| Literature DB >> 24520310 |
Fitnat Yildiz1, Jiunn Fong1, Irina Sadovskaya2, Thierry Grard2, Evgeny Vinogradov3.
Abstract
The ability to form biofilms is important for environmental survival, transmission, and infectivity of Vibrio cholerae, the causative agent of cholera in humans. To form biofilms, V. cholerae produces an extracellular matrix composed of proteins, nucleic acids and a glycoconjugate, termed Vibrio exopolysaccharide (VPS). Here, we present the data on isolation and characterization of the polysaccharide part of the VPS (VPS-PS), which has the following structure: -4)-α-GulpNAcAGly3OAc-(1-4)-β-D-Glcp-(1-4)-α-Glcp-(1-4)-α-D-Galp-(1- where α-D-Glc is partially (∼20%) replaced with α-D-GlcNAc. α-GulNAcAGly is an amide between 2-acetamido-2-deoxy-α-guluronic acid and glycine. Apparently, the polysaccharide is bound to a yet unidentified component, which gives it high viscosity and completely suppresses any NMR signals belonging to the sugar chains of the VPS. The only reliable method to remove this component at present is a treatment of the whole glycoconjugate with concentrated hydrochloric acid.Entities:
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Year: 2014 PMID: 24520310 PMCID: PMC3901696 DOI: 10.1371/journal.pone.0086751
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 11H NMR spectra of the VPS before and after treatment with enzymes (50°C).
Figure 31H-13C HSQC spectrum of the VPS-PS with 1H NMR trace.
1H and 13C chemical shifts of the VPS-PS and its derivatives.
| H/C-1 | H/C-2 | H/C-3 | H/C-4 | H/C-5 | H/C-6 | ||
| α-Gal | H | 5.19 | 3.91 | 3.93 | 4.06 | 3.77 | 3.77; 3.77 |
| C | 97.9 | 69.6 | 70.3 | 80.2 | 72.5 | 61.4 | |
| α-Gal | H | 5.20 | 3.91 | 3.98 | 4.01 | 3.77 | 3.77; 3.77 |
| C | 99.5 | 69.6 | 70.0 | 78.8 | 72.5 | 61.4 | |
|
| H | 5.11 | 4.68 | 5.21 | 4.27 | 5.08 | |
| C | 98.5 | 46.1 | 68.2 | 71.3 | 68.6 | 172.2 | |
| O-Deacylated | H | 5.09 | 4.44 | 4.15 | 4.22 | 5.10 | |
| C | 99.0 | 47.1 | 65.6 | 73.9 | 67.8 | ||
| α-GlcNAc | H | 4.93 | 3.95 | 3.93 | 3.76 | 4.28 | 3.84; 3.91 |
| C | 99.6 | 55.4 | 70.3 | 80.6 | 72.2 | 61.4 | |
| α-Glc | H | 4.97 | 3.60 | 3.86 | 3.68 | 4.21 | 3.85; 3.89 |
| C | 101.5 | 73.2 | 72.9 | 80.1 | 72.3 | 61.4 | |
| β-Glc | H | 4.53 | 3.35 | 3.66 | 3.65 | 3.64 | 3.70; 3.87 |
| C | 103.8 | 75.4 | 76.1 | 78.1 | 76.7 | 61.5 | |
| Gly | H | 3.94; 4.10 | |||||
| C | 175.5 | 43.0 | |||||
|
| H | 5.18 | 4.34 | 3.97 | 4.18 | 4.82 | |
| C | 99.3 | 47.2 | 69.9 | 70.5 | 68.3 | ||
| Gly, | H | 3.91; 3.99 | |||||
| C | 43.4 |
Spectra of the polysaccharide were recorded at 500 MHz, at 50°C in D2O, OS1 at 25°C. Residue A″ belongs to the structure with GlcNAc F, instead of Glc D. NAc signal in VPS-PS at 2.04/23.3 ppm; OAc at 2.19/22.0 ppm (H/C).
Figure 4GC-MS profiles of acetylated methanolysis products selected for m/z 316 (oxonium ion from hexosaminouronic acid) of VPS-PS, ECA (ManNAcA), and O-PS from P. aeruginosa PA14 (GalNAcA).
Figure 5Mass spectra of acetylated methyl glycosides methyl esters of 2-aminouronic acids obtained by methanolysis from VPS-PS and ECA (contains ManNAcA).
Figure 2Structures of the VPS-PS and its derivative.
Figure 61H NMR spectrum of the O-deacetylated VPS-PS.
Figure 7Positive mode MS-MS spectra of the VPS-PS (top) and O-deacylated VPS-PS (bottom).