Literature DB >> 24520055

Expanding the potential of G-quadruplex structures: formation of a heterochiral TBA analogue.

Antonella Virgilio1, Michela Varra, Maria Scuotto, Antonella Capuozzo, Carlo Irace, Luciano Mayol, Veronica Esposito, Aldo Galeone.   

Abstract

In order to expand the potential applications of G-quadruplex structures, we explored the ability of heterochiral oligodeoxynucleotides based on the thrombin-binding aptamer (TBA) sequence to fold into similar complexes, with particular focus on their resistance in biological environments. A combination of CD and NMR techniques was used. Similarly to TBA, the ODN ggTTggtgtggTTgg (lower case letters indicate L residues) is able to fold into a chair-like antiparallel G-quadruplex structure, but has a slightly higher thermal stability. The discovery that heterochiral ODNs are able to form stable G-quadruplex structures opens up new possibilities for their development in several fields, as aptamers, sensors and, as recently shown, as catalysts for enantioselective reactions.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  G-quadruplexes; aptamers; biological activity; heterochiral oligonucleotides

Mesh:

Substances:

Year:  2014        PMID: 24520055     DOI: 10.1002/cbic.201300775

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  4 in total

Review 1.  In What Ways Do Synthetic Nucleotides and Natural Base Lesions Alter the Structural Stability of G-Quadruplex Nucleic Acids?

Authors:  Janos Sagi
Journal:  J Nucleic Acids       Date:  2017-10-18

2.  Site-specific replacement of the thymine methyl group by fluorine in thrombin binding aptamer significantly improves structural stability and anticoagulant activity.

Authors:  Antonella Virgilio; Luigi Petraccone; Valentina Vellecco; Mariarosaria Bucci; Michela Varra; Carlo Irace; Rita Santamaria; Antonietta Pepe; Luciano Mayol; Veronica Esposito; Aldo Galeone
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

3.  Site specific replacements of a single loop nucleoside with a dibenzyl linker may switch the activity of TBA from anticoagulant to antiproliferative.

Authors:  Maria Scuotto; Elisa Rivieccio; Alessia Varone; Daniela Corda; Mariarosaria Bucci; Valentina Vellecco; Giuseppe Cirino; Antonella Virgilio; Veronica Esposito; Aldo Galeone; Nicola Borbone; Michela Varra; Luciano Mayol
Journal:  Nucleic Acids Res       Date:  2015-08-06       Impact factor: 16.971

4.  uL3 Mediated Nucleolar Stress Pathway as a New Mechanism of Action of Antiproliferative G-quadruplex TBA Derivatives in Colon Cancer Cells.

Authors:  Annalisa Pecoraro; Antonella Virgilio; Veronica Esposito; Aldo Galeone; Giulia Russo; Annapina Russo
Journal:  Biomolecules       Date:  2020-04-10
  4 in total

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