Literature DB >> 24526974

3,6-Di-chloro-9-(prop-2-yn-1-yl)-9H-carbazole.

Joel T Mague1, Mehmet Akkurt2, Shaaban K Mohamed3, Asmaa H Mohamed4, Mustafa R Albayati5.   

Abstract

The tricyclic aromatic ring system of the title compound, C15H9Cl2N, is essentially planar (r.m.s. deviation = 0.002 Å). The two Cl atoms lie slightly out of the plane of the carbazole ring system, with the C-Cl bonds forming angles of 1.23 (8) and 1.14 (8)° with the plane. The acetylene group has a syn orientation with respect to the ring system. In the crystal, no weak hydrogen bonds nor any π-π stacking inter-actions are observed.

Entities:  

Year:  2013        PMID: 24526974      PMCID: PMC3914073          DOI: 10.1107/S1600536813032777

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For industrial applications of carbazole-containing compounds, see: Zhang et al. (1998 ▶). For pharmaceutical properties of carbazoles, see: Liu & Larock (2007 ▶); Hussain et al. (2011 ▶); Zhang et al. (2010 ▶); Conchon et al. (2006 ▶). For a related structure, see: Xie et al. (2012 ▶).

Experimental

Crystal data

C15H9Cl2N M = 274.13 Orthorhombic, a = 3.9825 (1) Å b = 11.1705 (4) Å c = 27.4417 (9) Å V = 1220.79 (7) Å3 Z = 4 Cu Kα radiation μ = 4.59 mm−1 T = 100 K 0.18 × 0.05 × 0.02 mm

Data collection

Bruker D8 VENTURE PHOTON 100 CMOS diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▶) T min = 0.74, T max = 0.91 10712 measured reflections 2224 independent reflections 2160 reflections with I > 2σ(I) R int = 0.088

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.068 S = 1.05 2224 reflections 163 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack parameter determined using 817 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▶) Absolute structure parameter: −0.002 (12) Data collection: APEX2 (Bruker, 2013 ▶); cell refinement: SAINT (Bruker, 2013 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813032777/lh5674sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813032777/lh5674Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536813032777/lh5674Isup3.cml Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H9Cl2NF(000) = 560
Mr = 274.13Dx = 1.492 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ac 2abCell parameters from 9151 reflections
a = 3.9825 (1) Åθ = 4.3–68.0°
b = 11.1705 (4) ŵ = 4.59 mm1
c = 27.4417 (9) ÅT = 100 K
V = 1220.79 (7) Å3Column, colourless
Z = 40.18 × 0.05 × 0.02 mm
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer2224 independent reflections
Radiation source: INCOATEC IµS micro–focus source2160 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.088
Detector resolution: 10.4167 pixels mm-1θmax = 68.1°, θmin = 3.2°
ω scansh = −4→4
Absorption correction: multi-scan (SADABS; Bruker, 2013)k = −13→13
Tmin = 0.74, Tmax = 0.91l = −32→33
10712 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.026 W = 1/[Σ2(FO2) + (0.0351P)2 + 0.195P] where P = (FO2 + 2FC2)/3
wR(F2) = 0.068(Δ/σ)max < 0.001
S = 1.05Δρmax = 0.22 e Å3
2224 reflectionsΔρmin = −0.18 e Å3
163 parametersAbsolute structure: Flack parameter determined using 817 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
0 restraintsAbsolute structure parameter: −0.002 (12)
Experimental. 1H-NMR (300 MHz, CDCl3): d 3.31 (s, 1H, C—CH), 5.34 (d, 2H, J=2.4 Hz, CH2—C), 7.54 (m, 2H, Ar—H), 7.74 (m, 2H, Ar—H), 8.34 (s, 2H, Ar—H). 13 C-NMR (75 MHz, CDCl3): d 32.2 (CH2), 74.8 (C—CH), 78.5 (C—CH), 111.4, 120.5, (4CH-Ar), 122.9, 124.2 (4 C-Ar), 126.4 (2CH-Ar), 138.6 (2 C-Ar). MS: (EI) m/z (%): 275 (M+2, 70), 274 (M+1, 74), 273 (M+, 100), 247 (10), 233 (44), 201 (4), 174 (2), 164 (14), 150 (2), 122 (2), 98 (2), 75 (4). Anal. for C15H9Cl2N: calcd. C, 65.72; H, 3.31; Cl, 25.86; N, 5.11. Found: C, 65.38; H, 3.11; N, 4.95%.
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.52328 (16)0.39290 (5)−0.06840 (2)0.0240 (2)
Cl20.52780 (15)0.15240 (5)0.22392 (2)0.0252 (2)
N10.0291 (5)0.57255 (17)0.11884 (6)0.0190 (5)
C10.1356 (6)0.5462 (2)0.07181 (8)0.0180 (6)
C20.0865 (6)0.6107 (2)0.02874 (8)0.0218 (7)
C30.2076 (6)0.5615 (2)−0.01405 (8)0.0214 (7)
C40.3762 (6)0.4513 (2)−0.01335 (8)0.0197 (6)
C50.4309 (6)0.3879 (2)0.02890 (8)0.0190 (6)
C60.3072 (6)0.4360 (2)0.07226 (8)0.0175 (6)
C70.3067 (6)0.3947 (2)0.12215 (8)0.0177 (6)
C80.4327 (6)0.2920 (2)0.14472 (8)0.0188 (6)
C90.3751 (6)0.2800 (2)0.19418 (8)0.0208 (7)
C100.2040 (6)0.3660 (2)0.22166 (8)0.0217 (7)
C110.0803 (6)0.4677 (2)0.19960 (8)0.0213 (7)
C120.1317 (6)0.4812 (2)0.14950 (8)0.0183 (6)
C13−0.1714 (6)0.6755 (2)0.13263 (9)0.0219 (7)
C140.0264 (6)0.7838 (2)0.14305 (8)0.0216 (6)
C150.1835 (7)0.8710 (2)0.15139 (10)0.0284 (7)
H2−0.026100.685600.028800.0260*
H30.176400.60250−0.044000.0260*
H50.548900.314000.028600.0230*
H80.552800.233000.126900.0230*
H100.172700.354200.255600.0260*
H11−0.036100.526900.217900.0260*
H13A−0.304500.654700.161900.0260*
H13B−0.331100.693400.106000.0260*
H150.310000.941200.158100.0340*
U11U22U33U12U13U23
Cl10.0287 (3)0.0266 (3)0.0167 (2)−0.0027 (3)0.0020 (2)−0.0015 (2)
Cl20.0256 (3)0.0274 (3)0.0226 (3)−0.0015 (3)−0.0015 (2)0.0073 (2)
N10.0184 (9)0.0176 (9)0.0209 (9)−0.0002 (9)0.0008 (8)−0.0031 (7)
C10.0165 (11)0.0170 (11)0.0206 (11)−0.0036 (9)−0.0012 (9)−0.0023 (9)
C20.0201 (11)0.0185 (11)0.0269 (12)−0.0009 (10)−0.0024 (9)0.0002 (9)
C30.0221 (11)0.0228 (12)0.0192 (11)−0.0057 (10)−0.0024 (9)0.0016 (10)
C40.0191 (11)0.0212 (11)0.0189 (11)−0.0052 (9)0.0009 (9)−0.0023 (9)
C50.0186 (11)0.0180 (11)0.0204 (10)−0.0036 (10)0.0004 (9)−0.0017 (9)
C60.0157 (10)0.0174 (11)0.0195 (11)−0.0028 (9)−0.0017 (9)−0.0014 (9)
C70.0155 (10)0.0188 (11)0.0188 (11)−0.0045 (9)0.0006 (8)−0.0018 (9)
C80.0168 (11)0.0201 (10)0.0194 (10)−0.0028 (9)−0.0008 (9)−0.0028 (9)
C90.0178 (12)0.0235 (12)0.0211 (11)−0.0056 (10)−0.0038 (9)0.0031 (10)
C100.0194 (11)0.0291 (13)0.0167 (10)−0.0066 (10)0.0015 (9)−0.0024 (10)
C110.0193 (12)0.0238 (12)0.0207 (11)−0.0041 (10)0.0017 (9)−0.0064 (9)
C120.0143 (11)0.0188 (11)0.0219 (11)−0.0034 (9)−0.0008 (9)−0.0031 (9)
C130.0173 (11)0.0208 (12)0.0276 (12)0.0012 (10)0.0005 (9)−0.0043 (10)
C140.0212 (12)0.0219 (11)0.0217 (10)0.0062 (11)0.0028 (10)−0.0018 (9)
C150.0276 (12)0.0206 (12)0.0369 (14)0.0005 (11)0.0004 (11)−0.0031 (11)
Cl1—C41.747 (2)C9—C101.399 (3)
Cl2—C91.751 (2)C10—C111.378 (3)
N1—C11.390 (3)C11—C121.398 (3)
N1—C121.384 (3)C13—C141.472 (3)
N1—C131.450 (3)C14—C151.180 (3)
C1—C21.398 (3)C2—H20.9500
C1—C61.408 (3)C3—H30.9500
C2—C31.383 (3)C5—H50.9500
C3—C41.402 (3)C8—H80.9500
C4—C51.376 (3)C10—H100.9500
C5—C61.395 (3)C11—H110.9500
C6—C71.445 (3)C13—H13A0.9900
C7—C81.397 (3)C13—H13B0.9900
C7—C121.408 (3)C15—H150.9500
C8—C91.383 (3)
C1—N1—C12108.55 (18)N1—C12—C7109.15 (19)
C1—N1—C13125.32 (19)N1—C12—C11129.3 (2)
C12—N1—C13126.05 (18)C7—C12—C11121.5 (2)
N1—C1—C2129.3 (2)N1—C13—C14114.1 (2)
N1—C1—C6108.97 (19)C13—C14—C15179.7 (3)
C2—C1—C6121.7 (2)C1—C2—H2121.00
C1—C2—C3117.7 (2)C3—C2—H2121.00
C2—C3—C4120.3 (2)C2—C3—H3120.00
Cl1—C4—C3118.46 (17)C4—C3—H3120.00
Cl1—C4—C5118.91 (17)C4—C5—H5121.00
C3—C4—C5122.6 (2)C6—C5—H5121.00
C4—C5—C6117.7 (2)C7—C8—H8121.00
C1—C6—C5120.0 (2)C9—C8—H8121.00
C1—C6—C7106.67 (19)C9—C10—H10120.00
C5—C6—C7133.3 (2)C11—C10—H10120.00
C6—C7—C8133.0 (2)C10—C11—H11121.00
C6—C7—C12106.66 (19)C12—C11—H11121.00
C8—C7—C12120.3 (2)N1—C13—H13A109.00
C7—C8—C9117.1 (2)N1—C13—H13B109.00
Cl2—C9—C8118.59 (17)C14—C13—H13A109.00
Cl2—C9—C10118.49 (17)C14—C13—H13B109.00
C8—C9—C10122.9 (2)H13A—C13—H13B108.00
C9—C10—C11120.2 (2)C14—C15—H15180.00
C10—C11—C12117.9 (2)
C12—N1—C1—C2178.9 (2)C3—C4—C5—C61.0 (4)
C12—N1—C1—C60.4 (3)C4—C5—C6—C1−0.5 (3)
C13—N1—C1—C21.9 (4)C4—C5—C6—C7177.8 (2)
C13—N1—C1—C6−176.6 (2)C1—C6—C7—C8179.0 (3)
C1—N1—C12—C70.0 (3)C1—C6—C7—C120.6 (3)
C1—N1—C12—C11−179.3 (2)C5—C6—C7—C80.6 (5)
C13—N1—C12—C7177.0 (2)C5—C6—C7—C12−177.8 (3)
C13—N1—C12—C11−2.4 (4)C6—C7—C8—C9−177.8 (2)
C1—N1—C13—C14−86.6 (3)C12—C7—C8—C90.4 (3)
C12—N1—C13—C1497.0 (3)C6—C7—C12—N1−0.4 (3)
N1—C1—C2—C3−177.2 (2)C6—C7—C12—C11179.0 (2)
C6—C1—C2—C31.1 (4)C8—C7—C12—N1−179.1 (2)
N1—C1—C6—C5178.1 (2)C8—C7—C12—C110.3 (4)
N1—C1—C6—C7−0.6 (3)C7—C8—C9—Cl2179.84 (17)
C2—C1—C6—C5−0.6 (4)C7—C8—C9—C10−1.0 (4)
C2—C1—C6—C7−179.3 (2)Cl2—C9—C10—C11179.94 (18)
C1—C2—C3—C4−0.7 (3)C8—C9—C10—C110.8 (4)
C2—C3—C4—Cl1179.85 (18)C9—C10—C11—C120.0 (3)
C2—C3—C4—C5−0.4 (4)C10—C11—C12—N1178.7 (2)
Cl1—C4—C5—C6−179.26 (18)C10—C11—C12—C7−0.6 (4)
  6 in total

1.  Synthesis, antibacterial and antifungal activities of some carbazole derivatives.

Authors:  Fei-Fei Zhang; Lin-Ling Gan; Cheng-He Zhou
Journal:  Bioorg Med Chem Lett       Date:  2010-02-04       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis of Carbazoles and Dibenzofurans via Cross-Coupling of o-Iodoanilines and o-Iodophenols with Silylaryl Triflates and Subsequent Pd-Catalyzed Cyclization.

Authors:  Zhijian Liu; Richard C Larock
Journal:  Tetrahedron       Date:  2007-01-08       Impact factor: 2.457

4.  3,6-Diiodo-9H-carbazole.

Authors:  Yu-Zhong Xie; Jing-Yi Jin; Guang-De Jin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-31

5.  Use of intensity quotients and differences in absolute structure refinement.

Authors:  Simon Parsons; Howard D Flack; Trixie Wagner
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2013-05-17

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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