| Literature DB >> 24524017 |
Jae Il Yoo1, Hwa Su Kim1, Chi Won Choi2, Jung Sik Yoo1, Jae Yon Yu1, Yeong Seon Lee1.
Abstract
OBJECTIVES: The proteomic analysis of voriconazole resistant Candida glabrata strain has not yet been investigated. In this study, differentially expressed proteins of intracellular and membrane fraction from voriconazole-susceptible, susceptible dose-dependent (S-DD), resistant C. glabrata strains were compared with each other and several proteins were identified.Entities:
Keywords: Candida glabrata; Hsp70 protein; proteomic analysis; voriconazole
Year: 2013 PMID: 24524017 PMCID: PMC3922097 DOI: 10.1016/j.phrp.2013.10.001
Source DB: PubMed Journal: Osong Public Health Res Perspect ISSN: 2210-9099
Figure 1Cellular and membrane protein spot of C. glabrata strains resolved by 2D gel electrophoresis. Spots representing differentially expressed proteins that were identified by LC-Ms/Ms peptide mass fingerprinting. (a) cellular protein spot of voriconazole susceptible strain, (b) cellular protein spot of voriconazole SDD strain, (c) cellular protein spot of fluconazole susceptible strain, (d) membrane protein spot of voriconazole susceptible strain, (e) membrane protein spot of voriconazole SDD strain, (f) membrane protein spot of voriconazole resistant strain.
Differentially expressed intracellular proteins (by twofold or more), as identified by liquid chromatography-tandem mass spectrometry between voriconazole susceptible, susceptible dose-dependent, and voriconazole resistant strains
| Spot | Protein | Molecular mass (Dalton) | pI | Fold change (R/S) |
|---|---|---|---|---|
| 25 | C1-tetrahydrofolate synthase | 102,203 | 5.98 | 3.09 |
| 27 | Formyltetrahydrofolate synthetase (FTHFS) | 102,203 | 5.98 | 2.06 |
| 79 | ACO1 aconitate hydratase aconitase | 85,429 | 6.78 | 2.53 |
| 90 | Potassium efflux protein KefA | 73,694 | 5.41 | 2.05 |
| 115 | Sphingolipid long-chain base sensory protein | 40,387 | 5.54 | 2.27 |
| 116 | TKL1 transketolase | 73,704 | 6.01 | 2.50 |
| 127 | Heat shock protein 70 | 112,540 | 7.87 | 3.5 |
| 189 | 2.15 | |||
| 540 | 2.13 | |||
| 154 | Acetolactate synthase | 73,300 | 8.55 | 2.41 |
| 202 | LEU4 2-isopropylmalalate synthase | 67,290 | 5.52 | 2.51 |
| 218 | Acetyl-CoA hydrolase/transferase N-terminal domain | 58,541 | 6.16 | 2.38 |
| 228 | Phosphoribosylaminoimidazole carboxylase | 62,672 | 6.95 | 4.42 |
| 238 | Pyruvate kinase | 55,563 | 6.25 | 2.66 |
| 263 | Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes | 61,726 | 5.59 | 3.94 |
| 295 | Aldehyde dehydrogenase family | 55,937 | 5.09 | 2.03 |
| 304 | SES1 seryl-transcription RNA synthetase | 52,775 | 5.8 | 2.19 |
| 319 | Iinosine monophosphate dehydrogenase | 56,969 | 6.69 | 2.86 |
| 396 | Serine hydroxymethyltransferase | 52,271 | 6.74 | 3.1 |
| 397 | 3.6 | |||
| 411 | GDP dissociation inhibitor | 50,582 | 5.66 | 3.02 |
| 476 | Protein with specific affinity for G4 quadruplex nucleic acids | 42,134 | 8.61 | 2.33 |
| 504 | Isocitrate dehydrogenase | 46,728 | 5.23 | 2.52 |
| 505 | spP36046 | 44,592 | 4.45 | 2.78 |
| 507 | Chromosome segregation adenosine triphosphatases (ATPases) | 55,271 | 8.81 | 14.1 |
| 535 | Malate dehydrogenases (MDH) glycosomal and mitochondrial | 39,024 | 6.15 | 2.42 |
| 550 | Cyclophilin_ABH_like | 41,620 | 5.61 | 2.2 |
| 560 | Aspartate/tyrosine/aromatic aminotransferase | 45,608 | 7.2 | 2.73 |
| 576 | Quinone reductase and related Zn-dependent oxidoreductases | 40,823 | 6.01 | 2.24 |
| 603 | Branched-chain aminotransferase | 41,550 | 5.82 | 2.58 |
| 619 | Highly similar to | 38,617 | 6.51 | 2.24 |
| 636 | RPC40 DNA-directed RNA polymerase I | 37,577 | 5.22 | 2.05 |
| 645 | 36,175 | 5.02 | 3.49 | |
| 777 | Peptidase_S8 (serine proteinase) | 50,008 | 5.75 | 2.25 |
| 107 | Glycerol-3-phosphate dehydrogenase | 43,961 | 5.85 | −2.82 |
| 142 | TKL1 transketolase | 73,704 | 6.01 | −3.57 |
| 321 | F0F1 ATP synthase | 58,485 | 8.99 | −2.46 |
| 454 | Effector domain of the CAP family of transcription factors | 44,936 | 5.92 | −2.14 |
| 570 | Acetyl-CoA hydrolase | −2.53 | ||
| 609 | Oxidoreductases | 46,710 | 5.76 | −2.4 |
| 613 | −3.75 | |||
| 615 | Malate dehydrogenases glycosomal and mitochondrial | 40,487 | 9.18 | −2.14 |
| 625 | Phosphoglycerate kinase | 44,590 | 6.37 | −8.90 |
| 628 | Arginase | 35,061 | 5.27 | −3.13 |
| 633 | Highly similar to spP53252 | 35,129 | 4.68 | −3.03 |
| 723 | Uncharacterized enzymes related to aldose 1-epimerase | 33,397 | 5.06 | −3.15 |
| 774 | −2.07 | |||
| 909 | Hypothetical protein CAGL0I00616g | 2,183 | 5.37 | −9.09 |
| 912 | ATP synthase D chain, mitochondrial (ATP5H) | 19,918 | 6.64 | −2.73 |
Expression ration of voriconazole-resistant (R) over voriconazole-susceptible (S) strains. The minus sign (−) indicates decreased protein expression of voriconazole-resistant strains in comparison with voriconazole-susceptible strains.
Functional classification of identified intracellular proteins from voriconazole susceptible, susceptible dose-dependent, and resistant strains
| Protein | Function |
|---|---|
| Cell regulation | |
| Similar with bacterial potassium efflux protein KefA | Regulate iron balance |
| Sphingolipid long chain base sensory protein | Cell wall, antifungal protection |
| Heat shock protein 70, 90, 60 | Stress, protein folding |
| SES1 seryl-transcription RNA (tRNA) synthetase | Catalyze the formation of aminoacyl-tRNA |
| GDP dissociation inhibitor | GTP binding protein regulator |
| similar to | Promotes retention of newly imported proteins |
| Chromosome segregation adenosine triphosphatases (ATPases) | Cell division |
| Highly similar to | Unknown function that are induced on cell stress |
| CAP family of transcription factors | Control transcription of genes |
| Carbohydrate transport and metabolism | |
| Pyruvate decarboxylase | Related thiamine pyrophosphate-requiring enzymes |
| Hexokinase | Phosphorylates a six-carbon sugar, a hexose to a hexose phosphate |
| Amino acid transport and metabolism | |
| SAM1 S-adenosylmethionine synthetase | Catalyzes transfer of the adenosyl group of ATP to the sulfur atom of methionine |
| Energy production and conversion | |
| F1 ATP synthase | Catalyze the ATP synthesis |
| Phosphoglycerate kinase | Catalyzes the transfer of the high-energy phosphate group of 1,3-biphosphoglycerate to adenosine diphosphate |
Differentially expressed membrane proteins (by twofold or more), as identified by liquid chromatography-tandem mass spectrometry between voriconazole susceptible, susceptible dose-dependent, and voriconazole resistant strains
| Spot | Protein | Molecular mass (Dalton) | pI | Fold change (R/S) |
|---|---|---|---|---|
| 12, 314 | Enolase | 46,710 | 5.76 | 2.69, 2.56 |
| 132, 169 | Hsp70 protein | 6,635 | 5.32 | 2.18, 2.72 |
| 195, 379 | Pyruvate kinase (PK) | 54,572 | 8.26 | 2.13, 2.21 |
| 244 | Cysteine synthase | 55,388 | 5.51 | 2.34 |
| 255, 291 | Pyruvate decarboxylase | 61,726 | 5.59 | 2.12, 2.31 |
| 276 | Pyrophosphate-requiring enzymes | 46,993 | 4.46 | 3.66 |
| 284 | WD40 domain adaptor/regulatory modules in signal transduction | 46,504 | 4.44 | 2.34 |
| 457 | Phosphoglycerate kinase (PGK) | 44,590 | 6.37 | 2.77 |
| 50 | Heat shock protein | 80,983 | 4.82 | −2.43 |
| 119, 149 | Hsp70 protein | 69,469 | 4.96 | −2.43, −4.09 |
| 153, 226 | −2.18, −2.74 | |||
| 357, 552 | −2.54, −3.88 | |||
| 138, 174 | −28.0, −2.37 | |||
| 172 | −3.35 | |||
| 175 | 60,351 | 5.14 | −4.77 | |
| 229 | Hexokinase | 53,772 | 5.23 | −2.39 |
| 260 | Aldehyde dehydrogenase family | 56,131 | 6.07 | −2.11 |
| 292 | F1 adenosine triphosphate (ATP) synthase beta subunit, nucleotide-binding domain | 54,176 | 5.14 | −2.68 |
| 298 | Nicotinamide adenine dinucleotide phosphate -glutamate dehydrogenase | 49,711 | 5.58 | −3.17 |
| 360 | SAM1 S-adenosylmethionine synthetase | 41,700 | 5.10 | −2.19 |
| 398 | ATPase alpha2,Na/K | 116,305 | 5.41 | −2.56 |
| 462 | N terminal of the Stm1 protein | 29,791 | 9.65 | −6.48 |
| 465 | Adenosine kinase (AK) | 36,250 | 5.23 | −2.05 |
| 548 | Exo-beta-1,3-glucanase | 33,667 | 4.41 | −2.50 |
| 557 | Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain | 22,903 | 4.33 | −3.57 |
| 560 | Predicted epimerase, PhzC/PhzF homolog | 32,286 | 4.98 | −2.35 |
| 578 | Phosphoglycerate mutase 1 | 27,468 | 5.48 | −11.1 |
| 597 | Phosphoglycerate kinase | 18,458 | 7.85 | −2.51 |
| 602 | Mitochondrial ribosomal protein MRP8 | 24,160 | 4.73 | −2.12 |
| 616 | Ribosome antiassociation factor IF6 | 26,367 | 4.52 | −2.62 |
| 629 | TrpR binding protein WrbA | 29,728 | 6.54 | −2.08 |
| 632 | Alcohol dehydrogenase GroES-like domain | 36,721 | 6.21 | −2.25 |
| 645 | Type 1 glutamine amidotransferase (GATase1) | 25,479 | 5.16 | −4.45 |
| 658 | Phosphoglycerate kinase (PGK) | 44,590 | 6.37 | −2,15 |
| 715 | Chain A, yeast Cu, Zn enzyme superoxide dismutase | 15,714 | 5.63 | −7.19 |
Expression ration of voriconazole-resistant (R) over voriconazole-susceptible (S) strains. The minus sign (−) indicates decreased protein expression of voriconazole-resistant strains in comparison with voriconazole-susceptible strains.
Functional classification of identified membrane proteins from voriconazole susceptible, susceptible dose-dependent, and resistant strains
| Protein | Function |
|---|---|
| Cell regulation | |
| Similar with bacterial potassium efflux protein KefA | Regulate iron balance |
| Sphingolipid long-chain base sensory protein | Cell wall, antifungal protection |
| Heat shock protein 70, 90, 60 | Stress, protein folding |
| SES1 seryl-transcription RNA (tRNA) synthetase | Catalyze the formation of aminoacyl-tRNA |
| GDP dissociation inhibitor | GTP binding protein regulator |
| similar to | promotes retention of newly imported proteins |
| Chromosome segregation adenosine triphosphatases (ATPases) | Cell division |
| highly similar to | Unknown function that are induced on cell stress |
| Cu, Zn enzyme superoxide dismutase | Catalyse the conversion of superoxide radicals to oxygen |
| CAP family of transcription factors | Control transcription of genes |
| Molecular chaperone DnaK | Posttranslational modification, protein turnover, chaperones |
| Carbohydrate transport and metabolism | |
| Pyruvate decarboxylase | Related thiamine pyrophosphate-requiring enzymes |
| Hexokinase | Phosphorylates a six-carbon sugar, a hexose to a hexose phosphate |
| Amino acid transport and metabolism | |
| SAM1 S-adenosylmethionine synthetase | Catalyzes transfer of the adenosyl group of ATP to the sulfur atom of methionine |
| Elongation factor 1 beta (EF1B) | catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP |
| Energy production and conversion | |
| F1 ATP synthase | Catalyze the ATP synthesis |
| Phosphoglycerate kinase | catalyzes the transfer of the high-energy phosphate group of 1,3-biphosphoglycerate to adenosine diphosphate |