Literature DB >> 24503142

The role of microhomology in genomic structural variation.

Diego Ottaviani1, Magdalena LeCain1, Denise Sheer2.   

Abstract

Genomic structural variation, which can be defined as differences in the copy number, orientation, or location of relatively large DNA segments, is not only crucial in evolution, but also gives rise to genomic disorders. Whereas the major mechanisms that generate structural variation have been well characterised, insights into additional mechanisms are emerging from the identification of short regions of DNA sequence homology, also known as microhomology, at chromosomal breakpoints. In addition, functional studies are elucidating the characteristics of microhomology-mediated pathways, which are mutagenic. Here, we describe the features and mechanistic models of microhomology-mediated events, discuss their physiological and pathological significance, and highlight recent advances in this rapidly evolving field of research.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  double-strand breaks; genomic disorders; microhomology; microhomology-mediated break-induced replication; microhomology-mediated end joining; structural variation

Mesh:

Year:  2014        PMID: 24503142     DOI: 10.1016/j.tig.2014.01.001

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  61 in total

1.  Complex DNA structures trigger copy number variation across the Plasmodium falciparum genome.

Authors:  Adam C Huckaby; Claire S Granum; Maureen A Carey; Karol Szlachta; Basel Al-Barghouthi; Yuh-Hwa Wang; Jennifer L Guler
Journal:  Nucleic Acids Res       Date:  2019-02-28       Impact factor: 16.971

2.  The Alu-rich genomic architecture of SPAST predisposes to diverse and functionally distinct disease-associated CNV alleles.

Authors:  Philip M Boone; Bo Yuan; Ian M Campbell; Jennifer C Scull; Marjorie A Withers; Brett C Baggett; Christine R Beck; Christine J Shaw; Pawel Stankiewicz; Paolo Moretti; Wendy E Goodwin; Nichole Hein; John K Fink; Moon-Woo Seong; Soo Hyun Seo; Sung Sup Park; Izabela D Karbassi; Sat Dev Batish; Andrés Ordóñez-Ugalde; Beatriz Quintáns; María-Jesús Sobrido; Susanne Stemmler; James R Lupski
Journal:  Am J Hum Genet       Date:  2014-07-24       Impact factor: 11.025

3.  Alternative outcomes of pathogenic complex somatic structural variations in the genomes of NF1 and NF2 patients.

Authors:  Meng-Chang Hsiao; Arkadiusz Piotrowski; Andrzej Brunon Poplawski; Tom Callens; Chuanhua Fu; Ludwine Messiaen
Journal:  Neurogenetics       Date:  2017-03-11       Impact factor: 2.660

Review 4.  Mechanisms underlying structural variant formation in genomic disorders.

Authors:  Claudia M B Carvalho; James R Lupski
Journal:  Nat Rev Genet       Date:  2016-02-29       Impact factor: 53.242

5.  Xq22 deletions and correlation with distinct neurological disease traits in females: Further evidence for a contiguous gene syndrome.

Authors:  Hadia Hijazi; Fernanda S Coelho; Claudia Gonzaga-Jauregui; Laura Bernardini; Soe S Mar; Melanie A Manning; Andrea Hanson-Kahn; SakkuBai Naidu; Siddharth Srivastava; Jennifer A Lee; Julie R Jones; Michael J Friez; Thomas Alberico; Barbara Torres; Ping Fang; Sau Wai Cheung; Xiaofei Song; Angelique Davis-Williams; Carly Jornlin; Patricia A Wight; Pankaj Patyal; Jennifer Taube; Andrea Poretti; Ken Inoue; Feng Zhang; Davut Pehlivan; Claudia M B Carvalho; Grace M Hobson; James R Lupski
Journal:  Hum Mutat       Date:  2019-11-14       Impact factor: 4.878

Review 6.  Microhomology-mediated end joining: Good, bad and ugly.

Authors:  Ja-Hwan Seol; Eun Yong Shim; Sang Eun Lee
Journal:  Mutat Res       Date:  2017-07-16       Impact factor: 2.433

7.  Chronic p53-independent p21 expression causes genomic instability by deregulating replication licensing.

Authors:  Panagiotis Galanos; Konstantinos Vougas; David Walter; Alexander Polyzos; Apolinar Maya-Mendoza; Emma J Haagensen; Antonis Kokkalis; Fani-Marlen Roumelioti; Sarantis Gagos; Maria Tzetis; Begoña Canovas; Ana Igea; Akshay K Ahuja; Ralph Zellweger; Sofia Havaki; Emanuel Kanavakis; Dimitris Kletsas; Igor B Roninson; Spiros D Garbis; Massimo Lopes; Angel Nebreda; Dimitris Thanos; J Julian Blow; Paul Townsend; Claus Storgaard Sørensen; Jiri Bartek; Vassilis G Gorgoulis
Journal:  Nat Cell Biol       Date:  2016-06-20       Impact factor: 28.824

8.  A novel large fragment deletion in PLS3 causes rare X-linked early-onset osteoporosis and response to zoledronic acid.

Authors:  F Lv; M Ma; W Liu; X Xu; Y Song; L Li; Y Jiang; O Wang; W Xia; X Xing; Z Qiu; M Li
Journal:  Osteoporos Int       Date:  2017-06-16       Impact factor: 4.507

9.  Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes.

Authors:  Yi Kan Wang; Ali Bashashati; Michael S Anglesio; Dawn R Cochrane; Diljot S Grewal; Gavin Ha; Andrew McPherson; Hugo M Horlings; Janine Senz; Leah M Prentice; Anthony N Karnezis; Daniel Lai; Mohamed R Aniba; Allen W Zhang; Karey Shumansky; Celia Siu; Adrian Wan; Melissa K McConechy; Hector Li-Chang; Alicia Tone; Diane Provencher; Manon de Ladurantaye; Hubert Fleury; Aikou Okamoto; Satoshi Yanagida; Nozomu Yanaihara; Misato Saito; Andrew J Mungall; Richard Moore; Marco A Marra; C Blake Gilks; Anne-Marie Mes-Masson; Jessica N McAlpine; Samuel Aparicio; David G Huntsman; Sohrab P Shah
Journal:  Nat Genet       Date:  2017-04-24       Impact factor: 38.330

10.  Local sequence assembly reveals a high-resolution profile of somatic structural variations in 97 cancer genomes.

Authors:  Jiali Zhuang; Zhiping Weng
Journal:  Nucleic Acids Res       Date:  2015-08-17       Impact factor: 16.971

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