| Literature DB >> 24497997 |
Jackson K Mukonzo1, Joel S Owen2, Jasper Ogwal-Okeng3, Ronald B Kuteesa3, Sarah Nanzigu3, Nelson Sewankambo3, Lehana Thabane4, Lars L Gustafsson5, Colin Ross6, Eleni Aklillu5.
Abstract
BACKGROUND: Pharmacogenetics contributes to inter-individual variability in pharmacokinetics (PK) of efavirenz (EFV), leading to variations in both efficacy and toxicity. The purpose of this study was to assess the effect of genetic factors on EFV pharmacokinetics, treatment outcomes and genotype based EFV dose recommendations for adult HIV-1 infected Ugandans.Entities:
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Year: 2014 PMID: 24497997 PMCID: PMC3909010 DOI: 10.1371/journal.pone.0086919
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Baseline characteristics and CYP2B6*6 and ABCB1 (c.4046A>G) genotypes of the study participants (n = 99).
| Measures of disease status | |
| Log10 viral load (±SD) | 4.95±0.71 |
| CD4 cell count/mL(IQR) | 147 (89–207) |
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| *1/*1 | 31.3% (n = 31) |
| *1/*6 | 54.5% (n = 54) |
| *6/*6 | 14.1% (n = 14) |
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| A/A | 60.6% (n = 60) |
| A/G | 34.3% (n = 34) |
| G/G | 1% (n = 1) |
| Missing | 4% (n = 4) |
Missing was assigned to individuals whose genotypes were not determined. Data presented in the table are the assignments as analyzed.
Figure 1Goodness of Fit.
Individual predicted EFV concentrations (IPRED) versus observed concentrations, by CYP2B6*6 genotype (B66).
Figure 2The individually weighted residuals (WRES) are plotted vs. time.
The dashed line is the zero reference line while the solid line is a smooth nonparametric regression line. The plot demonstrates a good fit of all time point concentration data by the model.
Summary of significant factors in the covariate analysis; forward inclusion (α = 0.05) followed by backward elimination (α = 0.01).
| Covariate-Parameter Relationship (functional form) | ΔOFV | p-value |
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| CYP2B6*6– CL (shift for heterozygous and wild-type) | 30.359 | 2.34×10−7 |
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| 15.883 | 0.0012 |
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| 13.295 25.431 | 0.004 3.004×10−6 |
Final model pharmacokinetic parameters.
| Final Pharmacokinetic Model | Parameter | SE(%CV) |
| Ka (hr−1) | 0.300 Fixed | N/A |
| V (L) | 94.5 | 24.4% |
| CL (L/hr) – CYP2B6*6 (*6/*6) – Homozygous Mutant | 4.54 | 11.9% |
| CL (L/hr) – CYP2B6*6 (*1/*6) – Heterozygous Mutant | 7.92 | 33.5% |
| CL (L/hr) – CYP2B6*6 (*1/*1) – Wild-Type | 9.99 | 26.8% |
| F1 - ABRS 1&2 | 1 Fixed | N/A |
| F1 - ABRS 3 | 0.780 | 40.7% |
| F1 - ABRS 4 | 0.513 | 30.4% |
| IIV CL | 0.134 | 19.9% |
| RV – Proportional (%CV) | 17.3 | 26.3% |
| RV – Additive (ng/mL) | 348 | 31.3% |
Ka = Mean population absorption rate constant, V = Mean population Volume of distribution, CL = Mean population clearance, F1 = Bioavailability fraction, IIV CL = inter-individual variability on Clearance in the population, RV = residual variability.
Area under the curve (AUC) NONMEM estimate values for ABCB1 c. 4046A>G and or CYP2B6* 6 genotypes.
| Genotype | n | Area Under the curve(µg/L·h) ×104 | ||
| CYP2B6*6 |
| Mean (SD) | Range | |
|
| 54 | 6.999 (3.509) | 2.917–19.380 | |
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| 31 | 5.160 (1.426) | 2.796–8.456 | |
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| 14 | 12.221 (4.617) | 4.115–18.334 | |
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| 18 | 8.882(4.726) | 3.876–19.378 |
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| 35 | 6.147(2.216) | 2.936–14.019 | |
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| 8 | 5.658(1.582) | 3.657–7.948 |
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| 21 | 5.114(1.357) | 2.796–8.455 | |
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| 8 | 13.871(3.702) | 7.677–18.334 |
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| 4 | 11.070 (5.420) | 5.155–17.367 | |
The estimations are based on the predicted individual apparent clearance and bioavailability values.
mut = heterozygous plus homozygous variant, wt = homozygous variants.
Four patients did not have a reported ABCB1 genotype and one patient was ABCB1 G/G. These five subjects are not included in these summary statistics for ABCB1, but are included in the general CYP2B6*6 summary above.
Figure 3Distribution of estimated patient AUC values by CYP2B6 genotype.
CYP2B6*1/*1, CYP2B6 *1/*6, and CYP2B6 *6/*6. Dotted line = the mean AUC value in the product label.
Simulation based AUC for 300
| Dose = 300 mg daily | Dose = 450 mg daily | Dose = 600 mg daily | ||||||
| Area Under the curve (µg/L·h) x104 | ||||||||
| number of obs | Mean (±SD) | 95% CI | Mean (±SD) | 95% CI | Mean (±SD) | 95% CI | ||
| All participants | 47000 | 3.63 (1.93) | 1.57–7.58 | 5.44 (2.90) | 2.35–11.06 | 7.25 (3.86) | 3.14–14.75 | |
| ABCB1(c.4046A>G) wt | CYP2B6*6 | |||||||
| *1/*1 | 17500 | 2.5 (0.94) | 1.28–5.41 | 3.75 (1.41) | 1.92–3.50 | 5.0 (1.88) | 2.56–8.49 | |
| *1/*6 | 2000 | 3.16 (1.17) | 1.63–5.34 | 4.74 (1.75) | 2.45–8.01 | 6.32 (2.34) | 3.27–10 68 | |
| *6/*6 | 10500 | 5.57 (2.14) | 2.85–9.53 | 8.36 (3.21) | 4.27–14.29 | 11.14 (4.28) | 5.7–19.05 | |
| ABCB1(c.4046A>G) Mut | ||||||||
| *1/*1 | 4000 | 3.20 (1.21) | 1.65–5.41 | 4.80 (1.81) | 2.48–8.11 | 6.41 (2.41) | 3.31–10.81 | |
| *1/*6 | 9000 | 4.05 (1.54) | 2.10–7.05 | 6.07 (2.32) | 3.14–10.58 | 8.10 (3. 09) | 4.19–14.10 | |
| *6/*6 | 4000 | 7.12 (2.72) | 3.63–12.20 | 10.67 (4.09) | 5.45–18.30 | 14.23 (5.45) | 7.26–24.40 | |
The frequency of each group in these simulations reflects the proportional frequency of the groups in the observed patient dataset.
HIV viral loads at baseline and day 84 of treatment and AUC of study participants who failed to attain viral suppression to below detection by day 84.
| AUC | HIV RNA >40 copies mL−1 | |
| (µg/L·h) | Baseline | Day 84 |
| 27962 | 12170 | 6660 |
| 29359 | 356662 | 108 |
| 36573 | 534688 | 667 |
| 55512 | 900246 | 134 |
| 102750 | 123164 | 134 |
| 183340 | 18030 | 666 |
Data are arranged in order of increasing AUC.