Literature DB >> 24505797

Adaptively constrained convex optimization for accurate fiber orientation estimation with high order spherical harmonics.

Giang Tran1, Yonggang Shi2.   

Abstract

Diffusion imaging data from the Human Connectome Project (HCP) provides a great opportunity to map the whole brain white matter connectivity to unprecedented resolution in vivo. In this paper we develop a novel method for accurately reconstruct fiber orientation distribution from cutting-edge diffusion data by solving the spherical deconvolution problem as a constrained convex optimization problem. With a set of adaptively selected constraints, our method allows the use of high order spherical harmonics to reliably resolve crossing fibers with small separation angles. In our experiments, we demonstrate on simulated data that our algorithm outperforms a popular spherical deconvolution method in resolving fiber crossings. We also successfully applied our method to the multi-shell and diffusion spectrum imaging (DSI) data from HCP to demonstrate its ability in using state-of-the-art diffusion data to study complicated fiber structures.

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Mesh:

Year:  2013        PMID: 24505797      PMCID: PMC4041692          DOI: 10.1007/978-3-642-40760-4_61

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  10 in total

1.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity.

Authors:  David S Tuch; Timothy G Reese; Mette R Wiegell; Nikos Makris; John W Belliveau; Van J Wedeen
Journal:  Magn Reson Med       Date:  2002-10       Impact factor: 4.668

2.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; David G Gadian; Alan Connelly
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

3.  Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging.

Authors:  Van J Wedeen; Patric Hagmann; Wen-Yih Isaac Tseng; Timothy G Reese; Robert M Weisskoff
Journal:  Magn Reson Med       Date:  2005-12       Impact factor: 4.668

4.  Robust determination of the fibre orientation distribution in diffusion MRI: non-negativity constrained super-resolved spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; Alan Connelly
Journal:  Neuroimage       Date:  2007-02-21       Impact factor: 6.556

5.  A unified computational framework for deconvolution to reconstruct multiple fibers from diffusion weighted MRI.

Authors:  Bing Jian; Baba C Vemuri
Journal:  IEEE Trans Med Imaging       Date:  2007-11       Impact factor: 10.048

6.  Deterministic and probabilistic tractography based on complex fibre orientation distributions.

Authors:  Maxime Descoteaux; Rachid Deriche; Thomas R Knösche; Alfred Anwander
Journal:  IEEE Trans Med Imaging       Date:  2009-02       Impact factor: 10.048

7.  Mapping the human connectome.

Authors:  Arthur W Toga; Kristi A Clark; Paul M Thompson; David W Shattuck; John Darrell Van Horn
Journal:  Neurosurgery       Date:  2012-07       Impact factor: 4.654

8.  MR diffusion tensor spectroscopy and imaging.

Authors:  P J Basser; J Mattiello; D LeBihan
Journal:  Biophys J       Date:  1994-01       Impact factor: 4.033

Review 9.  The Human Connectome Project: a data acquisition perspective.

Authors:  D C Van Essen; K Ugurbil; E Auerbach; D Barch; T E J Behrens; R Bucholz; A Chang; L Chen; M Corbetta; S W Curtiss; S Della Penna; D Feinberg; M F Glasser; N Harel; A C Heath; L Larson-Prior; D Marcus; G Michalareas; S Moeller; R Oostenveld; S E Petersen; F Prior; B L Schlaggar; S M Smith; A Z Snyder; J Xu; E Yacoub
Journal:  Neuroimage       Date:  2012-02-17       Impact factor: 6.556

10.  Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?

Authors:  T E J Behrens; H Johansen Berg; S Jbabdi; M F S Rushworth; M W Woolrich
Journal:  Neuroimage       Date:  2006-10-27       Impact factor: 6.556

  10 in total
  5 in total

1.  Fiber Orientation and Compartment Parameter Estimation From Multi-Shell Diffusion Imaging.

Authors:  Giang Tran; Yonggang Shi
Journal:  IEEE Trans Med Imaging       Date:  2015-05-07       Impact factor: 10.048

2.  ROTATIONAL GRADIENT FIELD FOR INTERPOLATION OF FIBER ORIENTATION DISTRIBUTION IN CONNECTIVITY ANALYSIS.

Authors:  Junning Li; Yonggang Shi; Arthur W Toga
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2014

3.  Diffusion of fiber orientation distribution functions with a rotation-induced riemannian metric.

Authors:  Junning Li; Yonggang Shi; Arthur W Toga
Journal:  Med Image Comput Comput Assist Interv       Date:  2014

4.  Connectome imaging for mapping human brain pathways.

Authors:  Y Shi; A W Toga
Journal:  Mol Psychiatry       Date:  2017-05-02       Impact factor: 15.992

5.  A Novel Richardson-Lucy Model with Dictionary Basis and Spatial Regularization for Isolating Isotropic Signals.

Authors:  Tiantian Xu; Yuanjing Feng; Ye Wu; Qingrun Zeng; Jun Zhang; Jianzhong He; Qichuan Zhuge
Journal:  PLoS One       Date:  2017-01-12       Impact factor: 3.240

  5 in total

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