Literature DB >> 24516165

Single-particle EM reveals the higher-order domain architecture of soluble guanylate cyclase.

Melody G Campbell1, Eric S Underbakke, Clinton S Potter, Bridget Carragher, Michael A Marletta.   

Abstract

Soluble guanylate cyclase (sGC) is the primary nitric oxide (NO) receptor in mammals and a central component of the NO-signaling pathway. The NO-signaling pathways mediate diverse physiological processes, including vasodilation, neurotransmission, and myocardial functions. sGC is a heterodimer assembled from two homologous subunits, each comprised of four domains. Although crystal structures of isolated domains have been reported, no structure is available for full-length sGC. We used single-particle electron microscopy to obtain the structure of the complete sGC heterodimer and determine its higher-order domain architecture. Overall, the protein is formed of two rigid modules: the catalytic dimer and the clustered Per/Art/Sim and heme-NO/O2-binding domains, connected by a parallel coiled coil at two hinge points. The quaternary assembly demonstrates a very high degree of flexibility. We captured hundreds of individual conformational snapshots of free sGC, NO-bound sGC, and guanosine-5'-[(α,β)-methylene]triphosphate-bound sGC. The molecular architecture and pronounced flexibility observed provides a significant step forward in understanding the mechanism of NO signaling.

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Year:  2014        PMID: 24516165      PMCID: PMC3939929          DOI: 10.1073/pnas.1400711111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

Review 1.  Guanylyl cyclases and signaling by cyclic GMP.

Authors:  K A Lucas; G M Pitari; S Kazerounian; I Ruiz-Stewart; J Park; S Schulz; K P Chepenik; S A Waldman
Journal:  Pharmacol Rev       Date:  2000-09       Impact factor: 25.468

2.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

3.  The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

Authors:  Konstantin Arnold; Lorenza Bordoli; Jürgen Kopp; Torsten Schwede
Journal:  Bioinformatics       Date:  2005-11-13       Impact factor: 6.937

4.  YC-1 binding to the β subunit of soluble guanylyl cyclase overcomes allosteric inhibition by the α subunit.

Authors:  Rahul Purohit; Bradley G Fritz; Juliana The; Aaron Issaian; Andrzej Weichsel; Cynthia L David; Eric Campbell; Andrew C Hausrath; Leida Rassouli-Taylor; Elsa D Garcin; Matthew J Gage; William R Montfort
Journal:  Biochemistry       Date:  2013-12-30       Impact factor: 3.162

5.  Structural basis of a phototropin light switch.

Authors:  Shannon M Harper; Lori C Neil; Kevin H Gardner
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Crystal structure of the Alpha subunit PAS domain from soluble guanylyl cyclase.

Authors:  Rahul Purohit; Andrzej Weichsel; William R Montfort
Journal:  Protein Sci       Date:  2013-09-07       Impact factor: 6.725

8.  Higher-order interactions bridge the nitric oxide receptor and catalytic domains of soluble guanylate cyclase.

Authors:  Eric S Underbakke; Anthony T Iavarone; Michael A Marletta
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-09       Impact factor: 11.205

Review 9.  Concepts of neural nitric oxide-mediated transmission.

Authors:  John Garthwaite
Journal:  Eur J Neurosci       Date:  2008-06       Impact factor: 3.386

10.  Negative Staining and Image Classification - Powerful Tools in Modern Electron Microscopy.

Authors:  Melanie Ohi; Ying Li; Yifan Cheng; Thomas Walz
Journal:  Biol Proced Online       Date:  2004-03-19       Impact factor: 3.244

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  24 in total

1.  Motion of proximal histidine and structural allosteric transition in soluble guanylate cyclase.

Authors:  Byung-Kuk Yoo; Isabelle Lamarre; Jean-Louis Martin; Fabrice Rappaport; Michel Negrerie
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-23       Impact factor: 11.205

2.  Distinct conformational spectrum of homologous multidrug ABC transporters.

Authors:  Arne Moeller; Sung Chang Lee; Houchao Tao; Jeffrey A Speir; Geoffrey Chang; Ina L Urbatsch; Clinton S Potter; Bridget Carragher; Qinghai Zhang
Journal:  Structure       Date:  2015-02-05       Impact factor: 5.006

3.  Instability in a coiled-coil signaling helix is conserved for signal transduction in soluble guanylyl cyclase.

Authors:  Andrzej Weichsel; Jessica A Kievenaar; Roslyn Curry; Jacob T Croft; William R Montfort
Journal:  Protein Sci       Date:  2019-08-27       Impact factor: 6.725

4.  Molecular architecture of mammalian nitric oxide synthases.

Authors:  Melody G Campbell; Brian C Smith; Clinton S Potter; Bridget Carragher; Michael A Marletta
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-14       Impact factor: 11.205

Review 5.  Redox regulation of soluble guanylyl cyclase.

Authors:  Rohan C Shah; Subramaniam Sanker; Katherine C Wood; Brittany G Durgin; Adam C Straub
Journal:  Nitric Oxide       Date:  2018-03-22       Impact factor: 4.427

6.  Heat Shock Protein 90 Associates with the Per-Arnt-Sim Domain of Heme-free Soluble Guanylate Cyclase: IMplications for Enzyme Maturation.

Authors:  Anindya Sarkar; Yue Dai; Mohammad Mahfuzul Haque; Franziska Seeger; Arnab Ghosh; Elsa D Garcin; William R Montfort; Stanley L Hazen; Saurav Misra; Dennis J Stuehr
Journal:  J Biol Chem       Date:  2015-07-01       Impact factor: 5.157

Review 7.  Structure and Activation of Soluble Guanylyl Cyclase, the Nitric Oxide Sensor.

Authors:  William R Montfort; Jessica A Wales; Andrzej Weichsel
Journal:  Antioxid Redox Signal       Date:  2016-04-26       Impact factor: 8.401

8.  Inhibition of soluble guanylyl cyclase by small molecules targeting the catalytic domain.

Authors:  Jagamya Vijayaraghavan; Kristopher Kramp; Michael E Harris; Focco van den Akker
Journal:  FEBS Lett       Date:  2016-10-04       Impact factor: 4.124

9.  Structural insights into the mechanism of human soluble guanylate cyclase.

Authors:  Yunlu Kang; Rui Liu; Jing-Xiang Wu; Lei Chen
Journal:  Nature       Date:  2019-09-12       Impact factor: 49.962

10.  Selective cysteines oxidation in soluble guanylyl cyclase catalytic domain is involved in NO activation.

Authors:  Maryam Alapa; Chuanlong Cui; Ping Shu; Hong Li; Vlad Kholodovych; Annie Beuve
Journal:  Free Radic Biol Med       Date:  2020-11-06       Impact factor: 7.376

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