Literature DB >> 24511924

Quantum mechanical study of solvent effects in a prototype SN2 reaction in solution: Cl- attack on CH3Cl.

Erich R Kuechler1, Darrin M York1.   

Abstract

The nucleophilic attack of a chloride ion on methyl chloride is an important prototype SN2 reaction in organic chemistry that is known to be sensitive to the effects of the surrounding solvent. Herein, we develop a highly accurate Specific Reaction Parameter (SRP) model based on the Austin Model 1 Hamiltonian for chlorine to study the effects of solvation into an aqueous environment on the reaction mechanism. To accomplish this task, we apply high-level quantum mechanical calculations to study the reaction in the gas phase and combined quantum mechanical/molecular mechanical simulations with TIP3P and TIP4P-ew water models and the resulting free energy profiles are compared with those determined from simulations using other fast semi-empirical quantum models. Both gas phase and solution results with the SRP model agree very well with experiment and provide insight into the specific role of solvent on the reaction coordinate. Overall, the newly parameterized SRP Hamiltonian is able to reproduce both the gas phase and solution phase barriers, suggesting it is an accurate and robust model for simulations in the aqueous phase at greatly reduced computational cost relative to comparably accurate ab initio and density functional models.

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Year:  2014        PMID: 24511924      PMCID: PMC3977776          DOI: 10.1063/1.4863344

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  29 in total

1.  Halocarbons produced by natural oxidation processes during degradation of organic matter.

Authors:  F Keppler; R Eiden; V Niedan; J Pracht; H F Schöler
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

2.  Challenges for density functional theory.

Authors:  Aron J Cohen; Paula Mori-Sánchez; Weitao Yang
Journal:  Chem Rev       Date:  2011-12-22       Impact factor: 60.622

3.  Perspective on density functional theory.

Authors:  Kieron Burke
Journal:  J Chem Phys       Date:  2012-04-21       Impact factor: 3.488

4.  Charge-dependent model for many-body polarization, exchange, and dispersion interactions in hybrid quantum mechanical/molecular mechanical calculations.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Chem Phys       Date:  2007-11-21       Impact factor: 3.488

5.  Statistically optimal analysis of samples from multiple equilibrium states.

Authors:  Michael R Shirts; John D Chodera
Journal:  J Chem Phys       Date:  2008-09-28       Impact factor: 3.488

6.  Simulations of Gas-Phase Chemical Reactions: Applications to SN2 Nucleophilic Substitution.

Authors:  W L Hase
Journal:  Science       Date:  1994-11-11       Impact factor: 47.728

7.  Reaction electronic flux: a new concept to get insights into reaction mechanisms. Study of model symmetric nucleophilic substitutions.

Authors:  Eleonora Echegaray; Alejandro Toro-Labbé
Journal:  J Phys Chem A       Date:  2008-10-23       Impact factor: 2.781

8.  Gas-phase ionic reactions: dynamics and mechanism of nucleophilic displacements

Authors: 
Journal:  Science       Date:  1998-03-20       Impact factor: 47.728

9.  Specific Reaction Parametrization of the AM1/d Hamiltonian for Phosphoryl Transfer Reactions:  H, O, and P Atoms.

Authors:  Kwangho Nam; Qiang Cui; Jiali Gao; Darrin M York
Journal:  J Chem Theory Comput       Date:  2007-03       Impact factor: 6.006

10.  Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations.

Authors:  In Suk Joung; Thomas E Cheatham
Journal:  J Phys Chem B       Date:  2008-07-02       Impact factor: 2.991

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  3 in total

1.  Charge-dependent many-body exchange and dispersion interactions in combined QM/MM simulations.

Authors:  Erich R Kuechler; Timothy J Giese; Darrin M York
Journal:  J Chem Phys       Date:  2015-12-21       Impact factor: 3.488

2.  VR-SCOSMO: A smooth conductor-like screening model with charge-dependent radii for modeling chemical reactions.

Authors:  Erich R Kuechler; Timothy J Giese; Darrin M York
Journal:  J Chem Phys       Date:  2016-04-28       Impact factor: 3.488

3.  Nucleophilic Substitution in Solution: Activation Strain Analysis of Weak and Strong Solvent Effects.

Authors:  Trevor A Hamlin; Bas van Beek; Lando P Wolters; F Matthias Bickelhaupt
Journal:  Chemistry       Date:  2018-03-24       Impact factor: 5.236

  3 in total

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