Literature DB >> 24527010

2-{N-[(2,3,4,9-Tetra-hydro-1H-carbazol-3-yl)meth-yl]methyl-sulfonamido}-ethyl methane-sulfonate.

Mustafa Göçmentürk1, Yavuz Ergün1, Berline Mougang-Soume2, Nagihan Caylak Delibaş3, Tuncer Hökelek4.   

Abstract

In the title compound, C17H24N2O5S2, the n class="Chemical">indole ring system is nearly planar [maximum deviation = 0.032 (1) Å] and the cyclo-hexene ring has a half-chair conformation. In the crystal, N-H⋯O hydrogen bonds link the mol-ecules into a chain running along the b-axis direction. Weak C-H⋯O hydrogen bonds and weak C-H⋯π inter-actions are observed between the chains.

Entities:  

Year:  2013        PMID: 24527010      PMCID: PMC3914105          DOI: 10.1107/S1600536813034016

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For tetra­hydro­n class="Chemical">carbazole systems present in the framework of a number of indole-type alkaloids of biological inter­est, see: Saxton (1983 ▶). For the anti­tumor activity of tetra­hydro­carbazoles containing an amine unit, see: Chen et al. (2009 ▶). For the most potent drugs, such as ellipcitine and olivacine, for the treatment of a variety of cancers, see: Pelletier (1970 ▶). For the use of tetra­hydro­carbazoles in the synthesis of pyridocarbazoles, see: Knölker & Reddy (2002 ▶). For related structures, see: Patır et al. (1997 ▶); Gündoğdu et al. (2011 ▶); Göçmen­türk et al. (2013 ▶).

Experimental

Crystal data

C17H24N2O5S2 M = 400.50 Monoclinic, a = 5.4399 (2) Å b = 18.0322 (6) Å c = 19.0103 (6) Å β = 98.973 (2)° V = 1841.96 (11) Å3 Z = 4 Cu Kα radiation μ = 2.90 mm−1 T = 150 K 0.18 × 0.16 × 0.13 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.623, T max = 0.686 47392 measured reflections 3472 independent reflections 3357 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.090 S = 1.05 3472 reflections 241 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAIn class="Chemical">NT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813034016/xu5758sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813034016/xu5758Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536813034016/xu5758Isup3.cml Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H24N2O5S2F(000) = 848
Mr = 400.50Dx = 1.444 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 9016 reflections
a = 5.4399 (2) Åθ = 3.4–69.5°
b = 18.0322 (6) ŵ = 2.90 mm1
c = 19.0103 (6) ÅT = 150 K
β = 98.973 (2)°Plate, colourless
V = 1841.96 (11) Å30.18 × 0.16 × 0.13 mm
Z = 4
Bruker Kappa APEXII CCD area-detector diffractometer3472 independent reflections
Radiation source: fine-focus sealed tube3357 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.054
φ and ω scansθmax = 69.8°, θmin = 3.4°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −6→6
Tmin = 0.623, Tmax = 0.686k = −20→21
47392 measured reflectionsl = −23→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0569P)2 + 0.6777P] where P = (Fo2 + 2Fc2)/3
3472 reflections(Δ/σ)max < 0.001
241 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.19263 (6)−0.204476 (18)0.209478 (18)0.02367 (12)
S20.21420 (6)0.077279 (19)0.091542 (18)0.02505 (12)
O10.0230 (2)−0.20118 (6)0.25961 (6)0.0344 (3)
O20.0933 (2)−0.21216 (6)0.13524 (6)0.0339 (3)
O30.34759 (19)0.01082 (6)0.13520 (5)0.0276 (2)
O40.3080 (2)0.14168 (6)0.12962 (6)0.0368 (3)
O50.2426 (2)0.06975 (6)0.01834 (6)0.0328 (3)
N10.3567 (2)−0.12840 (6)0.21645 (6)0.0218 (2)
N90.2800 (2)0.16928 (7)0.40969 (7)0.0264 (3)
H90.161 (4)0.1983 (11)0.4018 (10)0.035 (5)*
C10.1172 (3)0.07536 (8)0.31395 (8)0.0252 (3)
H1A0.13700.10420.27090.030*
H1B−0.05490.08240.32360.030*
C20.1640 (2)−0.00717 (8)0.30133 (8)0.0243 (3)
H2A0.0927−0.03690.33700.029*
H2B0.0768−0.02130.25360.029*
C30.4407 (2)−0.02574 (7)0.30626 (7)0.0210 (3)
H30.51350.00550.27130.025*
C40.5787 (2)−0.00923 (7)0.38158 (7)0.0215 (3)
H4A0.5346−0.04710.41520.026*
H4B0.7606−0.01170.38170.026*
C4A0.5100 (3)0.06626 (7)0.40525 (7)0.0217 (3)
C50.8579 (3)0.10872 (8)0.50849 (8)0.0265 (3)
H50.96630.06760.50710.032*
C5A0.6340 (3)0.11314 (7)0.46082 (7)0.0229 (3)
C60.9185 (3)0.16495 (9)0.55752 (8)0.0315 (3)
H61.07040.16240.58980.038*
C70.7590 (3)0.22570 (9)0.56039 (8)0.0338 (4)
H70.80290.26280.59560.041*
C80.5396 (3)0.23279 (8)0.51321 (8)0.0318 (3)
H80.43300.27430.51490.038*
C8A0.4810 (3)0.17645 (8)0.46293 (7)0.0253 (3)
C9A0.2978 (3)0.10205 (8)0.37574 (7)0.0233 (3)
C100.4772 (3)−0.10741 (7)0.28916 (7)0.0228 (3)
H10A0.6576−0.11800.29400.027*
H10B0.4078−0.13840.32430.027*
C110.4043 (3)−0.27709 (9)0.23392 (10)0.0360 (4)
H11A0.5265−0.27860.20110.054*
H11B0.3142−0.32430.23170.054*
H11C0.4902−0.26890.28260.054*
C120.4941 (3)−0.11271 (8)0.15714 (8)0.0251 (3)
H12A0.5300−0.16000.13440.030*
H12B0.6551−0.08920.17620.030*
C130.3519 (3)−0.06250 (8)0.10170 (8)0.0264 (3)
H13A0.4356−0.05980.05910.032*
H13B0.1804−0.08120.08710.032*
C14−0.0999 (3)0.06534 (9)0.09937 (9)0.0344 (4)
H14B−0.15770.01720.07920.052*
H14A−0.19870.10500.07350.052*
H14C−0.11910.06700.14980.052*
U11U22U33U12U13U23
S10.02243 (19)0.02128 (19)0.0264 (2)−0.00275 (12)0.00095 (14)−0.00032 (12)
S20.0270 (2)0.0233 (2)0.0241 (2)−0.00371 (12)0.00149 (14)0.00101 (12)
O10.0284 (5)0.0383 (6)0.0378 (6)−0.0057 (4)0.0092 (5)0.0024 (5)
O20.0369 (6)0.0322 (6)0.0296 (6)−0.0095 (5)−0.0040 (5)−0.0024 (4)
O30.0334 (6)0.0244 (5)0.0238 (5)−0.0008 (4)0.0004 (4)0.0004 (4)
O40.0429 (6)0.0259 (6)0.0385 (6)−0.0081 (5)−0.0030 (5)−0.0022 (5)
O50.0395 (6)0.0337 (6)0.0256 (6)−0.0008 (5)0.0062 (5)0.0050 (4)
N10.0236 (6)0.0200 (6)0.0217 (6)−0.0010 (4)0.0029 (4)−0.0018 (4)
N90.0280 (6)0.0215 (6)0.0297 (7)0.0076 (5)0.0042 (5)−0.0005 (5)
C10.0230 (7)0.0234 (7)0.0287 (7)0.0035 (5)0.0021 (6)0.0012 (5)
C20.0210 (6)0.0231 (7)0.0283 (7)0.0006 (5)0.0020 (5)−0.0005 (5)
C30.0216 (6)0.0190 (6)0.0227 (7)0.0001 (5)0.0039 (5)−0.0003 (5)
C40.0212 (6)0.0207 (6)0.0226 (7)0.0024 (5)0.0032 (5)−0.0003 (5)
C4A0.0237 (6)0.0202 (6)0.0218 (7)0.0015 (5)0.0059 (5)0.0002 (5)
C50.0295 (7)0.0254 (7)0.0241 (7)0.0012 (6)0.0026 (6)0.0006 (5)
C5A0.0276 (7)0.0212 (7)0.0207 (6)0.0000 (5)0.0065 (5)0.0010 (5)
C60.0363 (8)0.0309 (8)0.0255 (7)−0.0042 (6)−0.0008 (6)−0.0002 (6)
C70.0492 (9)0.0253 (7)0.0262 (7)−0.0048 (7)0.0045 (7)−0.0061 (6)
C80.0442 (9)0.0218 (7)0.0304 (8)0.0029 (6)0.0090 (7)−0.0024 (6)
C8A0.0317 (7)0.0218 (7)0.0235 (7)0.0018 (6)0.0073 (6)0.0013 (5)
C9A0.0246 (7)0.0210 (7)0.0251 (7)0.0019 (5)0.0062 (5)0.0009 (5)
C100.0241 (7)0.0209 (7)0.0224 (7)0.0014 (5)0.0004 (5)−0.0013 (5)
C110.0378 (9)0.0207 (7)0.0474 (10)0.0012 (6)0.0001 (7)0.0010 (7)
C120.0243 (7)0.0255 (7)0.0262 (7)0.0000 (5)0.0062 (6)−0.0001 (5)
C130.0310 (7)0.0244 (7)0.0239 (7)−0.0016 (6)0.0047 (6)−0.0016 (5)
C140.0279 (8)0.0381 (8)0.0371 (9)−0.0018 (6)0.0049 (6)−0.0067 (7)
S1—O11.4273 (12)C4A—C9A1.365 (2)
S1—O21.4370 (11)C5—C61.382 (2)
S1—N11.6306 (12)C5—H50.9500
S1—C111.7576 (16)C5A—C4A1.4363 (19)
S2—O31.5697 (10)C5A—C51.402 (2)
S2—O41.4205 (11)C5A—C8A1.4169 (19)
S2—O51.4303 (11)C6—C71.404 (2)
S2—C141.7516 (16)C6—H60.9500
O3—C131.4693 (17)C7—C81.383 (2)
N1—C101.4836 (17)C7—H70.9500
N1—C121.4742 (18)C8—C8A1.397 (2)
N9—C8A1.3753 (19)C8—H80.9500
N9—C9A1.3837 (18)C9A—C11.489 (2)
N9—H90.83 (2)C10—H10A0.9900
C1—C21.5350 (19)C10—H10B0.9900
C1—H1A0.9900C11—H11A0.9800
C1—H1B0.9900C11—H11B0.9800
C2—C31.5304 (18)C11—H11C0.9800
C2—H2A0.9900C12—C131.508 (2)
C2—H2B0.9900C12—H12A0.9900
C3—C41.5386 (18)C12—H12B0.9900
C3—C101.5278 (18)C13—H13A0.9900
C3—H31.0000C13—H13B0.9900
C4—H4A0.9900C14—H14B0.9800
C4—H4B0.9900C14—H14A0.9800
C4A—C41.4992 (18)C14—H14C0.9800
O1—S1—O2118.47 (7)C5—C5A—C4A134.64 (13)
O1—S1—N1108.26 (6)C5—C5A—C8A118.82 (13)
O1—S1—C11108.63 (8)C8A—C5A—C4A106.54 (12)
O2—S1—N1106.15 (6)C5—C6—C7120.98 (14)
O2—S1—C11108.56 (8)C5—C6—H6119.5
N1—S1—C11106.12 (7)C7—C6—H6119.5
O3—S2—C14103.76 (7)C6—C7—H7119.2
O4—S2—O3104.78 (6)C8—C7—C6121.55 (14)
O4—S2—O5119.25 (7)C8—C7—H7119.2
O4—S2—C14109.56 (8)C7—C8—C8A117.27 (14)
O5—S2—O3109.32 (6)C7—C8—H8121.4
O5—S2—C14109.02 (8)C8A—C8—H8121.4
C13—O3—S2119.68 (9)N9—C8A—C5A107.83 (12)
C10—N1—S1116.55 (9)N9—C8A—C8129.95 (14)
C12—N1—S1115.83 (9)C8—C8A—C5A122.21 (14)
C12—N1—C10117.43 (11)N9—C9A—C1124.46 (12)
C8A—N9—C9A108.69 (12)C4A—C9A—N9109.80 (13)
C8A—N9—H9125.7 (13)C4A—C9A—C1125.68 (13)
C9A—N9—H9125.3 (13)N1—C10—C3113.02 (11)
C2—C1—H1A109.8N1—C10—H10A109.0
C2—C1—H1B109.8N1—C10—H10B109.0
C9A—C1—C2109.37 (11)C3—C10—H10A109.0
C9A—C1—H1A109.8C3—C10—H10B109.0
C9A—C1—H1B109.8H10A—C10—H10B107.8
H1A—C1—H1B108.2S1—C11—H11A109.5
C1—C2—H2A109.0S1—C11—H11B109.5
C1—C2—H2B109.0S1—C11—H11C109.5
C3—C2—C1112.84 (11)H11A—C11—H11B109.5
C3—C2—H2A109.0H11A—C11—H11C109.5
C3—C2—H2B109.0H11B—C11—H11C109.5
H2A—C2—H2B107.8N1—C12—C13112.57 (11)
C2—C3—C4110.32 (11)N1—C12—H12A109.1
C2—C3—H3108.9N1—C12—H12B109.1
C4—C3—H3108.9C13—C12—H12A109.1
C10—C3—C2110.92 (11)C13—C12—H12B109.1
C10—C3—C4108.89 (11)H12A—C12—H12B107.8
C10—C3—H3108.9O3—C13—C12106.16 (11)
C3—C4—H4A109.6O3—C13—H13A110.5
C3—C4—H4B109.6O3—C13—H13B110.5
C4A—C4—C3110.28 (11)C12—C13—H13A110.5
C4A—C4—H4A109.6C12—C13—H13B110.5
C4A—C4—H4B109.6H13A—C13—H13B108.7
H4A—C4—H4B108.1S2—C14—H14B109.5
C5A—C4A—C4130.15 (13)S2—C14—H14A109.5
C9A—C4A—C5A107.10 (12)S2—C14—H14C109.5
C9A—C4A—C4122.73 (13)H14B—C14—H14A109.5
C5A—C5—H5120.5H14B—C14—H14C109.5
C6—C5—C5A119.09 (14)H14A—C14—H14C109.5
C6—C5—H5120.5
O1—S1—N1—C1050.95 (11)C5A—C4A—C4—C3−161.46 (13)
O1—S1—N1—C12−164.56 (10)C9A—C4A—C4—C320.88 (18)
O2—S1—N1—C10179.12 (10)C4—C4A—C9A—N9178.07 (12)
O2—S1—N1—C12−36.39 (11)C4—C4A—C9A—C1−4.8 (2)
C11—S1—N1—C10−65.50 (12)C5A—C4A—C9A—N9−0.06 (16)
C11—S1—N1—C1278.99 (12)C5A—C4A—C9A—C1177.07 (13)
O4—S2—O3—C13−162.57 (10)C5A—C5—C6—C70.4 (2)
O5—S2—O3—C13−33.66 (12)C5—C5A—C4A—C43.9 (3)
C14—S2—O3—C1382.53 (11)C5—C5A—C4A—C9A−178.12 (16)
S2—O3—C13—C12179.57 (9)C8A—C5A—C4A—C4−176.65 (13)
S1—N1—C10—C3−133.41 (10)C8A—C5A—C4A—C9A1.29 (15)
C12—N1—C10—C382.67 (14)C4A—C5A—C5—C6−178.55 (15)
S1—N1—C12—C1394.59 (12)C8A—C5A—C5—C62.1 (2)
C10—N1—C12—C13−121.24 (13)C4A—C5A—C8A—N9−2.05 (15)
C9A—N9—C8A—C5A2.05 (16)C4A—C5A—C8A—C8177.19 (13)
C9A—N9—C8A—C8−177.12 (15)C5—C5A—C8A—N9177.48 (13)
C8A—N9—C9A—C1−178.42 (13)C5—C5A—C8A—C8−3.3 (2)
C8A—N9—C9A—C4A−1.25 (16)C5—C6—C7—C8−1.9 (2)
C9A—C1—C2—C3−43.77 (16)C6—C7—C8—C8A0.8 (2)
C1—C2—C3—C462.50 (15)C7—C8—C8A—N9−179.12 (15)
C1—C2—C3—C10−176.76 (11)C7—C8—C8A—C5A1.8 (2)
C2—C3—C4—C4A−47.92 (15)N9—C9A—C1—C2−167.67 (13)
C10—C3—C4—C4A−169.87 (11)C4A—C9A—C1—C215.6 (2)
C2—C3—C10—N160.12 (15)N1—C12—C13—O369.55 (14)
C4—C3—C10—N1−178.29 (11)
D—H···AD—HH···AD···AD—H···A
N9—H9···O2i0.83 (2)2.17 (2)2.9804 (16)166 (2)
C11—H11C···O4ii0.982.453.171 (2)130
C13—H13A···O5iii0.992.463.4148 (19)161
C14—H14B···O5iv0.982.423.317 (2)152
C11—H11A···Cg2ii0.982.953.6705 (19)131
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C4a/C5a/C8a/N9/C9a ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N9—H9⋯O2i 0.83 (2)2.17 (2)2.9804 (16)166 (2)
C11—H11C⋯O4ii 0.982.453.171 (2)130
C13—H13A⋯O5iii 0.992.463.4148 (19)161
C14—H14B⋯O5iv 0.982.423.317 (2)152
C11—H11ACg2ii 0.982.953.6705 (19)131

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

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Authors:  Hans-Joachim Knölker; Kethiri R Reddy
Journal:  Chem Rev       Date:  2002-11       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and in-vitro antitumor activities of some mannich bases of 9-alkyl-1,2,3,4-tetrahydrocarbazole-1-ones.

Authors:  Jing Chen; Jianshu Lou; Tao Liu; Ru Wu; Xiaowu Dong; Qiaojun He; Bo Yang; Yongzhou Hu
Journal:  Arch Pharm (Weinheim)       Date:  2009-03       Impact factor: 3.751

4.  Ethyl 4-oxo-2,3,4,9-tetra-hydro-1H-carbazole-3-carboxyl-ate.

Authors:  Cevher Gündoğdu; Mustafa Göçmentürk; Yavuz Ergün; Barış Tercan; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-20

5.  2-{4-Methyl-N-[(2,3,4,9-tetra-hydro-1H-carbazol-3-yl)meth-yl]benzene-sulfon-amido}-ethyl 4-methyl-benzene-sulfonate.

Authors:  Mustafa Göçmentürk; Yavuz Ergün; Berline Mougang-Soume; Nagihan Caylak Delibaş; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-20

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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