Literature DB >> 24531082

SMAL: A Resource of Spontaneous Mutation Accumulation Lines.

Wen Wei1, Lu-Wen Ning, Yuan-Nong Ye, Shi-Jie Li, Hui-Qi Zhou, Jian Huang, Feng-Biao Guo.   

Abstract

Mutation is the ultimate source of genetic variation and evolution. Mutation accumulation (MA) experiments are an alternative approach to study de novo mutation events directly. We have constructed a resource of Spontaneous Mutation Accumulation Lines (SMAL; http://cefg.uestc.edu.cn/smal), which contains all the current publicly available MA lines identified by high-throughput sequencing. We have relocated and mapped the mutations based on the most recent genome annotations. A total of 5,608 single base mutations and 540 other mutations were obtained and are recorded in the current version of the SMAL database. The integrated data in SMAL provide detailed information that can be used in new theoretical analyses. We believe that the SMAL resource will help researchers better understand the processes of genetic variation and the incidence of disease.

Keywords:  SMAL; database; mutation

Mesh:

Year:  2014        PMID: 24531082     DOI: 10.1093/molbev/msu073

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  6 in total

1.  The Rate and Molecular Spectrum of Spontaneous Mutations in the GC-Rich Multichromosome Genome of Burkholderia cenocepacia.

Authors:  Marcus M Dillon; Way Sung; Michael Lynch; Vaughn S Cooper
Journal:  Genetics       Date:  2015-05-12       Impact factor: 4.562

2.  Spatial Vulnerabilities of the Escherichia coli Genome to Spontaneous Mutations Revealed with Improved Duplex Sequencing.

Authors:  Xiaolong Zhang; Xuehong Zhang; Xia Zhang; Yuwei Liao; Luyao Song; Qingzheng Zhang; Peiying Li; Jichao Tian; Yanyan Shao; Aisha Mohammed Ai-Dherasi; Yulong Li; Ruimei Liu; Tao Chen; Xiaodi Deng; Yu Zhang; Dekang Lv; Jie Zhao; Jun Chen; Zhiguang Li
Journal:  Genetics       Date:  2018-08-03       Impact factor: 4.562

3.  accuMUlate: a mutation caller designed for mutation accumulation experiments.

Authors:  David J Winter; Steven H Wu; Abigail A Howell; Ricardo B R Azevedo; Rebecca A Zufall; Reed A Cartwright
Journal:  Bioinformatics       Date:  2018-08-01       Impact factor: 6.937

4.  Mutation Landscape of Base Substitutions, Duplications, and Deletions in the Representative Current Cholera Pandemic Strain.

Authors:  Wen Wei; Lifeng Xiong; Yuan-Nong Ye; Meng-Ze Du; Yi-Zhou Gao; Kai-Yue Zhang; Yan-Ting Jin; Zujun Yang; Po-Chun Wong; Susanna K P Lau; Biao Kan; Jun Zhu; Patrick C Y Woo; Feng-Biao Guo
Journal:  Genome Biol Evol       Date:  2018-08-01       Impact factor: 3.416

5.  Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns.

Authors:  J L Weissman; Shengwei Hou; Jed A Fuhrman
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-23       Impact factor: 12.779

6.  Genomic Complexity Places Less Restrictions on the Evolution of Young Coexpression Networks than Protein-Protein Interactions.

Authors:  Wen Wei; Yan-Ting Jin; Meng-Ze Du; Ju Wang; Nini Rao; Feng-Biao Guo
Journal:  Genome Biol Evol       Date:  2016-09-03       Impact factor: 3.416

  6 in total

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