexes (X = F, Cl, Br; Y = H, OH, OCH3, CH3, C2H5, and NH2).

Authors:  Mehdi D Esrafili; Nafiseh Mohammadirad
Journal:  J Mol Model       Date:  2015-06-21       Impact factor: 1.810

2.  Competition between tetrel bond and pnicogen bond in complexes of TX3-ZX2 and NH3.

Authors:  Yan Li; Zhefeng Xu
Journal:  J Mol Model       Date:  2018-08-20       Impact factor: 1.810

3.  A comprehensive analysis of P···π pnicogen bonds: substitution effects and comparison with Br···π halogen bonds.

Authors:  Cuicui Liu; Yanli Zeng; Xiaoyan Li; Lingpeng Meng; Xueying Zhang
Journal:  J Mol Model       Date:  2015-05-17       Impact factor: 1.810

Review 4.  On the Importance of Pnictogen and Chalcogen Bonding Interactions in Supramolecular Catalysis.

Authors:  Antonio Frontera; Antonio Bauza
Journal:  Int J Mol Sci       Date:  2021-11-21       Impact factor: 5.923

5.  Involvement of Arsenic Atom of AsF3 in Five Pnicogen Bonds: Differences between X-ray Structure and Theoretical Models.

Authors:  Steve Scheiner; Mariusz Michalczyk; Wiktor Zierkiewicz
Journal:  Molecules       Date:  2022-10-01       Impact factor: 4.927

6.  Plausible Pnicogen Bonding of epi-Cinchonidine as a Chiral Scaffold in Catalysis.

Authors:  Zakir Ullah; Kang Kim; Arramshetti Venkanna; Hye Su Kim; Moon Il Kim; Mi-Hyun Kim
Journal:  Front Chem       Date:  2021-07-06       Impact factor: 5.221

7.  Evoking picomolar binding in RNA by a single phosphorodithioate linkage.

Authors:  N Dinuka Abeydeera; Martin Egli; Nehemiah Cox; Karen Mercier; Jonas Nascimento Conde; Pradeep S Pallan; Daniella M Mizurini; Malgorzata Sierant; Fatima-Ezzahra Hibti; Tom Hassell; Tianzhi Wang; Feng-Wu Liu; Hong-Min Liu; Carlos Martinez; Anil K Sood; Terry P Lybrand; Chiraz Frydman; Robson Q Monteiro; Richard H Gomer; Barbara Nawrot; Xianbin Yang
Journal:  Nucleic Acids Res       Date:  2016-08-26       Impact factor: 16.971

  7 in total

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