Literature DB >> 24522260

A thermodynamic theory of microbial growth.

Elie Desmond-Le Quéméner1, Théodore Bouchez1.   

Abstract

Our ability to model the growth of microbes only relies on empirical laws, fundamentally restricting our understanding and predictive capacity in many environmental systems. In particular, the link between energy balances and growth dynamics is still not understood. Here we demonstrate a microbial growth equation relying on an explicit theoretical ground sustained by Boltzmann statistics, thus establishing a relationship between microbial growth rate and available energy. The validity of our equation was then questioned by analyzing the microbial isotopic fractionation phenomenon, which can be viewed as a kinetic consequence of the differences in energy contents of isotopic isomers used for growth. We illustrate how the associated theoretical predictions are actually consistent with recent experimental evidences. Our work links microbial population dynamics to the thermodynamic driving forces of the ecosystem, which opens the door to many biotechnological and ecological developments.

Mesh:

Year:  2014        PMID: 24522260      PMCID: PMC4817618          DOI: 10.1038/ismej.2014.7

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  15 in total

1.  Contribution to the Energetics of Evolution.

Authors:  A J Lotka
Journal:  Proc Natl Acad Sci U S A       Date:  1922-06       Impact factor: 11.205

2.  Critical analysis of some concepts proposed in ADM1.

Authors:  R Kleerebezem; M C M van Loosdrecht
Journal:  Water Sci Technol       Date:  2006       Impact factor: 1.915

3.  Variable stoichiometry with thermodynamic control in ADM1.

Authors:  J Rodríguez; J M Lema; M C M van Loosdrecht; R Kleerebezem
Journal:  Water Sci Technol       Date:  2006       Impact factor: 1.915

4.  Application of macroscopic principles to microbial metabolism.

Authors:  J A Roels
Journal:  Biotechnol Bioeng       Date:  2009-05-01       Impact factor: 4.530

5.  Impact of bioavailability restrictions on microbially induced stable isotope fractionation. 2. Experimental evidence.

Authors:  Makeba Kampara; Martin Thullner; Hans H Richnow; Hauke Harms; Lukas Y Wick
Journal:  Environ Sci Technol       Date:  2008-09-01       Impact factor: 9.028

Review 6.  The microbial engines that drive Earth's biogeochemical cycles.

Authors:  Paul G Falkowski; Tom Fenchel; Edward F Delong
Journal:  Science       Date:  2008-05-23       Impact factor: 47.728

Review 7.  Growth kinetics of suspended microbial cells: from single-substrate-controlled growth to mixed-substrate kinetics.

Authors:  K Kovárová-Kovar; T Egli
Journal:  Microbiol Mol Biol Rev       Date:  1998-09       Impact factor: 11.056

8.  Thermodynamics of growth. Non-equilibrium thermodynamics of bacterial growth. The phenomenological and the mosaic approach.

Authors:  H V Westerhoff; J S Lolkema; R Otto; K J Hellingwerf
Journal:  Biochim Biophys Acta       Date:  1982-12-31

9.  Thermodynamic efficiency of microbial growth is low but optimal for maximal growth rate.

Authors:  H V Westerhoff; K J Hellingwerf; K Van Dam
Journal:  Proc Natl Acad Sci U S A       Date:  1983-01       Impact factor: 11.205

10.  The growth of Escherichia coli in glucose-limited chemostat cultures: a re-examination of the kinetics.

Authors:  H Senn; U Lendenmann; M Snozzi; G Hamer; T Egli
Journal:  Biochim Biophys Acta       Date:  1994-12-15
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  12 in total

1.  Consistent microbial dynamics and functional community patterns derived from first principles.

Authors:  Hadrien Delattre; Elie Desmond-Le Quéméner; Christian Duquennoi; Ahlem Filali; Théodore Bouchez
Journal:  ISME J       Date:  2018-09-07       Impact factor: 10.302

2.  Energetic scaling in microbial growth.

Authors:  Salvatore Calabrese; Arjun Chakrawal; Stefano Manzoni; Philippe Van Cappellen
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-23       Impact factor: 11.205

3.  A decay effect of the growth rate associated with genome reduction in Escherichia coli.

Authors:  Kouhei Tsuchiya; Yang-Yang Cao; Masaomi Kurokawa; Kazuha Ashino; Tetsuya Yomo; Bei-Wen Ying
Journal:  BMC Microbiol       Date:  2018-09-03       Impact factor: 3.605

Review 4.  Interrogating metabolism as an electron flow system.

Authors:  Christian Zerfaß; Munehiro Asally; Orkun S Soyer
Journal:  Curr Opin Syst Biol       Date:  2019-02

Review 5.  Challenges in microbial ecology: building predictive understanding of community function and dynamics.

Authors:  Stefanie Widder; Rosalind J Allen; Thomas Pfeiffer; Thomas P Curtis; Carsten Wiuf; William T Sloan; Otto X Cordero; Sam P Brown; Babak Momeni; Wenying Shou; Helen Kettle; Harry J Flint; Andreas F Haas; Béatrice Laroche; Jan-Ulrich Kreft; Paul B Rainey; Shiri Freilich; Stefan Schuster; Kim Milferstedt; Jan R van der Meer; Tobias Groβkopf; Jef Huisman; Andrew Free; Cristian Picioreanu; Christopher Quince; Isaac Klapper; Simon Labarthe; Barth F Smets; Harris Wang; Orkun S Soyer
Journal:  ISME J       Date:  2016-03-29       Impact factor: 10.302

6.  The technological side of the microbiome.

Authors:  Willy Verstraete
Journal:  NPJ Biofilms Microbiomes       Date:  2015-03-25       Impact factor: 7.290

7.  Antibacterial surface modification of titanium implants in orthopaedics.

Authors:  Wich Orapiriyakul; Peter S Young; Laila Damiati; Penelope M Tsimbouri
Journal:  J Tissue Eng       Date:  2018-07-25       Impact factor: 7.813

8.  Enhancing CO2-Valorization Using Clostridium autoethanogenum for Sustainable Fuel and Chemicals Production.

Authors:  James K Heffernan; Kaspar Valgepea; Renato de Souza Pinto Lemgruber; Isabella Casini; Manuel Plan; Ryan Tappel; Sean D Simpson; Michael Köpke; Lars K Nielsen; Esteban Marcellin
Journal:  Front Bioeng Biotechnol       Date:  2020-03-27

9.  Hydrogenotrophic methanogens of the mammalian gut: Functionally similar, thermodynamically different-A modelling approach.

Authors:  Rafael Muñoz-Tamayo; Milka Popova; Maxence Tillier; Diego P Morgavi; Jean-Pierre Morel; Gérard Fonty; Nicole Morel-Desrosiers
Journal:  PLoS One       Date:  2019-12-11       Impact factor: 3.240

10.  Representing Organic Matter Thermodynamics in Biogeochemical Reactions via Substrate-Explicit Modeling.

Authors:  Hyun-Seob Song; James C Stegen; Emily B Graham; Joon-Yong Lee; Vanessa A Garayburu-Caruso; William C Nelson; Xingyuan Chen; J David Moulton; Timothy D Scheibe
Journal:  Front Microbiol       Date:  2020-10-23       Impact factor: 5.640

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