Literature DB >> 24526964

Dimethyl 2-[2-(2,4,6-tri-chloro-phen-yl)hydrazin-1-yl-idene]butane-dioate.

M K Usha1, Shobhitha Shetty2, B Kalluraya2, Rajni Kant3, Vivek K Gupta3, D Revannasiddaiah1.   

Abstract

In the title compound, C12H11Cl3N2O4, the dihedral angle between the aromatic ring and the hydrazine (NH-N=C) grouping is 52.2 (3)°. The butanedioate groups exhibit planar conformations. An intra-molecular N-H⋯O hydrogen bond links the N-H group of the hydrazine to one of the meth-oxy groups of the butane-dioate moiety. In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds and π-π inter-actions are also observed [centroid-centroid separation = 3.535 (1) Å].

Entities:  

Year:  2013        PMID: 24526964      PMCID: PMC3914063          DOI: 10.1107/S160053681303242X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological activity of halo-substituted derivatives, see: Kees et al. (1996 ▶). For the use of the title compound in the synthesis of pyrazoles, see: Palacios et al. (1999 ▶). For the biological activity of pyrazoles, see: Palacios et al. (1999 ▶); Lee et al. (2003 ▶); Nithinchandra et al. (2012 ▶); Genin et al. (2000 ▶); Reddy et al. (2008 ▶); Kees et al. (1996 ▶). For a related structure, see: Huang et al. (2011 ▶).

Experimental

Crystal data

C12H11Cl3N2O4 M = 353.58 Orthorhombic, a = 7.0182 (5) Å b = 16.0165 (12) Å c = 26.7488 (15) Å V = 3006.8 (4) Å3 Z = 8 Mo Kα radiation μ = 0.63 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▶) T min = 0.716, T max = 1.000 7083 measured reflections 2954 independent reflections 1844 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.118 S = 1.03 2954 reflections 195 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S160053681303242X/sj5364sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681303242X/sj5364Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S160053681303242X/sj5364Isup3.cml Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H11Cl3N2O4F(000) = 1440
Mr = 353.58Dx = 1.562 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 1944 reflections
a = 7.0182 (5) Åθ = 3.9–27.4°
b = 16.0165 (12) ŵ = 0.63 mm1
c = 26.7488 (15) ÅT = 293 K
V = 3006.8 (4) Å3Block, white
Z = 80.30 × 0.20 × 0.20 mm
Oxford Diffraction Xcalibur Sapphire3 diffractometer2954 independent reflections
Radiation source: fine-focus sealed tube1844 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.040
Detector resolution: 16.1049 pixels mm-1θmax = 26.0°, θmin = 3.9°
ω scansh = −7→8
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)k = −19→11
Tmin = 0.716, Tmax = 1.000l = −32→30
7083 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.118w = 1/[σ2(Fo2) + (0.0358P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.006
2954 reflectionsΔρmax = 0.26 e Å3
195 parametersΔρmin = −0.24 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0029 (4)
Experimental. CrysAlis PRO, Agilent Technologies, Version 1.171.36.28 (release 01–02-2013 CrysAlis171. NET) (compiled Feb 1 2013,16:14:44) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl70.13759 (16)0.09353 (6)0.31855 (3)0.0641 (3)
Cl90.09570 (15)−0.23591 (5)0.27554 (3)0.0589 (3)
Cl80.16340 (14)−0.01155 (7)0.12827 (3)0.0640 (3)
O210.4517 (4)−0.22006 (15)0.47244 (7)0.0604 (7)
N110.2602 (4)−0.14140 (16)0.36258 (8)0.0385 (6)
N100.1266 (4)−0.08714 (18)0.34507 (9)0.0406 (7)
O190.5314 (3)−0.24056 (15)0.39230 (8)0.0572 (7)
O150.2372 (4)0.01540 (15)0.43653 (8)0.0582 (7)
C30.1464 (4)0.0307 (2)0.22574 (11)0.0443 (8)
H30.15100.08590.21500.053*
C120.2654 (4)−0.15507 (19)0.41006 (10)0.0385 (8)
C10.1339 (4)−0.0696 (2)0.29355 (10)0.0344 (7)
O170.2154 (4)−0.02745 (18)0.51588 (9)0.0796 (9)
C60.1257 (4)−0.13302 (19)0.25794 (11)0.0385 (8)
C50.1340 (4)−0.1159 (2)0.20686 (11)0.0429 (8)
H50.1315−0.15890.18350.051*
C130.1318 (5)−0.1207 (2)0.44935 (11)0.0459 (9)
H13A0.0081−0.11110.43420.055*
H13B0.1158−0.16220.47540.055*
C40.1460 (4)−0.0342 (2)0.19178 (12)0.0459 (9)
C20.1399 (4)0.0117 (2)0.27610 (11)0.0401 (8)
C180.4236 (5)−0.2085 (2)0.42838 (12)0.0437 (8)
C140.1996 (5)−0.0411 (2)0.47251 (12)0.0508 (9)
C160.3100 (6)0.0954 (2)0.45282 (14)0.0744 (12)
H16A0.33220.13030.42420.112*
H16B0.42750.08740.47060.112*
H16C0.21870.12170.47440.112*
C200.6937 (6)−0.2892 (3)0.40768 (13)0.0762 (13)
H20A0.7602−0.30900.37870.114*
H20B0.6515−0.33580.42730.114*
H20C0.7775−0.25500.42730.114*
H100.096 (5)−0.044 (2)0.3640 (11)0.050 (10)*
U11U22U33U12U13U23
Cl70.0891 (8)0.0417 (5)0.0615 (6)−0.0035 (5)0.0025 (5)−0.0015 (4)
Cl90.0786 (7)0.0401 (5)0.0580 (6)−0.0024 (5)−0.0102 (4)0.0033 (4)
Cl80.0631 (6)0.0898 (8)0.0393 (5)−0.0039 (6)−0.0063 (4)0.0186 (5)
O210.0808 (18)0.0676 (18)0.0327 (13)0.0156 (15)−0.0090 (12)0.0032 (11)
N110.0441 (16)0.0355 (15)0.0359 (14)0.0012 (13)−0.0024 (11)0.0004 (12)
N100.0456 (16)0.0408 (16)0.0353 (16)0.0085 (14)0.0012 (12)0.0040 (14)
O190.0691 (16)0.0619 (17)0.0406 (13)0.0275 (14)0.0008 (12)0.0060 (11)
O150.0717 (18)0.0510 (16)0.0519 (14)−0.0054 (14)0.0097 (13)−0.0132 (12)
C30.0340 (17)0.050 (2)0.049 (2)−0.0022 (17)−0.0002 (14)0.0149 (18)
C120.0480 (19)0.0361 (18)0.0314 (16)−0.0027 (16)−0.0009 (13)0.0017 (13)
C10.0289 (16)0.0398 (19)0.0344 (17)0.0020 (15)0.0001 (12)0.0065 (14)
O170.109 (2)0.090 (2)0.0399 (14)0.018 (2)−0.0080 (14)−0.0129 (15)
C60.0330 (16)0.0365 (19)0.0461 (19)0.0000 (15)−0.0038 (14)0.0096 (15)
C50.0390 (18)0.055 (2)0.0346 (18)0.0054 (18)−0.0061 (14)−0.0010 (16)
C130.055 (2)0.050 (2)0.0328 (17)0.0003 (18)0.0049 (14)−0.0002 (16)
C40.0306 (17)0.060 (2)0.0470 (19)−0.0008 (18)−0.0043 (14)0.0105 (19)
C20.0366 (17)0.0421 (19)0.0415 (19)−0.0009 (16)0.0009 (14)0.0031 (15)
C180.058 (2)0.0343 (18)0.0390 (19)−0.0038 (17)−0.0011 (16)−0.0001 (15)
C140.049 (2)0.062 (2)0.041 (2)0.014 (2)0.0062 (16)−0.0017 (18)
C160.091 (3)0.045 (2)0.087 (3)0.000 (2)0.001 (2)−0.016 (2)
C200.081 (3)0.081 (3)0.067 (3)0.043 (3)−0.002 (2)0.008 (2)
Cl7—C21.735 (3)C12—C131.512 (4)
Cl9—C61.727 (3)C1—C21.383 (4)
Cl8—C41.741 (3)C1—C61.394 (4)
O21—C181.209 (3)O17—C141.186 (3)
N11—C121.289 (3)C6—C51.395 (4)
N11—N101.362 (3)C5—C41.372 (5)
N10—C11.407 (4)C5—H50.9300
N10—H100.88 (3)C13—C141.495 (5)
O19—C181.329 (4)C13—H13A0.9700
O19—C201.440 (4)C13—H13B0.9700
O15—C141.348 (4)C16—H16A0.9600
O15—C161.447 (4)C16—H16B0.9600
C3—C21.382 (4)C16—H16C0.9600
C3—C41.380 (5)C20—H20A0.9600
C3—H30.9300C20—H20B0.9600
C12—C181.485 (4)C20—H20C0.9600
C12—N11—N10117.8 (3)H13A—C13—H13B107.7
N11—N10—C1116.1 (2)C5—C4—C3121.7 (3)
N11—N10—H10118 (2)C5—C4—Cl8119.3 (3)
C1—N10—H10115 (2)C3—C4—Cl8119.0 (3)
C18—O19—C20116.9 (3)C3—C2—C1122.5 (3)
C14—O15—C16116.7 (3)C3—C2—Cl7118.1 (3)
C2—C3—C4118.4 (3)C1—C2—Cl7119.3 (2)
C2—C3—H3120.8O21—C18—O19123.7 (3)
C4—C3—H3120.8O21—C18—C12122.2 (3)
N11—C12—C18116.4 (3)O19—C18—C12114.1 (3)
N11—C12—C13127.3 (3)O17—C14—O15123.8 (4)
C18—C12—C13116.3 (3)O17—C14—C13126.4 (4)
C2—C1—C6117.1 (3)O15—C14—C13109.8 (3)
C2—C1—N10121.3 (3)O15—C16—H16A109.5
C6—C1—N10121.5 (3)O15—C16—H16B109.5
C1—C6—C5121.6 (3)H16A—C16—H16B109.5
C1—C6—Cl9120.9 (2)O15—C16—H16C109.5
C5—C6—Cl9117.4 (3)H16A—C16—H16C109.5
C4—C5—C6118.5 (3)H16B—C16—H16C109.5
C4—C5—H5120.7O19—C20—H20A109.5
C6—C5—H5120.7O19—C20—H20B109.5
C14—C13—C12113.6 (3)H20A—C20—H20B109.5
C14—C13—H13A108.8O19—C20—H20C109.5
C12—C13—H13A108.8H20A—C20—H20C109.5
C14—C13—H13B108.8H20B—C20—H20C109.5
C12—C13—H13B108.8
C12—N11—N10—C1175.9 (3)C4—C3—C2—C10.3 (5)
N10—N11—C12—C18−174.7 (3)C4—C3—C2—Cl7−179.3 (2)
N10—N11—C12—C133.4 (5)C6—C1—C2—C3−2.9 (5)
N11—N10—C1—C2−127.5 (3)N10—C1—C2—C3−179.8 (3)
N11—N10—C1—C655.8 (4)C6—C1—C2—Cl7176.7 (2)
C2—C1—C6—C53.5 (4)N10—C1—C2—Cl7−0.2 (4)
N10—C1—C6—C5−179.6 (3)C20—O19—C18—O21−2.2 (5)
C2—C1—C6—Cl9−174.0 (2)C20—O19—C18—C12176.6 (3)
N10—C1—C6—Cl92.9 (4)N11—C12—C18—O21173.9 (3)
C1—C6—C5—C4−1.6 (4)C13—C12—C18—O21−4.3 (5)
Cl9—C6—C5—C4176.0 (2)N11—C12—C18—O19−4.9 (4)
N11—C12—C13—C14−92.3 (4)C13—C12—C18—O19176.8 (3)
C18—C12—C13—C1485.7 (4)C16—O15—C14—O173.2 (5)
C6—C5—C4—C3−1.2 (5)C16—O15—C14—C13−178.2 (3)
C6—C5—C4—Cl8178.2 (2)C12—C13—C14—O17−127.7 (4)
C2—C3—C4—C51.8 (5)C12—C13—C14—O1553.8 (4)
C2—C3—C4—Cl8−177.6 (2)
D—H···AD—HH···AD···AD—H···A
N10—H10···O150.87 (3)2.38 (3)3.047 (3)133 (3)
C5—H5···O19i0.932.513.397 (4)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N10—H10⋯O150.87 (3)2.38 (3)3.047 (3)133 (3)
C5—H5⋯O19i 0.932.513.397 (4)159

Symmetry code: (i) .

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