Literature DB >> 24516179

Aqueous solutions: state of the art in ab initio molecular dynamics.

Ali A Hassanali1, Jérôme Cuny, Vincenzo Verdolino, Michele Parrinello.   

Abstract

The simulation of liquids by ab initio molecular dynamics (AIMD) has been a subject of intense activity over the last two decades. The significant increase in computational resources as well as the development of new and efficient algorithms has elevated this method to the status of a standard quantum mechanical tool that is used by both experimentalists and theoreticians. As AIMD computes the electronic structure from first principles, it is free of ad hoc parametrizations and has thus been applied to a large variety of physical and chemical problems. In particular, AIMD has provided microscopic insight into the structural and dynamical properties of aqueous solutions which are often challenging to probe experimentally. In this review, after a brief theoretical description of the Born-Oppenheimer and Car-Parrinello molecular dynamics formalisms, we show how AIMD has enhanced our understanding of the properties of liquid water and its constituent ions: the proton and the hydroxide ion. Thereafter, a broad overview of the application of AIMD to other aqueous systems, such as solvated organic molecules and inorganic ions, is presented. We also briefly describe the latest theoretical developments made in AIMD, such as methods for enhanced sampling and the inclusion of nuclear quantum effects.

Entities:  

Keywords:  ab initio; aqueous systems; molecular dynamics

Year:  2014        PMID: 24516179     DOI: 10.1098/rsta.2012.0482

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  8 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-08       Impact factor: 11.205

2.  Classical Molecular Dynamics with Mobile Protons.

Authors:  Themis Lazaridis; Gerhard Hummer
Journal:  J Chem Inf Model       Date:  2017-11-14       Impact factor: 4.956

3.  Metadynamics combined with auxiliary density functional and density functional tight-binding methods: alanine dipeptide as a case study.

Authors:  Jerome Cuny; Kseniia Korchagina; Chemseddine Menakbi; Tzonka Mineva
Journal:  J Mol Model       Date:  2017-02-15       Impact factor: 1.810

Review 4.  Implicit Solvation Methods for Catalysis at Electrified Interfaces.

Authors:  Stefan Ringe; Nicolas G Hörmann; Harald Oberhofer; Karsten Reuter
Journal:  Chem Rev       Date:  2021-12-20       Impact factor: 72.087

5.  Understanding and Tracking the Excess Proton in Ab Initio Simulations; Insights from IR Spectra.

Authors:  Chenghan Li; Jessica M J Swanson
Journal:  J Phys Chem B       Date:  2020-06-24       Impact factor: 2.991

Review 6.  Water in Nanopores and Biological Channels: A Molecular Simulation Perspective.

Authors:  Charlotte I Lynch; Shanlin Rao; Mark S P Sansom
Journal:  Chem Rev       Date:  2020-08-25       Impact factor: 60.622

7.  Temperature Dependence of Rate Processes Beyond Arrhenius and Eyring: Activation and Transitivity.

Authors:  Valter H Carvalho-Silva; Nayara D Coutinho; Vincenzo Aquilanti
Journal:  Front Chem       Date:  2019-05-29       Impact factor: 5.221

8.  Nonmetallic Active Sites on Nickel Phosphide in Oxygen Evolution Reaction.

Authors:  Pengfei Zhang; Hongmei Qiu; Huicong Li; Jiangang He; Yingying Xu; Rongming Wang
Journal:  Nanomaterials (Basel)       Date:  2022-03-29       Impact factor: 5.076

  8 in total

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