| Literature DB >> 24526966 |
Hong-Lan Cai1, Bing Liu1, Qing-An Qiao1.
Abstract
In the crystal structure of the title compound, C6H8N3O2 (+)·C6Entities:
Year: 2013 PMID: 24526966 PMCID: PMC3914065 DOI: 10.1107/S1600536813032479
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H8N3O2+·C6H2N3O7−·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 924 reflections |
| θ = 2.3–21.5° | |
| µ = 0.15 mm−1 | |
| β = 101.360 (1)° | Needle, yellow |
| 0.20 × 0.08 × 0.04 mm | |
| Bruker SMART CCD area-detector diffractometer | 3643 independent reflections |
| Radiation source: fine-focus sealed tube | 2487 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 27.5°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 16632 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3643 reflections | (Δ/σ)max = 0.001 |
| 271 parameters | Δρmax = 0.31 e Å−3 |
| 10 restraints | Δρmin = −0.31 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | −0.3571 (5) | 0.67096 (8) | 0.4377 (2) | 0.0427 (6) | |
| C2 | −0.5710 (5) | 0.67706 (9) | 0.3408 (2) | 0.0473 (6) | |
| H2 | −0.5922 | 0.6562 | 0.2786 | 0.057* | |
| C3 | −0.7524 (6) | 0.71420 (9) | 0.3368 (3) | 0.0523 (7) | |
| H3 | −0.8968 | 0.7186 | 0.2722 | 0.063* | |
| C4 | −0.7169 (6) | 0.74447 (8) | 0.4294 (3) | 0.0505 (7) | |
| C5 | −0.5048 (7) | 0.73915 (10) | 0.5256 (3) | 0.0603 (8) | |
| H5 | −0.4836 | 0.7603 | 0.5870 | 0.072* | |
| C6 | −0.3246 (6) | 0.70235 (10) | 0.5302 (3) | 0.0555 (7) | |
| H6 | −0.1806 | 0.6983 | 0.5952 | 0.067* | |
| C7 | 0.7836 (5) | 0.56180 (8) | 0.7388 (2) | 0.0365 (5) | |
| C8 | 0.6275 (5) | 0.59770 (7) | 0.7872 (2) | 0.0344 (5) | |
| C9 | 0.6776 (5) | 0.61004 (7) | 0.9025 (2) | 0.0361 (5) | |
| H9 | 0.5682 | 0.6327 | 0.9287 | 0.043* | |
| C10 | 0.8913 (5) | 0.58870 (8) | 0.9798 (2) | 0.0375 (5) | |
| C11 | 1.0603 (5) | 0.55567 (8) | 0.9429 (2) | 0.0363 (5) | |
| H11 | 1.2063 | 0.5420 | 0.9960 | 0.044* | |
| C12 | 1.0107 (5) | 0.54316 (7) | 0.8270 (2) | 0.0345 (5) | |
| N1 | −0.2290 (5) | 0.59509 (8) | 0.3776 (2) | 0.0543 (6) | |
| H1A | −0.377 (3) | 0.5818 (9) | 0.394 (2) | 0.065* | |
| H1B | −0.078 (3) | 0.5783 (8) | 0.399 (2) | 0.065* | |
| H1C | −0.250 (4) | 0.6027 (10) | 0.3037 (11) | 0.065* | |
| N2 | −0.1620 (5) | 0.63550 (8) | 0.4446 (2) | 0.0579 (6) | |
| H2A | −0.069 (6) | 0.6290 (11) | 0.5132 (14) | 0.070* | |
| N3 | −0.9135 (7) | 0.78313 (9) | 0.4265 (3) | 0.0711 (8) | |
| N4 | 0.3991 (4) | 0.62195 (7) | 0.71219 (19) | 0.0419 (5) | |
| N5 | 0.9370 (5) | 0.60035 (8) | 1.10213 (19) | 0.0481 (5) | |
| N6 | 1.2004 (4) | 0.50850 (7) | 0.79502 (19) | 0.0403 (5) | |
| O1 | −1.1132 (6) | 0.78583 (8) | 0.3443 (3) | 0.0885 (8) | |
| O2 | −0.8693 (7) | 0.81070 (9) | 0.5084 (3) | 0.1111 (11) | |
| O3 | 0.7262 (4) | 0.54803 (7) | 0.63542 (15) | 0.0569 (5) | |
| O4 | 0.3387 (6) | 0.61246 (9) | 0.6108 (2) | 0.1019 (10) | |
| O5 | 0.2717 (6) | 0.65136 (10) | 0.7518 (2) | 0.0989 (10) | |
| O6 | 0.7656 (5) | 0.62597 (7) | 1.13576 (17) | 0.0648 (6) | |
| O7 | 1.1385 (5) | 0.58370 (8) | 1.16900 (17) | 0.0676 (6) | |
| O8 | 1.3571 (5) | 0.48802 (8) | 0.87253 (19) | 0.0694 (6) | |
| O9 | 1.2022 (4) | 0.50150 (8) | 0.69233 (18) | 0.0697 (6) | |
| O10 | 0.2853 (4) | 0.54747 (6) | 0.43546 (16) | 0.0545 (5) | |
| H10B | 0.264 (7) | 0.5203 (5) | 0.413 (2) | 0.082* | |
| H10A | 0.362 (7) | 0.5483 (10) | 0.5049 (12) | 0.082* |
| C1 | 0.0376 (13) | 0.0414 (13) | 0.0506 (15) | 0.0074 (10) | 0.0123 (11) | 0.0029 (11) |
| C2 | 0.0436 (14) | 0.0457 (14) | 0.0508 (15) | 0.0078 (11) | 0.0049 (12) | −0.0036 (12) |
| C3 | 0.0426 (15) | 0.0480 (15) | 0.0648 (18) | 0.0083 (12) | 0.0067 (13) | 0.0059 (14) |
| C4 | 0.0498 (15) | 0.0353 (13) | 0.0716 (19) | 0.0075 (11) | 0.0248 (14) | 0.0055 (13) |
| C5 | 0.074 (2) | 0.0456 (15) | 0.066 (2) | 0.0037 (14) | 0.0243 (17) | −0.0121 (14) |
| C6 | 0.0565 (17) | 0.0579 (17) | 0.0494 (16) | 0.0044 (13) | 0.0038 (13) | −0.0049 (13) |
| C7 | 0.0354 (12) | 0.0358 (12) | 0.0376 (13) | 0.0002 (10) | 0.0059 (10) | −0.0009 (10) |
| C8 | 0.0320 (11) | 0.0294 (11) | 0.0407 (13) | −0.0004 (9) | 0.0041 (10) | 0.0015 (9) |
| C9 | 0.0375 (12) | 0.0301 (11) | 0.0423 (14) | −0.0018 (9) | 0.0120 (10) | −0.0013 (10) |
| C10 | 0.0440 (13) | 0.0336 (12) | 0.0346 (13) | −0.0063 (10) | 0.0069 (10) | −0.0033 (9) |
| C11 | 0.0354 (12) | 0.0349 (12) | 0.0363 (13) | −0.0043 (10) | 0.0011 (10) | 0.0038 (10) |
| C12 | 0.0321 (12) | 0.0303 (11) | 0.0413 (13) | −0.0012 (9) | 0.0081 (10) | −0.0009 (9) |
| N1 | 0.0623 (15) | 0.0477 (13) | 0.0567 (15) | 0.0216 (12) | 0.0210 (12) | 0.0058 (11) |
| N2 | 0.0523 (14) | 0.0538 (14) | 0.0629 (16) | 0.0191 (11) | −0.0006 (12) | −0.0046 (12) |
| N3 | 0.077 (2) | 0.0415 (14) | 0.105 (2) | 0.0169 (13) | 0.0438 (18) | 0.0148 (15) |
| N4 | 0.0409 (11) | 0.0384 (11) | 0.0444 (13) | 0.0028 (9) | 0.0040 (9) | 0.0026 (9) |
| N5 | 0.0614 (14) | 0.0457 (12) | 0.0366 (12) | −0.0035 (11) | 0.0087 (11) | −0.0022 (10) |
| N6 | 0.0341 (10) | 0.0359 (10) | 0.0500 (13) | 0.0014 (8) | 0.0067 (9) | −0.0026 (9) |
| O1 | 0.0673 (15) | 0.0633 (15) | 0.140 (2) | 0.0261 (12) | 0.0334 (16) | 0.0306 (15) |
| O2 | 0.149 (3) | 0.0583 (15) | 0.135 (3) | 0.0392 (16) | 0.052 (2) | −0.0139 (16) |
| O3 | 0.0600 (12) | 0.0658 (12) | 0.0397 (10) | 0.0221 (10) | −0.0030 (9) | −0.0134 (9) |
| O4 | 0.128 (2) | 0.0933 (18) | 0.0613 (15) | 0.0675 (16) | −0.0387 (14) | −0.0269 (13) |
| O5 | 0.0998 (19) | 0.121 (2) | 0.0703 (16) | 0.0799 (17) | 0.0031 (13) | −0.0105 (15) |
| O6 | 0.0896 (16) | 0.0642 (13) | 0.0453 (11) | 0.0148 (11) | 0.0250 (11) | −0.0069 (9) |
| O7 | 0.0718 (14) | 0.0810 (15) | 0.0410 (11) | 0.0095 (11) | −0.0104 (10) | −0.0080 (10) |
| O8 | 0.0686 (13) | 0.0686 (13) | 0.0667 (14) | 0.0360 (11) | 0.0026 (11) | 0.0090 (11) |
| O9 | 0.0672 (13) | 0.0888 (16) | 0.0532 (13) | 0.0298 (12) | 0.0125 (10) | −0.0155 (11) |
| O10 | 0.0654 (13) | 0.0531 (11) | 0.0411 (11) | 0.0203 (10) | 0.0008 (9) | −0.0079 (9) |
| C1—N2 | 1.384 (3) | C10—N5 | 1.437 (3) |
| C1—C2 | 1.385 (4) | C11—C12 | 1.371 (3) |
| C1—C6 | 1.391 (4) | C11—H11 | 0.9300 |
| C2—C3 | 1.380 (4) | C12—N6 | 1.454 (3) |
| C2—H2 | 0.9300 | N1—N2 | 1.403 (3) |
| C3—C4 | 1.370 (4) | N1—H1A | 0.866 (10) |
| C3—H3 | 0.9300 | N1—H1B | 0.873 (10) |
| C4—C5 | 1.371 (4) | N1—H1C | 0.874 (10) |
| C4—N3 | 1.462 (3) | N2—H2A | 0.857 (10) |
| C5—C6 | 1.367 (4) | N3—O1 | 1.222 (4) |
| C5—H5 | 0.9300 | N3—O2 | 1.227 (4) |
| C6—H6 | 0.9300 | N4—O4 | 1.190 (3) |
| C7—O3 | 1.245 (3) | N4—O5 | 1.193 (3) |
| C7—C12 | 1.452 (3) | N5—O7 | 1.221 (3) |
| C7—C8 | 1.459 (3) | N5—O6 | 1.231 (3) |
| C8—C9 | 1.362 (3) | N6—O8 | 1.212 (3) |
| C8—N4 | 1.448 (3) | N6—O9 | 1.213 (3) |
| C9—C10 | 1.376 (3) | O10—H10B | 0.825 (10) |
| C9—H9 | 0.9300 | O10—H10A | 0.820 (10) |
| C10—C11 | 1.378 (3) | ||
| N2—C1—C2 | 122.3 (2) | C12—C11—H11 | 120.4 |
| N2—C1—C6 | 117.6 (2) | C10—C11—H11 | 120.4 |
| C2—C1—C6 | 120.0 (2) | C11—C12—C7 | 124.0 (2) |
| C3—C2—C1 | 119.7 (3) | C11—C12—N6 | 115.8 (2) |
| C3—C2—H2 | 120.1 | C7—C12—N6 | 120.2 (2) |
| C1—C2—H2 | 120.1 | N2—N1—H1A | 111 (2) |
| C4—C3—C2 | 119.1 (3) | N2—N1—H1B | 102 (2) |
| C4—C3—H3 | 120.4 | H1A—N1—H1B | 112.3 (15) |
| C2—C3—H3 | 120.4 | N2—N1—H1C | 108 (2) |
| C3—C4—C5 | 121.9 (2) | H1A—N1—H1C | 112.3 (15) |
| C3—C4—N3 | 119.1 (3) | H1B—N1—H1C | 110.8 (15) |
| C5—C4—N3 | 119.0 (3) | C1—N2—N1 | 119.9 (2) |
| C6—C5—C4 | 119.3 (3) | C1—N2—H2A | 116 (2) |
| C6—C5—H5 | 120.3 | N1—N2—H2A | 111 (2) |
| C4—C5—H5 | 120.3 | O1—N3—O2 | 123.9 (3) |
| C5—C6—C1 | 119.9 (3) | O1—N3—C4 | 118.6 (3) |
| C5—C6—H6 | 120.0 | O2—N3—C4 | 117.5 (3) |
| C1—C6—H6 | 120.0 | O4—N4—O5 | 120.0 (2) |
| O3—C7—C12 | 124.0 (2) | O4—N4—C8 | 119.8 (2) |
| O3—C7—C8 | 124.4 (2) | O5—N4—C8 | 120.2 (2) |
| C12—C7—C8 | 111.6 (2) | O7—N5—O6 | 122.6 (2) |
| C9—C8—N4 | 115.8 (2) | O7—N5—C10 | 119.2 (2) |
| C9—C8—C7 | 124.1 (2) | O6—N5—C10 | 118.2 (2) |
| N4—C8—C7 | 120.2 (2) | O8—N6—O9 | 121.8 (2) |
| C8—C9—C10 | 119.5 (2) | O8—N6—C12 | 118.6 (2) |
| C8—C9—H9 | 120.3 | O9—N6—C12 | 119.6 (2) |
| C10—C9—H9 | 120.3 | C7—O3—H10A | 134.2 (9) |
| C9—C10—C11 | 121.5 (2) | H1B—O10—H10B | 108 (3) |
| C9—C10—N5 | 119.5 (2) | H1B—O10—H10A | 114 (2) |
| C11—C10—N5 | 119.0 (2) | H10B—O10—H10A | 110.2 (17) |
| C12—C11—C10 | 119.2 (2) | ||
| N2—C1—C2—C3 | −177.3 (3) | C8—C7—C12—C11 | 3.9 (3) |
| C6—C1—C2—C3 | −0.4 (4) | O3—C7—C12—N6 | 4.4 (4) |
| C1—C2—C3—C4 | 0.1 (4) | C8—C7—C12—N6 | −177.02 (19) |
| C2—C3—C4—C5 | 0.5 (4) | C2—C1—N2—N1 | −24.1 (4) |
| C2—C3—C4—N3 | −178.4 (2) | C6—C1—N2—N1 | 159.0 (3) |
| C3—C4—C5—C6 | −0.7 (4) | C3—C4—N3—O1 | 3.9 (4) |
| N3—C4—C5—C6 | 178.3 (3) | C5—C4—N3—O1 | −175.0 (3) |
| C4—C5—C6—C1 | 0.3 (4) | C3—C4—N3—O2 | −177.1 (3) |
| N2—C1—C6—C5 | 177.3 (3) | C5—C4—N3—O2 | 3.9 (4) |
| C2—C1—C6—C5 | 0.3 (4) | C9—C8—N4—O4 | −178.5 (3) |
| O3—C7—C8—C9 | 174.6 (2) | C7—C8—N4—O4 | 0.1 (4) |
| C12—C7—C8—C9 | −3.9 (3) | C9—C8—N4—O5 | 1.5 (4) |
| O3—C7—C8—N4 | −3.9 (4) | C7—C8—N4—O5 | −179.9 (3) |
| C12—C7—C8—N4 | 177.60 (19) | C9—C10—N5—O7 | −175.1 (2) |
| N4—C8—C9—C10 | −179.9 (2) | C11—C10—N5—O7 | 6.1 (3) |
| C7—C8—C9—C10 | 1.5 (3) | C9—C10—N5—O6 | 6.8 (3) |
| C8—C9—C10—C11 | 1.3 (3) | C11—C10—N5—O6 | −172.1 (2) |
| C8—C9—C10—N5 | −177.5 (2) | C11—C12—N6—O8 | 11.2 (3) |
| C9—C10—C11—C12 | −1.3 (3) | C7—C12—N6—O8 | −167.9 (2) |
| N5—C10—C11—C12 | 177.5 (2) | C11—C12—N6—O9 | −167.3 (2) |
| C10—C11—C12—C7 | −1.6 (3) | C7—C12—N6—O9 | 13.6 (3) |
| C10—C11—C12—N6 | 179.32 (19) | C12—C7—O3—H10A | 155.2 (11) |
| O3—C7—C12—C11 | −174.6 (2) | C8—C7—O3—H10A | −23.2 (12) |
| H··· | ||||
| N1—H1 | 0.87 (1) | 2.05 (1) | 2.916 (3) | 177 (2) |
| N1—H1 | 0.87 (1) | 1.94 (1) | 2.809 (3) | 172 (2) |
| N1—H1 | 0.87 (1) | 2.56 (3) | 2.908 (3) | 105 (2) |
| N1—H1 | 0.87 (1) | 2.08 (1) | 2.947 (3) | 170 (2) |
| N2—H2 | 0.86 (1) | 2.13 (2) | 2.868 (3) | 144 (3) |
| O10—H10 | 0.82 (1) | 2.09 (2) | 2.832 (3) | 150 (3) |
| O10—H10 | 0.82 (1) | 2.24 (2) | 2.743 (3) | 120 (2) |
| O10—H10 | 0.83 (1) | 2.05 (1) | 2.869 (3) | 171 (3) |
| O10—H10 | 0.83 (1) | 2.43 (3) | 2.898 (3) | 117 (3) |
| C11—H11···O8iv | 0.93 | 2.51 | 3.433 (3) | 172 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.87 (1) | 2.05 (1) | 2.916 (3) | 177 (2) |
| N1—H1 | 0.87 (1) | 1.94 (1) | 2.809 (3) | 172 (2) |
| N1—H1 | 0.87 (1) | 2.56 (3) | 2.908 (3) | 105 (2) |
| N1—H1 | 0.87 (1) | 2.08 (1) | 2.947 (3) | 170 (2) |
| N2—H2 | 0.86 (1) | 2.13 (2) | 2.868 (3) | 144 (3) |
| O10—H10 | 0.82 (1) | 2.09 (2) | 2.832 (3) | 150 (3) |
| O10—H10 | 0.82 (1) | 2.24 (2) | 2.743 (3) | 120 (2) |
| O10—H10 | 0.83 (1) | 2.05 (1) | 2.869 (3) | 171 (3) |
| O10—H10 | 0.83 (1) | 2.43 (3) | 2.898 (3) | 117 (3) |
| C11—H11⋯O8iv | 0.93 | 2.51 | 3.433 (3) | 172 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .