Literature DB >> 24526012

The pancreatic β-cell transcriptome and integrated-omics.

David M Blodgett1, Anthony J Cura, David M Harlan.   

Abstract

PURPOSE OF REVIEW: β Cells represent one of many cell types in heterogeneous pancreatic islets and play the central role in maintaining glucose homeostasis, such that disrupting β-cell function leads to diabetes. This review summarizes the methods for isolating and characterizing β cells, and describes integrated 'omics' approaches used to define the β cell by its transcriptome and proteome. RECENT
FINDINGS: RNA sequencing and mass spectrometry-based protein identification have now identified RNA and protein profiles for mouse and human pancreatic islets and β cells, and for β-cell lines. Recent publications have outlined these profiles and, more importantly, have begun to assign the presence or absence of specific genes and regulatory molecules to β-cell function and dysfunction. Overall, researchers have focused on understanding the pathophysiology of diabetes by connecting genome, transcriptome, proteome, and regulatory RNA profiles with findings from genome-wide association studies.
SUMMARY: Studies employing these relatively new techniques promise to identify specific genes or regulatory RNAs with altered expression as β-cell function begins to deteriorate in the spiral toward the development of diabetes. The ultimate goal is to identify the potential therapeutic targets to prevent β-cell dysfunction and thereby better treat the individual with diabetes. VIDEO ABSTRACT: http://links.lww.com/COE/A5.

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Year:  2014        PMID: 24526012      PMCID: PMC4084684          DOI: 10.1097/MED.0000000000000051

Source DB:  PubMed          Journal:  Curr Opin Endocrinol Diabetes Obes        ISSN: 1752-296X            Impact factor:   3.243


  71 in total

Review 1.  Central nervous system control of food intake.

Authors:  M W Schwartz; S C Woods; D Porte; R J Seeley; D G Baskin
Journal:  Nature       Date:  2000-04-06       Impact factor: 49.962

2.  Comprehensive phosphoproteome analysis of INS-1 pancreatic β-cells using various digestion strategies coupled with liquid chromatography-tandem mass spectrometry.

Authors:  Dohyun Han; Sungyoon Moon; Yikwon Kim; Won-Kyung Ho; Kyunggon Kim; Yup Kang; Heesook Jun; Youngsoo Kim
Journal:  J Proteome Res       Date:  2012-03-14       Impact factor: 4.466

3.  Mitochondrial protein patterns correlating with impaired insulin secretion from INS-1E cells exposed to elevated glucose concentrations.

Authors:  Hanna K Nyblom; Kristofer Thorn; Meftun Ahmed; Peter Bergsten
Journal:  Proteomics       Date:  2006-10       Impact factor: 3.984

Review 4.  Transcriptome analysis using next-generation sequencing.

Authors:  Kai-Oliver Mutz; Alexandra Heilkenbrinker; Maren Lönne; Johanna-Gabriela Walter; Frank Stahl
Journal:  Curr Opin Biotechnol       Date:  2012-09-25       Impact factor: 9.740

5.  Sorting of pancreatic islet cell subpopulations by light scattering using a fluorescence-activated cell sorter.

Authors:  D A Nielsen; A Lernmark; M Berelowitz; G D Bloom; D F Steiner
Journal:  Diabetes       Date:  1982-04       Impact factor: 9.461

6.  Assessment of human pancreatic islet architecture and composition by laser scanning confocal microscopy.

Authors:  Marcela Brissova; Michael J Fowler; Wendell E Nicholson; Anita Chu; Boaz Hirshberg; David M Harlan; Alvin C Powers
Journal:  J Histochem Cytochem       Date:  2005-05-27       Impact factor: 2.479

7.  beta-Cell function in subjects spanning the range from normal glucose tolerance to overt diabetes: a new analysis.

Authors:  Ele Ferrannini; Amalia Gastaldelli; Yoshinori Miyazaki; Masafumi Matsuda; Andrea Mari; Ralph A DeFronzo
Journal:  J Clin Endocrinol Metab       Date:  2004-10-13       Impact factor: 5.958

8.  Proliferation of sorted human and rat beta cells.

Authors:  G Parnaud; D Bosco; T Berney; F Pattou; J Kerr-Conte; M Y Donath; C Bruun; T Mandrup-Poulsen; N Billestrup; P A Halban
Journal:  Diabetologia       Date:  2007-11-10       Impact factor: 10.122

9.  Protein markers for insulin-producing beta cells with higher glucose sensitivity.

Authors:  Geert A Martens; Lei Jiang; Katrijn Verhaeghen; Joanne B Connolly; Scott G Geromanos; Geert Stangé; Laurence Van Oudenhove; Bart Devreese; Karine H Hellemans; Zhidong Ling; Christiaan Van Schravendijk; Daniel G Pipeleers; Johannes P C Vissers; Frans K Gorus
Journal:  PLoS One       Date:  2010-12-06       Impact factor: 3.240

Review 10.  Mass spectrometry-based label-free quantitative proteomics.

Authors:  Wenhong Zhu; Jeffrey W Smith; Chun-Ming Huang
Journal:  J Biomed Biotechnol       Date:  2009-11-10
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  4 in total

Review 1.  Insulin-secreting β cells require a post-genomic concept.

Authors:  Fang-Xu Jiang; Grant Morahan
Journal:  World J Diabetes       Date:  2016-05-25

2.  Culturing and transcriptome profiling of progenitor-like colonies derived from adult mouse pancreas.

Authors:  Dongshen Ma; Shanshan Tang; Jing Song; Qiong Wu; Fangfang Zhang; Yun Xing; Yi Pan; Yanfeng Zhang; Jingwei Jiang; Yubin Zhang; Liang Jin
Journal:  Stem Cell Res Ther       Date:  2017-07-26       Impact factor: 6.832

3.  Comparative gene expression profiles in pancreatic islets associated with agouti yellow mutation and PACAP overexpression in mice.

Authors:  Kazuya Ikeda; Shuhei Tomimoto; Soken Tsuchiya; Ken-Ichi Hamagami; Norihito Shintani; Yukihiko Sugimoto; Atsushi Ichikawa; Atsushi Kasai; Takanobu Nakazawa; Kazuki Nagayasu; Atsuko Hayata-Takano; Akemichi Baba; Hitoshi Hashimoto
Journal:  Biochem Biophys Rep       Date:  2015-06-24

4.  Using recombinase-mediated cassette exchange to engineer MIN6 insulin-secreting cells based on a newly identified safe harbor locus.

Authors:  Asami Furukawa; Aya Tanaka; Suguru Yamaguchi; Minami Kosuda; Midori Yamana; Akiko Nagasawa; Genta Kohno; Hisamitsu Ishihara
Journal:  J Diabetes Investig       Date:  2021-09-06       Impact factor: 4.232

  4 in total

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