Literature DB >> 24526942

Di-chlorido-{8-[2-(di-methyl-amino)-ethyl-amino]-quinoline-κ(3) N,N',N''}zinc.

Abdul-Razak H Al-Sudani1.   

Abstract

In the title complex, [ZnCl2(C13H17N3)], the coordination sphere of the zinc cation is distorted square pyramidal. The three N atoms of the N,N',N''-tridentate 8-[2-(di-methyl-amino)-ethyl-amino]-quinoline ligand and one chloride ion constitute a considerably distorted square base. The apical site is occupied by another chloride ion. The distortion from the ideal square-pyramidal geometry is manifested by the N-Zn-N angle of 133.25 (11)°. Like most square-pyramidal metal complexes, the zinc cation is displaced towards the apical chloride ion. In the crystal, mol-ecules are linked by N-H⋯Cl inter-actions. This leads to the formation of chains of mol-ecules parallel to the b-axis direction.

Entities:  

Year:  2013        PMID: 24526942      PMCID: PMC3914037          DOI: 10.1107/S1600536813029929

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the role of the zinc cation in biochemical reactions, see: Xu et al. (2010 ▶); Jena & Manivannan (2012 ▶). For the geometry of five-coordinate zinc complexes, see: Dai & Canary (2007 ▶). For a related structure, see: Al-Sudani & Kariuki (2013 ▶).

Experimental

Crystal data

[ZnCl2(C13H17N3)] M = 351.57 Orthorhombic, a = 23.6403 (6) Å b = 7.5682 (2) Å c = 8.0329 (3) Å V = 1437.20 (8) Å3 Z = 4 Mo Kα radiation μ = 2.07 mm−1 T = 150 K 0.17 × 0.05 × 0.04 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.720, T max = 0.922 6701 measured reflections 2638 independent reflections 2422 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.066 S = 1.07 2638 reflections 174 parameters 1 restraint H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.38 e Å−3 Absolute structure: Flack (1983 ▶), 873 Friedel pairs Absolute structure parameter: −0.002 (15) Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX publication routines (Farrugia, 2012 ▶) and ACD/Chemsketch (Advanced Chemistry Development, 2008 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813029929/hg5348sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813029929/hg5348Isup2.hkl Additional supporting information: crystallographic information; 3D view; checkCIF report
[ZnCl2(C13H17N3)]F(000) = 720
Mr = 351.57Dx = 1.625 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 2422 reflections
a = 23.6403 (6) Åθ = 2.8–27.5°
b = 7.5682 (2) ŵ = 2.07 mm1
c = 8.0329 (3) ÅT = 150 K
V = 1437.20 (8) Å3Block, colourless
Z = 40.17 × 0.05 × 0.04 mm
Nonius KappaCCD diffractometer2638 independent reflections
Radiation source: fine-focus sealed tube2422 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.043
CCD slices, ω and phi scansθmax = 27.5°, θmin = 2.8°
Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997)h = −30→23
Tmin = 0.720, Tmax = 0.922k = −9→9
6701 measured reflectionsl = −8→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H-atom parameters constrained
wR(F2) = 0.066w = 1/[σ2(Fo2) + (0.0224P)2 + 0.8402P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2638 reflectionsΔρmax = 0.31 e Å3
174 parametersΔρmin = −0.38 e Å3
1 restraintAbsolute structure: Flack (1983), 873 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: −0.002 (15)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.97979 (13)1.0311 (4)0.7265 (6)0.0244 (7)
H10.96111.13290.76850.029*
C21.03902 (13)1.0354 (5)0.7106 (7)0.0280 (8)
H21.05951.13800.74220.034*
C31.06704 (15)0.8905 (5)0.6491 (5)0.0267 (9)
H31.10690.89240.63500.032*
C41.03549 (14)0.7389 (5)0.6071 (5)0.0213 (8)
C50.97605 (13)0.7445 (5)0.6265 (4)0.0171 (7)
C60.94322 (14)0.5944 (5)0.5872 (4)0.0188 (7)
C70.96889 (14)0.4450 (5)0.5276 (5)0.0241 (8)
H70.94670.34480.49920.029*
C81.02845 (15)0.4391 (5)0.5079 (5)0.0250 (8)
H81.04580.33440.46730.030*
C91.06105 (15)0.5815 (5)0.5466 (5)0.0232 (8)
H91.10090.57570.53320.028*
C100.84685 (13)0.5713 (5)0.4719 (5)0.0231 (8)
H10A0.84540.44280.44940.028*
H10B0.86170.63190.37180.028*
C110.78850 (14)0.6401 (4)0.5145 (5)0.0219 (8)
H11A0.76270.61970.41930.026*
H11B0.77350.57460.61160.026*
C120.79589 (17)0.9336 (6)0.3988 (5)0.0331 (9)
H12A0.83110.90080.34250.050*
H12B0.79661.06000.42520.050*
H12C0.76370.90830.32550.050*
C130.73599 (14)0.8808 (5)0.6338 (5)0.0283 (9)
H13A0.73481.00910.64970.043*
H13B0.73300.82190.74200.043*
H13C0.70440.84430.56270.043*
Cl10.83558 (3)0.77871 (12)0.97688 (12)0.02365 (19)
Cl20.84770 (3)1.18659 (10)0.73045 (17)0.02760 (19)
N10.94882 (11)0.8923 (3)0.6858 (3)0.0183 (7)
N20.88348 (11)0.6075 (4)0.6168 (4)0.0179 (6)
H2A0.87450.52450.69800.021*
N30.79023 (12)0.8311 (4)0.5534 (4)0.0199 (6)
Zn10.859314 (13)0.87704 (4)0.71978 (6)0.01701 (10)
U11U22U33U12U13U23
C10.0281 (15)0.0196 (16)0.0254 (17)−0.0024 (12)0.000 (2)−0.002 (2)
C20.0242 (15)0.0246 (18)0.035 (2)−0.0062 (13)−0.002 (2)−0.001 (2)
C30.0205 (16)0.028 (2)0.031 (2)−0.0013 (15)−0.0014 (16)−0.0002 (18)
C40.0220 (16)0.025 (2)0.0166 (17)−0.0018 (15)0.0042 (14)−0.0004 (16)
C50.0207 (15)0.0140 (17)0.0165 (16)0.0013 (14)0.0012 (14)0.0005 (15)
C60.0187 (16)0.0246 (19)0.0131 (17)0.0030 (15)0.0007 (14)0.0003 (14)
C70.0251 (18)0.021 (2)0.026 (2)0.0027 (16)0.0005 (16)−0.0024 (16)
C80.0277 (18)0.0224 (19)0.025 (2)0.0068 (16)0.0032 (16)−0.0026 (17)
C90.0220 (17)0.026 (2)0.0214 (19)0.0028 (16)0.0027 (15)0.0012 (16)
C100.0215 (16)0.0243 (19)0.0236 (18)0.0005 (14)−0.0021 (17)−0.0074 (18)
C110.0207 (17)0.0186 (19)0.026 (2)0.0013 (14)−0.0035 (15)−0.0046 (16)
C120.040 (2)0.034 (2)0.025 (2)0.0058 (19)−0.0013 (19)0.0083 (19)
C130.0190 (16)0.032 (2)0.034 (2)0.0074 (16)−0.0038 (16)−0.0050 (19)
Cl10.0250 (4)0.0253 (4)0.0207 (4)−0.0014 (4)0.0019 (4)0.0020 (4)
Cl20.0258 (3)0.0148 (4)0.0422 (5)0.0004 (3)0.0018 (6)−0.0004 (6)
N10.0180 (12)0.0160 (15)0.021 (2)−0.0015 (10)−0.0003 (12)0.0007 (12)
N20.0149 (13)0.0185 (16)0.0203 (15)−0.0007 (12)−0.0002 (12)−0.0002 (12)
N30.0216 (14)0.0205 (16)0.0175 (15)0.0039 (12)0.0026 (12)0.0011 (13)
Zn10.01713 (16)0.01476 (18)0.01915 (18)0.00002 (13)0.0011 (2)−0.0008 (2)
C1—N11.321 (4)C10—H10A0.9900
C1—C21.406 (4)C10—H10B0.9900
C1—H10.9500C11—N31.480 (4)
C2—C31.373 (5)C11—H11A0.9900
C2—H20.9500C11—H11B0.9900
C3—C41.409 (5)C12—N31.470 (5)
C3—H30.9500C12—H12A0.9800
C4—C51.414 (4)C12—H12B0.9800
C4—C91.421 (5)C12—H12C0.9800
C5—N11.376 (4)C13—N31.484 (4)
C5—C61.412 (5)C13—H13A0.9800
C6—C71.369 (5)C13—H13B0.9800
C6—N21.436 (4)C13—H13C0.9800
C7—C81.418 (5)Cl1—Zn12.2659 (11)
C7—H70.9500Cl2—Zn12.3604 (8)
C8—C91.361 (5)N1—Zn12.136 (3)
C8—H80.9500N2—Zn12.274 (3)
C9—H90.9500N2—H2A0.9300
C10—N21.476 (5)N3—Zn12.139 (3)
C10—C111.513 (4)
N1—C1—C2123.2 (3)H11A—C11—H11B108.0
N1—C1—H1118.4N3—C12—H12A109.5
C2—C1—H1118.4N3—C12—H12B109.5
C3—C2—C1119.6 (3)H12A—C12—H12B109.5
C3—C2—H2120.2N3—C12—H12C109.5
C1—C2—H2120.2H12A—C12—H12C109.5
C2—C3—C4118.7 (3)H12B—C12—H12C109.5
C2—C3—H3120.6N3—C13—H13A109.5
C4—C3—H3120.6N3—C13—H13B109.5
C3—C4—C5118.4 (3)H13A—C13—H13B109.5
C3—C4—C9122.6 (3)N3—C13—H13C109.5
C5—C4—C9119.0 (3)H13A—C13—H13C109.5
N1—C5—C6118.3 (3)H13B—C13—H13C109.5
N1—C5—C4121.8 (3)C1—N1—C5118.2 (3)
C6—C5—C4119.8 (3)C1—N1—Zn1124.1 (2)
C7—C6—C5119.9 (3)C5—N1—Zn1117.6 (2)
C7—C6—N2123.4 (3)C6—N2—C10115.7 (3)
C5—C6—N2116.6 (3)C6—N2—Zn1111.7 (2)
C6—C7—C8120.3 (3)C10—N2—Zn1107.8 (2)
C6—C7—H7119.8C6—N2—H2A107.1
C8—C7—H7119.8C10—N2—H2A107.1
C9—C8—C7120.8 (3)Zn1—N2—H2A107.1
C9—C8—H8119.6C12—N3—C11109.8 (3)
C7—C8—H8119.6C12—N3—C13108.2 (3)
C8—C9—C4120.1 (3)C11—N3—C13108.4 (3)
C8—C9—H9120.0C12—N3—Zn1111.9 (2)
C4—C9—H9120.0C11—N3—Zn1108.2 (2)
N2—C10—C11107.0 (3)C13—N3—Zn1110.3 (2)
N2—C10—H10A110.3N1—Zn1—N3133.25 (11)
C11—C10—H10A110.3N1—Zn1—Cl1112.30 (8)
N2—C10—H10B110.3N3—Zn1—Cl1109.10 (8)
C11—C10—H10B110.3N1—Zn1—N275.72 (10)
H10A—C10—H10B108.6N3—Zn1—N279.56 (10)
N3—C11—C10111.0 (3)Cl1—Zn1—N295.69 (8)
N3—C11—H11A109.4N1—Zn1—Cl293.79 (8)
C10—C11—H11A109.4N3—Zn1—Cl295.46 (8)
N3—C11—H11B109.4Cl1—Zn1—Cl2105.31 (4)
C10—C11—H11B109.4N2—Zn1—Cl2158.87 (8)
D—H···AD—HH···AD···AD—H···A
N2—H2A···Cl2i0.932.653.420 (3)141
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯Cl2i 0.932.653.420 (3)141

Symmetry code: (i) .

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