Literature DB >> 24526062

Development of an automated culture system for laboratory evolution.

Takaaki Horinouchi1, Teruaki Minamoto2, Shingo Suzuki1, Hiroshi Shimizu2, Chikara Furusawa3.   

Abstract

Laboratory evolution provides phenotype-genotype mappings and quantitative analysis of selective pressures, giving important insights about evolutionary dynamics. Moreover, parallel laboratory evolution clarifies which phenotypic and genotypic changes are inevitable for adaptive evolution. Such parallel experiments, however, remain labor-intensive. In this study, to facilitate massive parallel laboratory evolution, we developed an automated culture system that can maintain hundreds of independent culture series in exponential growth phase under various culture conditions. We demonstrate the performance of this automated culture system using the laboratory evolution of Escherichia coli under various stressors.
© 2014 Society for Laboratory Automation and Screening.

Entities:  

Keywords:  Escherichia coli; automated culture system; laboratory evolution

Mesh:

Year:  2014        PMID: 24526062     DOI: 10.1177/2211068214521417

Source DB:  PubMed          Journal:  J Lab Autom        ISSN: 2211-0682


  8 in total

Review 1.  Experimental Design, Population Dynamics, and Diversity in Microbial Experimental Evolution.

Authors:  Bram Van den Bergh; Toon Swings; Maarten Fauvart; Jan Michiels
Journal:  Microbiol Mol Biol Rev       Date:  2018-07-25       Impact factor: 11.056

Review 2.  Understanding metabolic adaptation by using bacterial laboratory evolution and trans-omics analysis.

Authors:  Takaaki Horinouchi; Chikara Furusawa
Journal:  Biophys Rev       Date:  2020-05-11

Review 3.  The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology.

Authors:  Troy E Sandberg; Michael J Salazar; Liam L Weng; Bernhard O Palsson; Adam M Feist
Journal:  Metab Eng       Date:  2019-08-08       Impact factor: 9.783

4.  Systematic molecular evolution enables robust biomolecule discovery.

Authors:  Erika A DeBenedictis; Emma J Chory; Dana W Gretton; Brian Wang; Stefan Golas; Kevin M Esvelt
Journal:  Nat Methods       Date:  2021-12-30       Impact factor: 28.547

5.  High-throughput laboratory evolution reveals evolutionary constraints in Escherichia coli.

Authors:  Tomoya Maeda; Junichiro Iwasawa; Hazuki Kotani; Natsue Sakata; Masako Kawada; Takaaki Horinouchi; Aki Sakai; Kumi Tanabe; Chikara Furusawa
Journal:  Nat Commun       Date:  2020-11-24       Impact factor: 14.919

6.  Enabling high-throughput biology with flexible open-source automation.

Authors:  Emma J Chory; Dana W Gretton; Erika A DeBenedictis; Kevin M Esvelt
Journal:  Mol Syst Biol       Date:  2021-03       Impact factor: 11.429

7.  Prediction of Cross-resistance and Collateral Sensitivity by Gene Expression profiles and Genomic Mutations.

Authors:  Takaaki Horinouchi; Shingo Suzuki; Hazuki Kotani; Kumi Tanabe; Natsue Sakata; Hiroshi Shimizu; Chikara Furusawa
Journal:  Sci Rep       Date:  2017-10-25       Impact factor: 4.379

8.  Raman spectral signature reflects transcriptomic features of antibiotic resistance in Escherichia coli.

Authors:  Arno Germond; Taro Ichimura; Takaaki Horinouchi; Hideaki Fujita; Chikara Furusawa; Tomonobu M Watanabe
Journal:  Commun Biol       Date:  2018-07-02
  8 in total

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