| Literature DB >> 24499171 |
Ana Carolina Zimiani de Paiva, Fernando Augusto de Lima Marson1, José Dirceu Ribeiro, Carmen Sílvia Bertuzzo.
Abstract
BACKGROUND: Asthma is caused by both environmental and genetic factors. The ADRB2 gene, which encodes the beta 2-adrenergic receptor, is one of the most extensively studied genes with respect to asthma prevalence and severity. The Arg16Gly (+46A > G) and Gln27Glu (+79C > G) polymorphisms in the ADRB2 gene cause changes in the amino acids flanking the receptor ligand site, altering the response to bronchodilators and the risk of asthma through complex pathways. The ADRB2 polymorphisms affect beta-adrenergic bronchodilator action and are a tool to identify at-risk populations.Entities:
Year: 2014 PMID: 24499171 PMCID: PMC3930554 DOI: 10.1186/1710-1492-10-8
Source DB: PubMed Journal: Allergy Asthma Clin Immunol ISSN: 1710-1484 Impact factor: 3.406
Association of polymorphisms [Arg16Gly (c.46A > G) and Gln27Glu (c.79C > G)] with asthma risk
| Homozygous Arg16 | 28 | 9 | |||
| Heterozygous | 38 | 59 | 1.056 | 0.61-1.81 | |
| Homozygous Gly16 | 22 | 73 | |||
| | | | |||
| Homozygous Gln27 | 41 | 41 | |||
| Heterozygous | 36 | 11 | |||
| Homozygous Glu27 | 11 | 89 | |||
ADR2 = alpha2-adrenergic receptor; Arg = arginine; Gly = Glycine; Gln = Glutamine; Glu = Glutamic acid; A = Adenine; G = Guanine; T = Thymine; OR = Odds Ratio; CI = Confidence Interval.
Hardy-Weinberg equilibrium was calculated using the OEGE tool (http://www.oege.org/software/hardy-weinberg.html), being: (1 - patient) χ2 = 1.54, p-value > 0.05; (2 - control) χ2 = 0.48, p-value > 0.05; (3 - patient) χ2 = 0.41, p-value > 0.05; (4 - control) χ2 = 95.62, p-value < 0.001.
The OR was calculated using the Open-Epi tool (http://www.openepi.com). The OR and 95% CI values were obtained using the Mild-P test. For all data analyzed, α = 0.05 was used. The significant p-values are in bold.
Association of polymorphism [Arg16Gly (c.46A > G) and Gln27Glu (c.79C > G)] combinations with asthma risk
| Gly16 – Gln27 | 1 | 19 | 23 | 1.411 | 0.71-2.79 |
| Arg16 – Glu27 | 1 | 10 | 0 | - | - |
| Arg16 – Gln27 | 0 | 14 | 5 | ||
| Gly16 – Glu27 | 2 | 17 | 11 | ||
| Het16 – Gln27 | 0 | 10 | 12 | 1.376 | 0.55-3.38 |
| Het16 – Glu27 | 1 | 9 | 0 | - | - |
| Het16 – Het27 | 0 | 3 | 60 | ||
| Arg16 – Het27 | 0 | 4 | 4 | 1.627 | 0.36-7.39 |
| Gly16 – Het27 | 1 | 2 | 26 |
ADRB2 = alpha2-adrenergic receptor; Arg = arginine; Gly = Glycine; Gln = Glutamine; Glu = Glutamic acid; A = Adenine; G = Guanine; T = Thymine; Het = heterozygotes; OR = Odds Ratio; CI = Confidence Interval.
*The groups were created by counting each homozygous guanine allele at the Arg16Gly (c.46A > G) and Gln27Glu (c.79C > G) polymorphisms: (0) Arg16Arg + Gln27Gln genotype combination; (1) Gly16Gly or Glu27Glu genotype presence; (2) Gly16Gly + Glu27Glu genotype combination.
The OR was calculated using the Open-Epi tool (http://www.openepi.com). The OR and 95% CI values were obtained using the Mild-P test. For all data analyzed, α = 0.05 was used. The significant p-values are in bold.
Association of polymorphisms [Arg16Gly (c.46A > G) and Gln27Glu (c.79C > G)] with asthma risk based on the presence of Guanine alleles
| 0 | 31 | 81 | ||
| 1 | 40 | 49 | 1.562 | 0.90-2.70 |
| 2 | 17 | 11 |
ADRB2 = alpha2-adrenergic receptor; Arg = arginine; Gly = Glycine; Gln = Glutamine; Glu = Glutamic acid; A = Adenine; G = Guanine; T = Thymine; OR = Odds Ratio; CI = Confidence Interval.
*The groups were created by counting each homozygous guanine allele at the Arg16Gly (c.46A > G) and Gln27Glu (c.79C > G) polymorphisms: (0) Arg16Arg + Gln27Gln genotype combination; (1) Gly16Gly or Glu27Glu genotype presence; (2) Gly16Gly + Glu27Glu genotype combination.
The OR was calculated using the Open-Epi tool (http://www.openepi.com). The OR and 95% CI values were obtained using the Mild-P test. For all data analyzed, α = 0.05 was used. The significant p-values are in bold.
Association of asthma severity with polymorphisms [Arg16Gly (c.46A > G) and Gln27Glu (c.79C > G)]
| 14 (37.8%) | 1.258 (0.508 - 3.114) | 3 (8.1%) | 20 (54.1%) | 1.672 (0.698 - 4.003) | 37 (100%) | 4.674 | 0.322 | ||
| 7(33.3%) | 0.909 (0.319 - 2.587) | 5 (23.8%) | 1.625 (0.484 - 5.454) | 9 (42.9%) | 0.703 (0.259 - 1.906) | 21 (100%) | |||
| 8 (32%) | 0.829 (0.306 - 2.246) | 7 (28%) | 2.431 (0.771 - 7.665) | 10 (40%) | 0.667 (0.258 - 1.726) | 25 (100%) | |||
| | | | |||||||
| 25 (67.6%) | 3 (8.1%) | 9 (24.3%) | 1.023 (0.372 - 2.812) | 37 (100%) | 8.285 | 0.082 | |||
| 10 (47.6%) | 0.701 (0.26 - 1.892) | 6 (28.6%) | 1.667 (0.534 - 5.197) | 5 (23.8%) | 0.979 (0.307 - 3.124) | 21 (100%) | |||
| 10 (40%) | 0.438 (0.168 - 1.141) | 9 (36%) | 6 (24%) | 0.9925 (0.331 - 2.973) | 25 (100%) | ||||
| | | | |||||||
| | | ||||||||
| 12 (32.4%) | 0.571 (0.232 - 1.406) | 21 (56.8%) | 1.706 (0.712 - 4.086) | 4 (10.8%) | 0.994 (0.247 - 4) | 37 (100%) | 1.908 | 0.753 | |
| 9 (42.9%) | 1.188 (0.435 - 3.241) | 10 (47.6%) | 0.909 (0.338 - 2.448) | 2 (9.5%) | 0.827 (0.158 - 4.331) | 21 (100%) | |||
| 12 (48%) | 1.626 (0.629 - 4.205) | 10 (40%) | 0.581 (0.224 - 1.504) | 3 (12%) | 1.182 (0.271 - 5.154) | 25 (100%) | |||
ADRB2 = alpha2-adrenergic receptor; Arg = arginine; Gly = Glycine; Gln = Glutamine; Glu = Glutamic acid; A = Adenine; G = Guanine; T = Thymine; OR = Odds Ratio; CI = Confidence Interval.
*The groups were created by counting each homozygous guanine allele at the Arg16Gly (c.46A > G) and Gln27Glu (c.79C > G) polymorphisms: (0) Arg16Arg + Gln27Gln genotype combination; (1) Gly16Gly or Glu27Glu genotype presence; (2) Gly16Gly + Glu27Glu genotype combination.
The OR was calculated using the Open-Epi tool (http://www.openepi.com). The OR and 95% CI values were obtained using the Mild-P test and in the table the χ2 value is shown. For all data analyzed, α = 0.05 was used. The significant p-values are in bold.
Figure 1Complete association of the polymorphisms [Arg16Gly (c.46A > G) and Gln27Glu (c.79C > G)] with asthma risk. (A) Gene, mRNA and protein representation; (B) polymorphism analyses (green); (C) haplotype analyzed (purple); (D) haplotype groups analyzed (red).
Figure 2Multifactor dimensionality reduction test for the Arg16Gly and Gln27Glu polymorphisms in the ADRB2 gene in Asthma patients. A. Distribution of patients according to different genotype combinations for the clustering of Arg16Gly and Gln27Glu polymorphisms in the ADRB2 gene. Combinations of high risk are in gray and low risk are in white. The number in the figure represents the patients with a given genotype combination. For example, in the first square, 14 asthma patients (left column) and five healthy patients (right column) have the following genotype: AA for the Arg16Gly polymorphism and CC for the Gln27Glu polymorphism. In this case, the first column in each square represents the asthma patient group, and the second column represents healthy subjects. B. Dendrogram of the polymorphism interactions with respect to asthma presence. The same color in this case indicates linkage between the analyzed polymorphisms. C. Graph of entropy measuring the power of different polymorphisms and the interactions between them for the gene analyzed to explain the polymorphism-polymorphism association with asthma occurrence. The association is represented by 9.87% for the Arg16Gly polymorphism and 24.36% for the Gln27Glu polymorphism. The interaction between the polymorphisms accounts for -9.28% of the association. The protective genotypes in our samples are CG (for the Gln27Glu polymorphism) and AG or GG (for the Arg16Gly polymorphism).