Literature DB >> 24508391

Kinase-mediated changes in nucleosome conformation trigger chromatin decondensation via poly(ADP-ribosyl)ation.

Colin J Thomas1, Elena Kotova1, Mark Andrake1, Jared Adolf-Bryfogle1, Robert Glaser2, Catherine Regnard3, Alexei V Tulin4.   

Abstract

Dynamically controlled posttranslational modifications of nucleosomal histones alter chromatin condensation to regulate transcriptional activation. We report that a nuclear tandem kinase, JIL-1, controls gene expression by activating poly(ADP-ribose) polymerase-1 (PARP-1). JIL-1 phosphorylates the C terminus of the H2Av histone variant, which stimulates PARP-1 enzymatic activity in the surrounding chromatin, leading to further modification of histones and chromatin loosening. The H2Av nucleosome has a higher surface representation of PARP-1 binding patch, consisting of H3 and H4 epitopes. Phosphorylation of H2Av by JIL-1 restructures this surface patch, leading to activation of PARP-1. Exposure of Val61 and Leu23 of the H4 histone is critical for PARP-1 binding on nucleosome and PARP-1 activation following H2Av phosphorylation. We propose that chromatin loosening and associated initiation of gene expression is activated by phosphorylation of H2Av in a nucleosome positioned in promoter regions of PARP-1-dependent genes.
Copyright © 2014 Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 24508391      PMCID: PMC3951681          DOI: 10.1016/j.molcel.2014.01.005

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  46 in total

1.  Preparation of nucleosome core particle from recombinant histones.

Authors:  K Luger; T J Rechsteiner; T J Richmond
Journal:  Methods Enzymol       Date:  1999       Impact factor: 1.600

2.  Increasing the precision of comparative models with YASARA NOVA--a self-parameterizing force field.

Authors:  Elmar Krieger; Günther Koraimann; Gert Vriend
Journal:  Proteins       Date:  2002-05-15

3.  Loss of poly(ADP-ribose) glycohydrolase causes progressive neurodegeneration in Drosophila melanogaster.

Authors:  Shuji Hanai; Masayuki Kanai; Sayaka Ohashi; Keiji Okamoto; Mitsunori Yamada; Hitoshi Takahashi; Masanao Miwa
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-15       Impact factor: 11.205

4.  Structural modeling of TAL effector-DNA interactions.

Authors:  Philip Bradley
Journal:  Protein Sci       Date:  2012-02-14       Impact factor: 6.725

5.  NAD+-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1.

Authors:  Mi Young Kim; Steven Mauro; Nicolas Gévry; John T Lis; W Lee Kraus
Journal:  Cell       Date:  2004-12-17       Impact factor: 41.582

6.  SCWRL and MolIDE: computer programs for side-chain conformation prediction and homology modeling.

Authors:  Qiang Wang; Adrian A Canutescu; Roland L Dunbrack
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

7.  PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta.

Authors:  Sidhartha Chaudhury; Sergey Lyskov; Jeffrey J Gray
Journal:  Bioinformatics       Date:  2010-01-07       Impact factor: 6.937

8.  A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions.

Authors:  Maxim V Shapovalov; Roland L Dunbrack
Journal:  Structure       Date:  2011-06-08       Impact factor: 5.006

9.  Drosophila aurora B kinase is required for histone H3 phosphorylation and condensin recruitment during chromosome condensation and to organize the central spindle during cytokinesis.

Authors:  R Giet; D M Glover
Journal:  J Cell Biol       Date:  2001-02-19       Impact factor: 10.539

10.  The Drosophila heterochromatic gene encoding poly(ADP-ribose) polymerase (PARP) is required to modulate chromatin structure during development.

Authors:  Alexei Tulin; Dianne Stewart; Allan C Spradling
Journal:  Genes Dev       Date:  2002-08-15       Impact factor: 11.361

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  21 in total

1.  H2Av facilitates H3S10 phosphorylation but is not required for heat shock-induced chromatin decondensation or transcriptional elongation.

Authors:  Yeran Li; Chao Wang; Weili Cai; Saheli Sengupta; Michael Zavortink; Huai Deng; Jack Girton; Jørgen Johansen; Kristen M Johansen
Journal:  Development       Date:  2017-08-14       Impact factor: 6.868

Review 2.  DNA topology and transcription.

Authors:  Fedor Kouzine; David Levens; Laura Baranello
Journal:  Nucleus       Date:  2014-04-22       Impact factor: 4.197

3.  Chromatin to Clinic: The Molecular Rationale for PARP1 Inhibitor Function.

Authors:  Felix Y Feng; Johann S de Bono; Mark A Rubin; Karen E Knudsen
Journal:  Mol Cell       Date:  2015-06-18       Impact factor: 17.970

4.  Non-NAD-like PARP1 inhibitor enhanced synthetic lethal effect of NAD-like PARP inhibitors against BRCA1-deficient leukemia.

Authors:  Margaret Nieborowska-Skorska; Silvia Maifrede; Min Ye; Monika Toma; Elizabeth Hewlett; John Gordon; Bac Viet Le; Tomasz Sliwinski; Huaqing Zhao; Katarzyna Piwocka; Peter Valent; Alexei V Tulin; Wayne Childers; Tomasz Skorski
Journal:  Leuk Lymphoma       Date:  2018-10-02

5.  Charon Mediates Immune Deficiency-Driven PARP-1-Dependent Immune Responses in Drosophila.

Authors:  Yingbiao Ji; Colin Thomas; Nikita Tulin; Niraj Lodhi; Ernest Boamah; Vladimir Kolenko; Alexei V Tulin
Journal:  J Immunol       Date:  2016-08-15       Impact factor: 5.422

6.  Mitotic bookmarking: maintaining post-mitotic reprogramming of transcription reactivation.

Authors:  Niraj Lodhi; Yingbiao Ji; Alexei Tulin
Journal:  Curr Mol Biol Rep       Date:  2016-02-05

7.  Poly(ADP-ribosyl)ation-dependent Transient Chromatin Decondensation and Histone Displacement following Laser Microirradiation.

Authors:  Hilmar Strickfaden; Darin McDonald; Michael J Kruhlak; Jean-Francois Haince; John P H Th'ng; Michele Rouleau; Toytaka Ishibashi; Gareth N Corry; Juan Ausio; D Alan Underhill; Guy G Poirier; Michael J Hendzel
Journal:  J Biol Chem       Date:  2015-11-11       Impact factor: 5.157

Review 8.  The expanding universe of PARP1-mediated molecular and therapeutic mechanisms.

Authors:  Dan Huang; W Lee Kraus
Journal:  Mol Cell       Date:  2022-03-09       Impact factor: 19.328

Review 9.  Emerging role of PARP-1 and PARthanatos in ischemic stroke.

Authors:  Shuiqiao Liu; Weibo Luo; Yingfei Wang
Journal:  J Neurochem       Date:  2021-07-28       Impact factor: 5.546

10.  Histone supply regulates S phase timing and cell cycle progression.

Authors:  Ufuk Günesdogan; Herbert Jäckle; Alf Herzig
Journal:  Elife       Date:  2014-09-09       Impact factor: 8.140

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