Literature DB >> 24520020

The impact of chromatin dynamics on plant light responses and circadian clock function.

Fredy Barneche1, Jordi Malapeira2, Paloma Mas2.   

Abstract

Research on the functional properties of nucleosome structure and composition dynamics has revealed that chromatin-level regulation is an essential component of light signalling and clock function in plants, two processes that rely extensively on transcriptional controls. In particular, several types of histone post-translational modifications and chromatin-bound factors act sequentially or in combination to establish transcriptional patterns and to fine-tune the transcript abundance of a large repertoire of light-responsive genes and clock components. Cytogenetic approaches have also identified light-induced higher-order chromatin changes that dynamically organize the condensation of chromosomal domains into sub-nuclear foci containing silenced repeat elements. In this review, we report recently identified molecular actors that establish chromatin state dynamics in response to light signals such as photoperiod, intensity, and spectral quality. We also highlight the chromatin-dependent mechanisms that contribute to the 24-h circadian gene expression and its impact on plant physiology and development. The commonalities and contrasts of light- and clock-associated chromatin-based mechanisms are discussed, with particular emphasis on their impact on the selective regulation and rapid modulation of responsive genes.
© The Author 2014. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Keywords:  Chromatin; circadian clock; gene expression; histone modifications; light signalling; plant.

Mesh:

Substances:

Year:  2014        PMID: 24520020     DOI: 10.1093/jxb/eru011

Source DB:  PubMed          Journal:  J Exp Bot        ISSN: 0022-0957            Impact factor:   6.992


  29 in total

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Authors:  Alan Walton; Elisabeth Stes; Nicolas Cybulski; Michiel Van Bel; Sabrina Iñigo; Astrid Nagels Durand; Evy Timmerman; Jefri Heyman; Laurens Pauwels; Lieven De Veylder; Alain Goossens; Ive De Smet; Frederik Coppens; Sofie Goormachtig; Kris Gevaert
Journal:  Plant Cell       Date:  2016-01-07       Impact factor: 11.277

2.  Linking PHYTOCHROME-INTERACTING FACTOR to Histone Modification in Plant Shade Avoidance.

Authors:  Maolin Peng; Zepeng Li; Nana Zhou; Mengmeng Ma; Yupei Jiang; Aiwu Dong; Wen-Hui Shen; Lin Li
Journal:  Plant Physiol       Date:  2017-11-29       Impact factor: 8.340

3.  Light signaling controls nuclear architecture reorganization during seedling establishment.

Authors:  Clara Bourbousse; Imen Mestiri; Gerald Zabulon; Mickaël Bourge; Fabio Formiggini; Maria A Koini; Spencer C Brown; Paul Fransz; Chris Bowler; Fredy Barneche
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

4.  Influence of sex on genetic regulation of "drinking in the dark" alcohol consumption.

Authors:  Lauren A Vanderlinden; Laura M Saba; Beth Bennett; Paula L Hoffman; Boris Tabakoff
Journal:  Mamm Genome       Date:  2015-01-06       Impact factor: 2.957

Review 5.  Three-dimensional nuclear organization in Arabidopsis thaliana.

Authors:  Frédéric Pontvianne; Stefan Grob
Journal:  J Plant Res       Date:  2020-04-02       Impact factor: 2.629

6.  Dynamic Crowding Regulates Transcription.

Authors:  Anne R Shim; Rikkert J Nap; Kai Huang; Luay M Almassalha; Hiroaki Matusda; Vadim Backman; Igal Szleifer
Journal:  Biophys J       Date:  2019-11-15       Impact factor: 4.033

7.  PIF1-Interacting Transcription Factors and Their Binding Sequence Elements Determine the in Vivo Targeting Sites of PIF1.

Authors:  Junghyun Kim; Hyojin Kang; Jeongmoo Park; Woohyun Kim; Janghyun Yoo; Nayoung Lee; Jaewook Kim; Tae-Young Yoon; Giltsu Choi
Journal:  Plant Cell       Date:  2016-06-14       Impact factor: 11.277

8.  SHORT HYPOCOTYL1 Encodes a SMARCA3-Like Chromatin Remodeling Factor Regulating Elongation.

Authors:  Kailiang Bo; Hui Wang; Yupeng Pan; Tusar K Behera; Sudhakar Pandey; Changlong Wen; Yuhui Wang; Philipp W Simon; Yuhong Li; Jinfeng Chen; Yiqun Weng
Journal:  Plant Physiol       Date:  2016-08-24       Impact factor: 8.340

Review 9.  Light and Plant Growth Regulators on In Vitro Proliferation.

Authors:  Valeria Cavallaro; Alessandra Pellegrino; Rosario Muleo; Ivano Forgione
Journal:  Plants (Basel)       Date:  2022-03-22

10.  Chromatin in 3D: progress and prospects for plants.

Authors:  Chang Liu; Detlef Weigel
Journal:  Genome Biol       Date:  2015-08-21       Impact factor: 13.583

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