Literature DB >> 2450588

Macromolecular crowding extends the range of conditions under which DNA polymerase is functional.

S B Zimmerman1, S O Trach.   

Abstract

The nick-translation reaction of E. coli DNA polymerase I (Pol I) was used as a model system to demonstrate the ability of macromolecular crowding to alter the response of an enzyme to a number of basic parameters, such as pH, temperature or inhibitors. In the presence of high concentrations of non-specific polymers, nick translation occurred under a variety of otherwise strongly inhibitory conditions. The conditions tested included a range of pH values or temperatures or inhibitory concentrations of urea, formamide or ethidium bromide. These crowding effects are accentuated at higher ionic strengths, suggesting their origin in increased binding between the polymerase and its DNA template-primer under crowded conditions. Kinetic measurements were consistent with such a mechanism.

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Year:  1988        PMID: 2450588     DOI: 10.1016/0167-4781(88)90155-8

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  7 in total

Review 1.  Pre-PCR processing: strategies to generate PCR-compatible samples.

Authors:  Peter Rådström; Rickard Knutsson; Petra Wolffs; Maria Lövenklev; Charlotta Löfström
Journal:  Mol Biotechnol       Date:  2004-02       Impact factor: 2.695

2.  Macromolecular crowding and volume perception in dog red cells.

Authors:  J C Parker; G C Colclasure
Journal:  Mol Cell Biochem       Date:  1992-09-08       Impact factor: 3.396

3.  Effects of molecular crowding on the interaction between DNA and the Escherichia coli regulatory protein TyrR.

Authors:  J Poon; M Bailey; D J Winzor; B E Davidson; W H Sawyer
Journal:  Biophys J       Date:  1997-12       Impact factor: 4.033

4.  Dynamic Crowding Regulates Transcription.

Authors:  Anne R Shim; Rikkert J Nap; Kai Huang; Luay M Almassalha; Hiroaki Matusda; Vadim Backman; Igal Szleifer
Journal:  Biophys J       Date:  2019-11-15       Impact factor: 4.033

5.  Origin auxiliary sequences can facilitate initiation of simian virus 40 DNA replication in vitro as they do in vivo.

Authors:  Z S Guo; C Gutierrez; U Heine; J M Sogo; M L Depamphilis
Journal:  Mol Cell Biol       Date:  1989-09       Impact factor: 4.272

6.  Guiding protein aggregation with macromolecular crowding.

Authors:  Larissa A Munishkina; Atta Ahmad; Anthony L Fink; Vladimir N Uversky
Journal:  Biochemistry       Date:  2008-07-30       Impact factor: 3.162

Review 7.  What macromolecular crowding can do to a protein.

Authors:  Irina M Kuznetsova; Konstantin K Turoverov; Vladimir N Uversky
Journal:  Int J Mol Sci       Date:  2014-12-12       Impact factor: 5.923

  7 in total

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