| Literature DB >> 24523589 |
Anna Leszczyńska-Rodziewicz1, Aleksandra Szczepankiewicz2, Beata Narożna2, Maria Skibińska1, Joanna Pawlak1, Monika Dmitrzak-Węglarz1, Joanna Hauser1.
Abstract
We aimed to analyzed the association between polymorphisms of the FKBP5 (FK506 binding protein 5) gene and subtypes of bipolar disorder. In the study, we included 195 bipolar disorder patients with psychotic features, 129 bipolar patients with melancholic depression, and 156 bipolar patients with a history of suicidal attempts. We found weak association between the haplotypes of the FKBP5 gene and bipolar patients with suicidal attempts. We did not find an association between polymorphisms of the FKBP5 gene and bipolar disorder with psychotic features, nor with bipolar disorder with melancholic depression. Limitations of our study are the absence of data about previous trauma exposure and the small sample size of patients, which of course can lead to false-positive results, so further validation and replication of the present findings are still needed.Entities:
Keywords: FKBP5 gene; bipolar disorder; melancholic depression; psychotic features; suicide attempts
Year: 2014 PMID: 24523589 PMCID: PMC3921086 DOI: 10.2147/NDT.S54538
Source DB: PubMed Journal: Neuropsychiatr Dis Treat ISSN: 1176-6328 Impact factor: 2.570
FKBP5 gene polymorphism description
| SNP | Substitution | Location | Method | Assay ID |
|---|---|---|---|---|
| rs1360780 | C/T | Intron 9 | TaqMan | C___8852038_10 |
| rs755658 | C/T | Intron 3 | TaqMan | C___594063_20 |
| rs9470080 | C/T | Intron 10 | TaqMan | C_____92160_10 |
| rs4713916 | A/G | Intron 10 | TaqMan | C___1979246_10 |
| rs7748266 | C/T | Intron 8 | TaqMan | C__29802748_10 |
| rs9296158 | A/G | Intron 6 | TaqMan | C____1256775_10 |
| rs9394309 | A/G | Intron 10 | TaqMan | C____1256794_20 |
| rs3800373 | A/C | 3′ UTR | TaqMan | C__27489960_10 |
Abbreviations: SNP, single-nucleotide polymorphism; FKBP5, FK506 binding protein 5; UTR, untranslated region.
Check markers for subtypes of BP for FKBP5 gene
| Number | SNP | Pos chromos | ObsHET | PredHET | HWE | % zgenotyp | MAF | Alleles |
|---|---|---|---|---|---|---|---|---|
| 1 | rs3800373 | 35650454 | 0.366 | 0.366 | 1.0 | 99.2 | 0.241 | A:C |
| 2 | rs755658 | 35657648 | 0.168 | 0.168 | 1.0 | 95.4 | 0.092 | C:T |
| 3 | rs9296158 | 35675060 | 0.365 | 0.373 | 0.5832 | 98.3 | 0.248 | G:A |
| 4 | rs7748266 | 35700722 | 0.213 | 0.226 | 0.1241 | 97.3 | 0.13 | C:T |
| 5 | rs1360780 | 35715549 | 0.365 | 0.374 | 0.4929 | 97.4 | 0.249 | C:T |
| 6 | rs9394309 | 35729759 | 0.376 | 0.387 | 0.4897 | 96.4 | 0.262 | A:G |
| 7 | rs9470080 | 35754413 | 0.399 | 0.4 | 0.9398 | 98.9 | 0.277 | C:T |
| 8 | rs4713916 | 35777961 | 0.37 | 0.379 | 0.5371 | 98.2 | 0.254 | G:A |
| 1 | rs3800373 | 35650454 | 0.367 | 0.37 | 0.879 | 98.9 | 0.245 | A:C |
| 2 | rs755658 | 35657648 | 0.168 | 0.167 | 1.0 | 95.4 | 0.092 | C:T |
| 3 | rs9296158 | 35675060 | 0.364 | 0.377 | 0.3189 | 98.3 | 0.252 | G:A |
| 4 | rs7748266 | 35700722 | 0.222 | 0.24 | 0.0375 | 97.1 | 0.139 | C:T |
| 5 | rs1360780 | 35715549 | 0.369 | 0.38 | 0.4012 | 97.2 | 0.255 | C:T |
| 6 | rs9394309 | 35729759 | 0.391 | 0.396 | 0.7577 | 96.2 | 0.272 | A:G |
| 7 | rs9470080 | 35754413 | 0.408 | 0.408 | 1.0 | 98.7 | 0.285 | C:T |
| 8 | rs4713916 | 35777961 | 0.393 | 0.387 | 0.7322 | 98.1 | 0.262 | G:A |
| 1 | rs3800373 | 35650454 | 0.365 | 0.36 | 0.7891 | 98.9 | 0.235 | A:C |
| 2 | rs755658 | 35657648 | 0.166 | 0.164 | 0.9119 | 95.6 | 0.09 | C:T |
| 3 | rs9296158 | 35675060 | 0.363 | 0.369 | 0.635 | 98.4 | 0.244 | G:A |
| 4 | rs7748266 | 35700722 | 0.208 | 0.223 | 0.0643 | 97.2 | 0.128 | C:T |
| 5 | rs1360780 | 35715549 | 0.365 | 0.373 | 0.5708 | 97.3 | 0.248 | C:T |
| 6 | rs9394309 | 35729759 | 0.377 | 0.385 | 0.5996 | 96.8 | 0.26 | A:G |
| 7 | rs9470080 | 35754413 | 0.401 | 0.399 | 0.9346 | 99.0 | 0.275 | C:T |
| 8 | rs4713916 | 35777961 | 0.372 | 0.376 | 0.8302 | 98.3 | 0.251 | G:A |
Abbreviations: FKBP5, FK506 binding protein 5; SNP, single-nucleotide polymorphism; BP, bipolar disorder; ObsHET, observed heterozygous; PredHET, predicted heterozygous; MAF, minor allele frequency; HWE, Hardy–Weinberg equilibrium; Pos chromos, chromosomal position; zgenotyp, % genotyped (=success rate or call rate).
Haplotypes of FKBP5 gene and subtypes of BP disorder
| Haplotype | Freq | Case: control frequencies | Chi-square | |
|---|---|---|---|---|
| ACGCCAC | 0.718 | 0.719, 0.718 | 0.001 | 0.9809 |
| CCATTGT | 0.117 | 0.094, 0.121 | 1.484 | 0.2232 |
| CTACTGT | 0.087 | 0.100, 0.085 | 0.624 | 0.4294 |
| ACGCCGT | 0.029 | 0.031, 0.029 | 0.038 | 0.8449 |
| CCACTAT | 0.016 | 0.027, 0.014 | 2.263 | 0.1325 |
| CCACTGT | 0.012 | 0.020, 0.011 | 1.466 | 0.2261 |
| ACGCCAC | 0.710 | 0.679, 0.718 | 2.193 | 0.1387 |
| CCATTGT | 0.122 | 0.130, 0.121 | 0.24 | 0.6239 |
| CTACTGT | 0.087 | 0.095, 0.085 | 0.383 | 0.5362 |
| ACGCCGT | 0.031 | 0.038, 0.029 | 0.926 | 0.336 |
| CCACTAT | 0.016 | 0.022, 0.014 | 1.156 | 0.2822 |
| ACGCCAC | 0.721 | 0.736, 0.718 | 0.429 | 0.5124 |
| CCATTGT | 0.112 | 0.071, 0.121 | 6.261 | 0.0123 |
| CTACTGT | 0.085 | 0.083, 0.085 | 0.019 | 0.8906 |
| ACGCCGT | 0.029 | 0.030, 0.029 | 0.009 | 0.9265 |
| CCACTAT | 0.018 | 0.033, 0.014 | 5.13 | 0.0235 |
| CCACTGT | 0.013 | 0.023, 0.011 | 2.906 | 0.0883 |
| ACATTGT | 0.010 | 0.016, 0.009 | 1.166 | 0.2802 |
Note:
Note: Indicates association.
Abbreviations: FKBP5, FK506 binding protein 5; BP, bipolar disorder; Freq, frequency.
Figure 1Relative positions and LD estimates between FKBP5 polymorphisms in the analyzed population-patients with melancholic depression.
Note: Colored squares correspond to D’ values with numerical estimates given within the squares.
Figure 3Relative positions and LD estimates between FKBP5 polymorphisms in the analyzed population-bipolar patients with suicide attempts.
Note: Colored squares correspond to D’ values with numerical estimates given within the squares.
Alleles for FKBP5 gene and subtypes of BP disorder
| Lp | SNP | Assoc allele | Case: control freq | Chi-square | |
|---|---|---|---|---|---|
| 1 | rs3800373 | C | 0.244, 0.240 | 0.017 | 0.897 |
| 2 | rs755658 | T | 0.100, 0.091 | 0.201 | 0.6543 |
| 3 | rs9296158 | A | 0.250, 0.247 | 0.008 | 0.9267 |
| 4 | rs7748266 | C | 0.898, 0.865 | 2.177 | 0.1401 |
| 5 | rs1360780 | C | 0.754, 0.750 | 0.018 | 0.8921 |
| 6 | rs9394309 | A | 0.760, 0.734 | 0.727 | 0.3939 |
| 7 | rs9470080 | T | 0.278, 0.277 | 0.001 | 0.9744 |
| 8 | rs4713916 | G | 0.766, 0.743 | 0.603 | 0.4373 |
| 1 | rs3800373 | C | 0.262, 0.240 | 0.764 | 0.382 |
| 2 | rs755658 | T | 0.094, 0.091 | 0.036 | 0.8504 |
| 3 | rs9296158 | A | 0.271, 0.247 | 0.896 | 0.3439 |
| 4 | rs7748266 | T | 0.155, 0.135 | 0.96 | 0.3271 |
| 5 | rs1360780 | T | 0.276, 0.250 | 1.097 | 0.295 |
| 6 | rs9394309 | G | 0.294, 0.266 | 1.182 | 0.2769 |
| 7 | rs9470080 | T | 0.319, 0.277 | 2.627 | 0.1051 |
| 8 | rs4713916 | A | 0.282, 0.257 | 1.002 | 0.3168 |
| 1 | rs3800373 | A | 0.790, 0.760 | 1.203 | 0.2728 |
| 2 | rs755658 | C | 0.916, 0.909 | 0.156 | 0.6924 |
| 3 | rs9296158 | G | 0.774, 0.753 | 0.5 85 | 0.4443 |
| 4 | rs7748266 | C | 0.907, 0.865 | 3.905 | 0.0481 |
| 5 | rs1360780 | C | 0.764, 0.750 | 0.245 | 0.6208 |
| 6 | rs9394309 | A | 0.767, 0.734 | 1.35 | 0.2453 |
| 7 | rs9470080 | C | 0.733, 0.723 | 0.128 | 0.7202 |
| 8 | rs4713916 | G | 0.780, 0.743 | 1.831 | 0.176 |
Note:
Indicates association.
Abbreviations: FKBP5, FK506 binding protein 5; SNP, single-nucleotide polymorphism; BP, bipolar disorder; Assoc, associated; freq, frequency.