| Literature DB >> 24498576 |
Maritza Fernández Culma1, Jaime Andrés Pereañez2, Vitelbina Núñez Rangel3, Bruno Lomonte4.
Abstract
Bothrops punctatus is an endangered, semi-arboreal pitviper species distributed in Panamá, Colombia, and Ecuador, whose venom is poorly characterized. In the present work, the protein composition of this venom was profiled using the 'snake venomics' analytical strategy. Decomplexation of the crude venom by RP-HPLC and SDS-PAGE, followed by tandem mass spectrometry of tryptic digests, showed that it consists of proteins assigned to at least nine snake toxin families. Metalloproteinases are predominant in this secretion (41.5% of the total proteins), followed by C-type lectin/lectin-like proteins (16.7%), bradykinin-potentiating peptides (10.7%), phospholipases A2 (93%), serine proteinases (5.4%), disintegrins (38%), L-amino acid oxidases (3.1%), vascular endothelial growth factors (17%), and cysteine-rich secretory proteins (1.2%). Altogether, 6.6% of the proteins were not identified. In vitro, the venom exhibited proteolytic, phospholipase A2, and L-amino acid oxidase activities, as well as angiotensin-converting enzyme (ACE)-inhibitory activity, in agreement with the obtained proteomic profile. Cytotoxic activity on murine C2C12 myoblasts was negative, suggesting that the majority of venom phospholipases A2 likely belong to the acidic type, which often lack major toxic effects. The protein composition of B. punctatus venom shows a good correlation with toxic activities here and previously reported, and adds further data in support of the wide diversity of strategies that have evolved in snake venoms to subdue prey, as increasingly being revealed by proteomic analyses.Entities:
Keywords: Bothrops punctatus; Proteomics; Snake venom; Viperidae
Year: 2014 PMID: 24498576 PMCID: PMC3912449 DOI: 10.7717/peerj.246
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Figure 1Separation of Bothrops punctatus (A) venom proteins by RP-HPLC (C) and SDS-PAGE (B).
Venom was fractionated on a C18 column (C) by applying an acetonitrile gradient from 0 to 70% (dashed line), as described in Methods. Each fraction was analyzed by SDS-PAGE (B) under non-reducing (top gels) or reducing (bottom gels) conditions. Molecular weight markers (M) are indicated in kDa, at the left. Tryptic digests of the excised protein bands were characterized by MALDI-TOF/TOF, as summarized in Table 1. The photograph of B. punctatus was obtained with permission from www.tropicalherping.com.
Assignment of the RP-HPLC isolated fractions of Bothrops punctatus venom to protein families by MALDI-TOF-TOF of selected peptide ions from in-gel trypsin-digested protein bands.
| Peak | % | Mass (kDa) | Peptide ion | MS/MS-derived amino acid sequence | Protein family; ∼ related protein | |
|---|---|---|---|---|---|---|
| m/z | z | |||||
| 1 | 0.2 | - | - | - | unknown | |
| 2 | 0.3 | - | - | - | unknown | |
| 3 | 1.6 | - | - | - | unknown | |
| 4 | 10.7 | - | 967.5 | 1 | ZBWAPVBK | BPP-like; ∼ Q7T1M3 |
| 5 | 0.8 | ▼ 10 | 2259.1 | 1 | XARGDDM | Disintegrin; ∼ Q7SZD9 |
| 2051.0 | 1 | XRPGABCAEGXCCDBCR | ||||
| 2459.0 | 1 | EAGEECDCGTPGNPCCDAATCK | ||||
| 6 | 3.0 | ▼ 10 | 1902.9 | 1 | GDDMDDYCNGXSAGCPR | Disintegrin; ∼ Q0NZX5 |
| 2243.1 | 1 | XARGDDMDDYCNGXSAGCPR | ||||
| 2051.0 | 1 | XRPGABCAEGXCCDBCR | ||||
| 2459.1 | 1 | EAGEECDCGTPGNPCCDAATCK | ||||
| 7 | 0.3 | - | - | - | unknown | |
| 8 | 1.7 | ▼ 11 | 2062.0 | 1 | CGGCCTDESXECTATGBR | VEGF; ∼ Q90X23 |
| 3134.9 | 1 | ETXVSXXEEHPDEVSHXFRPSCVTAXR | ||||
| 9 | 1.2 | ▼ 22 ■ 18 | 2526.1 | 1 | SGPPCGDCPSACDNGXCTNPCTK | CRISP; ∼ Q7ZT99 |
| 1537.8 | 1 | MEWYPEAAANAER | ||||
| 1828.9 | 1 | YFYVCBYCPAGNMR | ||||
| 10a | 0.4 | ▼ 38 | 1561.9 | 1 | SVPNDDEEXRYPK | Serine proteinase; ∼ Q5W960 |
| 10b | 0.2 | ▼ 29 ■ 28 | 1206.8 | 1 | XMGWGTXSPTK | Serine proteinase; ∼ Q072L6 |
| 1683.2 | 1 | TYTBWDBDXMXXR | ||||
| 2534.5 | 1 | VSYPDVPHCANXNXXDYEVCR | ||||
| 1069.8 | 1 | FXVAXYTSR | ||||
| 1512.8 | 1 | VXGGDECNXNEHR | ||||
| 3387.8 | 1 | DSCBGDSGGPXXCNGBFBGXXSWGVHPCGBR | ||||
| 10c | 0.3 | ▼ 12 ■ 22 | - | - | - | unknown |
| 11 | 1.5 | ▼ 28 ■ 20 | 1288.7 | 1 | NFBMBXGVHSK | Serine proteinase; ∼ Q072L6 |
| 1190.7 | 1 | XMGWGTXSPTK | ||||
| 2305.4 | 1 | AAYPWBPVSSTTXCAGXXBGGK | ||||
| 1140.6 | 1 | VSDYTEWXK | ||||
| 2477.5 | 1 | VSNSEHXAPXSXPSSPPSVGSVCR | ||||
| 2477.4 | 1 | VXGGDECNXNEHR | ||||
| 12a | 1.8 | ▼ 35 | 1083.7 | 1 | FXAFXYPGR | Serine proteinase; ∼ Q6IWF1 |
| 12b | 0.4 | ▼ 29 ■ 22 | 1517.9 | 1 | NDDAXDBDXMXVR | Serine proteinase; ∼ Q5W959 |
| 1499.8 | 1 | VVGGDECNXNEHR | ||||
| 2294.3 | 1 | TNPDVPHCANXNXXDDAVCR | ||||
| 1279.7 | 1 | AAYPEXPAEYR | ||||
| 2889.7 | 1 | XDSPVSNSEHXAPXSXPSSPPSVGSVCR | ||||
| 1083.7 | 1 | FXAFXYPGR | ||||
| 13-15 | 0.8 | - | - | - | unknown | |
| 16 | 3.1 | ▼ 16 ■ 16 | 1505.7 | 1 | CCFVHDCCYGK | Phospholipase A2, D49; ∼ P86389 |
| 934.6 | 1 | YWFYGAK | ||||
| 1966.1 | 1 | YXSYGCYCGWGGXGBPK | ||||
| 2064.1 | 1 | DATDRCCFVHDCCYGK | ||||
| 2027.2 | 1 | DNBDTYDXBYWFYGAK | ||||
| 2626.4 | 1 | XDXYTYSBETGDXVCGGDDPCBK | ||||
| 1786.0 | 1 | BXCECDRVAATCFR | ||||
| 17a | 0.4 | ▼ 14 ■ 21 | 1928.9 | 1 | DCPPDWSSYEGHCYR | C-type lectin/lectin-like; ∼ P22030 |
| 17b | 1.7 | ▼ 15 ■ 16 | 2027.1 | 1 | DNBDTYDXBYWFYGAK | Phospholipase A2, D49; ∼ C9DPL5 |
| 17c | 0.4 | ■ 13 | 1720.8 | 1 | E | Phospholipase A2, D49; ∼ P86389 |
| 1505.7 | 1 | CCFVHDCCYGK | ||||
| 2064.0 | 1 | DATDRCCFVHDCCYGK | ||||
| 18 | 2.8 | ▼ 13 | 2064.0 | 1 | DATDRCCFVHDCCYGK | Phospholipase A2, D49; ∼ Q9I968 |
| 19 | 0.3 | - | - | - | unknown | |
| 20 | 6.2 | ▼ 13 ■ 19 | 1928.9 | 1 | DCPSDWSPYEGHCYR | C-type lectin/lectin-like; ∼ Q9PS06 |
| 21 | 0.8 | - | - | - | unknown | |
| 22a | 0.9 | ■ 120 | 1537.8 | 1 | ACSNGBCVDVNRAS | Metalloproteinase; ∼ Q8AWI5 |
| 1269.7 | 1 | SAECTDRFBR | ||||
| 22b | 3.1 | ▼ 53 ■ 48 | 3185.9 | 1 | VVXVGAGMSGXSAAYVXANAGHBVTVXEASER | L-amino acid oxidase; ∼ Q6TGQ9 |
| 2605.5 | 1 | BFGXBXNEFSBENENAWYFXK | ||||
| 2271.3 | 1 | XYFAGEYTABAHGWXDSTXK | ||||
| 1388.8 | 1 | BFWEDDGXHGGK | ||||
| 1352.8 | 1 | SAGBXYEESXBK | ||||
| 22c | 0.9 | ▼ 13 | 1636.0 | 1 | NXBSSDXYAWXGXR | C-type lectin/lectin-like; ∼ P22029 |
| 1928.9 | 1 | DCPPDWSSYEGHCYR | ||||
| 23-25a | 1.3 | ▼ 13 | 1533.7 | 1 | SYGAYGCNCGVXGR | Phospholipase A2, K49; ∼ Q9PVE3 |
| 23-25b | 1.1 | ▼ 28, ■ 20 | 1279.7 | 1 | AAYPEXPAEYR | Serine proteinase; ∼ Q5W959 |
| 14.997 | 1 | VVGGDECNXNEHR | ||||
| 2294.1 | 1 | TNPDVPHCANXNXXDDAVCR | ||||
| 23-25c | 0.9 | ▼ 13, ■ 19 | 1635.8 | 1 | NXBSSDXYAWXGXR | C-type lectin/lectin-like; ∼ P22029 |
| 26 | 14.4 | ▼ 23 ■ 42 | 2040.2 | 1 | YXYXDXXXTGVEXWSNK | Metalloproteinase; ∼ P86976 |
| 1114.6 | 1 | XHBMVNXMK | ||||
| 2257.3 | 1 | DXXNVBPAAPBTXDSFGEWR | ||||
| 1828.0 | 1 | YVEXFXVVDHGMFMK | ||||
| 27 | 2.0 | - | - | - | unknown | |
| 28a | 18.3 | ▼ 46 ■ 42 | 1552.7 | 1 | VCSNGHCVDVATAY | Metalloproteinase; ∼ Q8QG88 |
| 2953.3 | 1 | ASM | ||||
| 2154.2 | 1 | XTVBPDVDYTXNSFAEWR | ||||
| 28b | 2.1 | ■ 21 | 3261.7 | 1 | TDXVSPPVCGNYFVEVGEDCDCGSPATCR | Metalloproteinase; ∼ O93517 |
| 1457.0 | 1 | XVXVADYXM | ||||
| 28c | 6.2 | ▼ 14 | 1635.9 | 1 | NXBSSDXYAWXGXR | C-type lectin-like; ∼ P22029 |
| 1193.6 | 1 | TTDNBWWSR | ||||
| 29a | 3.2 | ▼ 46 | 2154.2 | 1 | XTVBPDVDYTXNSFAEWR | Metalloproteinase; ∼ Q8QG88 |
| 1609.9 | 1 | XYEXVNTXNVXYR | ||||
| 1775.0 | 1 | YVEFFXVVDBGMVTK | ||||
| 29b | 2.1 | ▼ 14 | 992.5 | 1 | MNWADAER | C-type lectin/lectin-like; ∼ M1V359 |
| 1928.8 | 1 | DCPPDWSSYEGHCYR | ||||
| 1842.9 | 1 | MNWADAERFCSEQAK | ||||
| 30 | 2.6 | ▼ 38 | 1327.8 | 1 | YXEXVXVADHR | Metalloproteinase; ∼ Q8AWX7 |
Cysteine residues determined in MS/MS analyses are carbamidomethylated. X: Leu/Ile; B: Lys/Gln; : oxidized; : propionamide; ▼: reduced, or ■: non-reduced SDS-PAGE mass estimations, in kDa. Abbreviations for protein families as in Fig. 2.
Figure 2Composition of Bothrops punctatus venom according to protein families, expressed as percentages of the total protein content.
SP: serine proteinase; PLA2: phospholipase A2; CRISP: cysteine-rich secretory protein; DIS: disintegrin; PEP: bradykininpotentiating peptide-like (BPP-like); LAO: L-amino acid oxidases; SVMP: metalloproteinase; VEGF: vascular endothelium growth factor; CTL: C-type lectin/lectin-like; UNK: unknown/unidentified.
Comparison of the venom composition of Bothrops punctatus with venoms from pitviper species distributed in Colombia*
| Protein family | Snake species | ||||
|---|---|---|---|---|---|
| 2-6 |
|
|
|
|
|
| Metalloproteinase | 41.5 | 48.5 | 44.0 | 17.7 | 53.7 |
| Phospholipase A2 | 9.3 | 24.0 | 45.1 | 43.8 | 0.7 |
| Serine proteinase | 5.4 | 10.9 | 10.9 | 5.8 | 9.3 |
| BPP-like | 10.7 | 0.3 | - | 13.4 | 8.3 |
| CRISP | 1.2 | 2.6 | 0.1 | 2.1 | 1.1 |
| C-type lectin/lectin-like | 16.7 | 7.1 | 0.5 | - | 10.1 |
| VEGF | 1.7 | - | - | - | - |
| L-amino acid oxidase | 3.1 | 4.7 | 4.6 | 8.9 | 3.3 |
| Disintegrin | 3.8 | 1.7 | 1.4 | - | 2.3 |
| Kazal type inhibitor | - | - | - | 8.3 | - |
| Phosphodiesterase | - | - | - | - | 0.7 |
| Nerve growth factor | - | - | - | - | 0.1 |
| unknown | 6.6 | - | - | - | 1.7 |
|
|
|
|
|
| |
Although B. asper and B. schlegelii are found in Colombia, data correspond to venoms from specimens found in Costa Rica.
Present work.
(Núñez ).
(Alape-Girón ), specimens of Pacific versant.
(Lomonte ).
(Mora-Obando ).
Figure 3Bothrops punctatus venom activities.
(A) Inhibition of angiotensin-converting enzyme (ACE) by peak 4 of B. punctatus venom, identified as a BPP-like peptide (Table 1). Each point represents the mean ± SD of three replicates. (B) L-amino acid oxidase activity of B. punctatus venom. Each point represents the mean ± SD of three replicates.
Figure 4Proteolytic (A), phospholipase A2 (B), and cytotoxic (C) activities of Bothrops punctatus venom, compared to the venom of Bothrops asper
Proteolytic activity was determined on azocasein, using 20 μg of each venom. Phospholipase A2 activity was determined on 4-nitro-3-octanoyloxy-benzoic acid, using 20 μg of each venom Cytotoxic activity was determined on C2C12 murine myoblasts, using 40 μg of each venom, as described in Methods. Bars represent mean ± SD of three replicates. For each activity, differences between the two venoms were significant (p < 0.05).