Literature DB >> 24526979

(E)-3-[(Di-methyl-amino)-methyl-idene]-4-phenyl-1-(prop-2-yn-yl)-1H-1,5-benzodiazepin-2(3H)-one.

Mohamed Loughzail1, Abdesselam Baouid1, Filipe A Almeida Paz2, José A S Cavaleiro3, El Hassane Soumhi4.   

Abstract

The title compound, C21H19N3O, exhibits an E configuration with respect to the C=C bond between the benzodiazepine and tri-methyl-amine groups. The seven-membered diazepine ring displays a boat conformation. In the crystal, mol-ecules are linked by a C-H⋯O hydrogen bond, forming a chain along [110].

Entities:  

Year:  2013        PMID: 24526979      PMCID: PMC3914077          DOI: 10.1107/S1600536813032960

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For benzodiazepine derivatives, see: Di Braccio et al. (2001 ▶); Pevarello et al. (1993 ▶). For related structures, see: Loughzail et al. (2011 ▶); Boudina et al. (2006 ▶).

Experimental

Crystal data

C21H19N3O M = 329.39 Monoclinic, a = 12.8122 (10) Å b = 13.9317 (12) Å c = 19.7795 (14) Å β = 94.647 (3)° V = 3519.0 (5) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 300 K 0.13 × 0.10 × 0.08 mm

Data collection

Bruker X8 KappaCCD APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.990, T max = 0.994 21544 measured reflections 3220 independent reflections 2555 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.099 S = 1.02 3220 reflections 228 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I, HasRB. DOI: 10.1107/S1600536813032960/is5319sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813032960/is5319Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536813032960/is5319Isup3.cml Additional supporting information: crystallographic information; 3D view; checkCIF report
C21H19N3OF(000) = 1392
Mr = 329.39Dx = 1.243 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 25 reflections
a = 12.8122 (10) Åθ = 10–15°
b = 13.9317 (12) ŵ = 0.08 mm1
c = 19.7795 (14) ÅT = 300 K
β = 94.647 (3)°Block, yellow
V = 3519.0 (5) Å30.13 × 0.10 × 0.08 mm
Z = 8
Bruker X8 KappaCCD APEXII diffractometer3220 independent reflections
Radiation source: fine-focus sealed tube2555 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
ω and φ scansθmax = 25.4°, θmin = 3.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→15
Tmin = 0.990, Tmax = 0.994k = −16→13
21544 measured reflectionsl = −23→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: difference Fourier map
wR(F2) = 0.099H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0423P)2 + 1.6343P] where P = (Fo2 + 2Fc2)/3
3220 reflections(Δ/σ)max < 0.001
228 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.14 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.23744 (12)−0.00078 (11)0.47258 (7)0.0493 (4)
H1A0.1759−0.04120.46560.059*
H1B0.2886−0.03450.50260.059*
C20.20897 (11)0.08866 (12)0.50454 (8)0.0500 (4)
C30.18446 (14)0.15873 (15)0.53145 (9)0.0687 (5)
H30.16490.21460.55290.082*
C40.27086 (11)−0.06084 (10)0.36193 (7)0.0418 (3)
C50.30050 (10)−0.04291 (10)0.29321 (7)0.0387 (3)
C60.27571 (10)0.05269 (10)0.26392 (7)0.0396 (3)
C70.19842 (11)0.05802 (11)0.20333 (7)0.0449 (4)
C80.20304 (13)0.13347 (11)0.15770 (8)0.0545 (4)
H80.25630.17880.16380.065*
C90.12883 (16)0.14127 (14)0.10342 (9)0.0710 (5)
H90.13310.19130.07260.085*
C100.04882 (16)0.07593 (18)0.09453 (10)0.0811 (6)
H10−0.00170.08230.05830.097*
C110.04357 (15)0.00075 (17)0.13950 (11)0.0806 (6)
H11−0.0107−0.04360.13360.097*
C120.11855 (13)−0.00900 (13)0.19330 (9)0.0603 (4)
H120.1155−0.06060.22290.072*
C130.37939 (11)0.13592 (10)0.34662 (7)0.0418 (3)
C140.46264 (12)0.20107 (11)0.34809 (9)0.0555 (4)
H140.47130.23850.31000.067*
C150.53236 (12)0.21109 (13)0.40479 (10)0.0630 (5)
H150.58860.25320.40430.076*
C160.51758 (12)0.15823 (13)0.46185 (9)0.0598 (4)
H160.56340.16530.50050.072*
C170.43540 (11)0.09509 (11)0.46209 (8)0.0497 (4)
H170.42570.06050.50130.060*
C180.36619 (10)0.08181 (10)0.40482 (7)0.0396 (3)
C190.33035 (10)−0.12223 (10)0.25861 (7)0.0418 (3)
H190.3208−0.18040.28030.050*
C200.40194 (12)−0.04771 (12)0.16008 (8)0.0537 (4)
H20A0.4630−0.06390.13740.064*
H20B0.41750.00560.19000.064*
H20C0.3460−0.03060.12710.064*
C210.39525 (14)−0.22348 (12)0.17186 (9)0.0653 (5)
H21A0.4697−0.22960.17060.078*
H21B0.3620−0.23000.12680.078*
H21C0.3701−0.27270.20040.078*
N10.28111 (9)0.01576 (8)0.40710 (6)0.0415 (3)
N20.30977 (9)0.13373 (8)0.28823 (6)0.0446 (3)
N30.37076 (9)−0.12945 (9)0.19895 (6)0.0462 (3)
O10.23521 (10)−0.13715 (8)0.38040 (6)0.0660 (3)
U11U22U33U12U13U23
C10.0566 (9)0.0513 (9)0.0418 (8)−0.0016 (7)0.0155 (7)0.0015 (7)
C20.0463 (8)0.0615 (10)0.0434 (8)0.0012 (7)0.0107 (6)−0.0030 (8)
C30.0633 (10)0.0749 (13)0.0700 (12)0.0078 (9)0.0182 (9)−0.0209 (10)
C40.0450 (7)0.0363 (8)0.0452 (8)−0.0025 (6)0.0109 (6)0.0006 (6)
C50.0420 (7)0.0362 (7)0.0384 (7)−0.0030 (6)0.0065 (6)−0.0013 (6)
C60.0440 (7)0.0383 (8)0.0377 (7)−0.0002 (6)0.0114 (6)−0.0005 (6)
C70.0484 (8)0.0449 (8)0.0421 (8)0.0077 (7)0.0078 (6)−0.0031 (6)
C80.0659 (10)0.0487 (9)0.0493 (9)0.0135 (8)0.0064 (7)0.0002 (7)
C90.0899 (14)0.0705 (12)0.0518 (10)0.0326 (11)0.0009 (9)0.0031 (9)
C100.0723 (13)0.1024 (17)0.0650 (12)0.0292 (12)−0.0170 (10)−0.0110 (12)
C110.0597 (11)0.0990 (17)0.0804 (14)−0.0018 (11)−0.0105 (10)−0.0117 (13)
C120.0547 (9)0.0672 (11)0.0585 (10)−0.0035 (8)0.0013 (8)−0.0025 (8)
C130.0461 (8)0.0360 (8)0.0448 (8)−0.0011 (6)0.0122 (6)−0.0075 (6)
C140.0625 (9)0.0452 (9)0.0621 (10)−0.0125 (7)0.0257 (8)−0.0110 (8)
C150.0442 (8)0.0583 (11)0.0880 (13)−0.0119 (8)0.0155 (8)−0.0270 (10)
C160.0444 (8)0.0629 (11)0.0711 (11)0.0035 (8)−0.0023 (8)−0.0188 (9)
C170.0486 (8)0.0495 (9)0.0508 (9)0.0080 (7)0.0017 (7)−0.0060 (7)
C180.0390 (7)0.0369 (7)0.0440 (8)0.0019 (6)0.0098 (6)−0.0055 (6)
C190.0438 (7)0.0373 (8)0.0449 (8)−0.0043 (6)0.0078 (6)−0.0009 (6)
C200.0531 (9)0.0621 (10)0.0480 (9)−0.0015 (7)0.0166 (7)0.0018 (8)
C210.0720 (11)0.0573 (11)0.0690 (11)−0.0003 (9)0.0213 (9)−0.0224 (9)
N10.0481 (6)0.0402 (7)0.0375 (6)−0.0046 (5)0.0121 (5)−0.0020 (5)
N20.0569 (7)0.0367 (7)0.0415 (7)−0.0019 (5)0.0111 (5)0.0003 (5)
N30.0501 (7)0.0442 (7)0.0458 (7)−0.0024 (5)0.0138 (6)−0.0082 (6)
O10.0993 (9)0.0428 (6)0.0605 (7)−0.0180 (6)0.0342 (6)−0.0033 (5)
C1—C21.457 (2)C12—H120.9300
C1—N11.4700 (18)C13—C181.398 (2)
C1—H1A0.9700C13—C141.399 (2)
C1—H1B0.9700C13—N21.4012 (18)
C2—C31.167 (2)C14—C151.383 (2)
C3—H30.9300C14—H140.9300
C4—O11.2244 (16)C15—C161.373 (3)
C4—N11.3911 (18)C15—H150.9300
C4—C51.4622 (19)C16—C171.372 (2)
C5—C191.3705 (19)C16—H160.9300
C5—C61.4767 (19)C17—C181.393 (2)
C6—N21.2893 (17)C17—H170.9300
C6—C71.493 (2)C18—N11.4301 (17)
C7—C121.388 (2)C19—N31.3303 (18)
C7—C81.390 (2)C19—H190.9300
C8—C91.380 (2)C20—N31.4482 (19)
C8—H80.9300C20—H20A0.9600
C9—C101.372 (3)C20—H20B0.9600
C9—H90.9300C20—H20C0.9600
C10—C111.379 (3)C21—N31.4590 (19)
C10—H100.9300C21—H21A0.9600
C11—C121.381 (2)C21—H21B0.9600
C11—H110.9300C21—H21C0.9600
C2—C1—N1112.02 (12)C15—C14—C13121.58 (16)
C2—C1—H1A109.2C15—C14—H14119.2
N1—C1—H1A109.2C13—C14—H14119.2
C2—C1—H1B109.2C16—C15—C14119.29 (15)
N1—C1—H1B109.2C16—C15—H15120.4
H1A—C1—H1B107.9C14—C15—H15120.4
C3—C2—C1177.97 (17)C17—C16—C15120.23 (15)
C2—C3—H3180.0C17—C16—H16119.9
O1—C4—N1119.51 (13)C15—C16—H16119.9
O1—C4—C5123.84 (13)C16—C17—C18121.35 (15)
N1—C4—C5116.61 (12)C16—C17—H17119.3
C19—C5—C4115.50 (12)C18—C17—H17119.3
C19—C5—C6126.24 (12)C17—C18—C13119.11 (13)
C4—C5—C6117.07 (11)C17—C18—N1119.76 (13)
N2—C6—C5126.02 (12)C13—C18—N1121.10 (12)
N2—C6—C7115.98 (12)N3—C19—C5130.42 (13)
C5—C6—C7117.85 (12)N3—C19—H19114.8
C12—C7—C8119.06 (14)C5—C19—H19114.8
C12—C7—C6120.98 (13)N3—C20—H20A109.5
C8—C7—C6119.89 (14)N3—C20—H20B109.5
C9—C8—C7120.13 (17)H20A—C20—H20B109.5
C9—C8—H8119.9N3—C20—H20C109.5
C7—C8—H8119.9H20A—C20—H20C109.5
C10—C9—C8120.55 (18)H20B—C20—H20C109.5
C10—C9—H9119.7N3—C21—H21A109.5
C8—C9—H9119.7N3—C21—H21B109.5
C9—C10—C11119.76 (18)H21A—C21—H21B109.5
C9—C10—H10120.1N3—C21—H21C109.5
C11—C10—H10120.1H21A—C21—H21C109.5
C10—C11—C12120.28 (19)H21B—C21—H21C109.5
C10—C11—H11119.9C4—N1—C18120.39 (11)
C12—C11—H11119.9C4—N1—C1115.01 (11)
C11—C12—C7120.19 (18)C18—N1—C1118.30 (11)
C11—C12—H12119.9C6—N2—C13120.00 (12)
C7—C12—H12119.9C19—N3—C20123.73 (12)
C18—C13—C14118.40 (14)C19—N3—C21120.29 (13)
C18—C13—N2123.75 (12)C20—N3—C21115.74 (12)
C14—C13—N2117.69 (13)
O1—C4—C5—C19−27.5 (2)C16—C17—C18—C13−1.7 (2)
N1—C4—C5—C19154.90 (12)C16—C17—C18—N1−179.66 (13)
O1—C4—C5—C6140.80 (15)C14—C13—C18—C170.53 (19)
N1—C4—C5—C6−36.78 (17)N2—C13—C18—C17−174.84 (12)
C19—C5—C6—N2−133.01 (15)C14—C13—C18—N1178.43 (12)
C4—C5—C6—N260.09 (18)N2—C13—C18—N13.1 (2)
C19—C5—C6—C751.59 (19)C4—C5—C19—N3−172.74 (14)
C4—C5—C6—C7−115.32 (14)C6—C5—C19—N320.2 (2)
N2—C6—C7—C12−146.20 (14)O1—C4—N1—C18146.04 (14)
C5—C6—C7—C1229.67 (19)C5—C4—N1—C18−36.26 (18)
N2—C6—C7—C830.81 (19)O1—C4—N1—C1−5.6 (2)
C5—C6—C7—C8−153.32 (13)C5—C4—N1—C1172.08 (12)
C12—C7—C8—C90.2 (2)C17—C18—N1—C4−121.72 (14)
C6—C7—C8—C9−176.90 (14)C13—C18—N1—C460.39 (18)
C7—C8—C9—C101.2 (3)C17—C18—N1—C129.02 (18)
C8—C9—C10—C11−1.2 (3)C13—C18—N1—C1−148.87 (13)
C9—C10—C11—C12−0.1 (3)C2—C1—N1—C4−155.14 (13)
C10—C11—C12—C71.4 (3)C2—C1—N1—C1852.58 (17)
C8—C7—C12—C11−1.5 (2)C5—C6—N2—C132.0 (2)
C6—C7—C12—C11175.58 (15)C7—C6—N2—C13177.51 (11)
C18—C13—C14—C151.4 (2)C18—C13—N2—C6−45.70 (19)
N2—C13—C14—C15177.09 (14)C14—C13—N2—C6138.91 (14)
C13—C14—C15—C16−2.2 (2)C5—C19—N3—C206.6 (2)
C14—C15—C16—C171.0 (2)C5—C19—N3—C21−179.16 (15)
C15—C16—C17—C181.0 (2)
D—H···AD—HH···AD···AD—H···A
C15—H15···O1i0.932.503.415 (2)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C15—H15⋯O1i 0.932.503.415 (2)170

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1,5-Benzodiazepines. Part XII. Synthesis and biological evaluation of tricyclic and tetracyclic 1,5-benzodiazepine derivatives as nevirapine analogues.

Authors:  M Di Braccio; G Grossi; G Roma; L Vargiu; M Mura; M E Marongiu
Journal:  Eur J Med Chem       Date:  2001 Nov-Dec       Impact factor: 6.514

3.  4-Phenyl-1-(prop-2-yn-1-yl)-1H-1,5-benzodiazepin-2(3H)-one.

Authors:  Mohamed Loughzail; José A Fernandes; Abdesselam Baouid; Mohamed Essaber; José A S Cavaleiro; Filipe A Almeida Paz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23
  3 in total
  1 in total

1.  (E)-3-[(Di-methyl-amino)-methyl-idene]-4-phenyl-1H-1,5-benzodiazepin-2(3H)-one.

Authors:  Mohamed Loughzail; Abdesselam Baouid; José A Fernandes; Mohamed Driss; El Hassane Soumhi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-11
  1 in total

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