Literature DB >> 24489450

Multiple Change-Point Detection via a Screening and Ranking Algorithm.

Ning Hao1, Yue Selena Niu1, Heping Zhang2.   

Abstract

Let Y1, …, Yn be a sequence whose underlying mean is a step function with an unknown number of the steps and unknown change points. The detection of the change points, namely the positions where the mean changes, is an important problem in such fields as engineering, economics, climatology and bioscience. This problem has attracted a lot of attention in statistics, and a variety of solutions have been proposed and implemented. However, there is scant literature on the theoretical properties of those algorithms. Here, we investigate a recently developed algorithm called the Screening and Ranking Algorithm (SaRa). We characterize the theoretical properties of SaRa and show its superiority over other commonly used algorithms. In particular, we develop a false discovery rate approach to the multiple change-point problem and show a strong sure coverage property for the SaRa.

Entities:  

Keywords:  Change-point detection; copy number variation; false discovery rate; high dimensional data; screening and ranking algorithm

Year:  2013        PMID: 24489450      PMCID: PMC3902887          DOI: 10.5705/ss.2012.018s

Source DB:  PubMed          Journal:  Stat Sin        ISSN: 1017-0405            Impact factor:   1.261


  10 in total

1.  Circular binary segmentation for the analysis of array-based DNA copy number data.

Authors:  Adam B Olshen; E S Venkatraman; Robert Lucito; Michael Wigler
Journal:  Biostatistics       Date:  2004-10       Impact factor: 5.899

2.  Detection of DNA copy number alterations using penalized least squares regression.

Authors:  Tao Huang; Baolin Wu; Paul Lizardi; Hongyu Zhao
Journal:  Bioinformatics       Date:  2005-08-30       Impact factor: 6.937

3.  High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping.

Authors:  Daniel A Peiffer; Jennie M Le; Frank J Steemers; Weihua Chang; Tony Jenniges; Francisco Garcia; Kirt Haden; Jiangzhen Li; Chad A Shaw; John Belmont; Sau Wai Cheung; Richard M Shen; David L Barker; Kevin L Gunderson
Journal:  Genome Res       Date:  2006-08-09       Impact factor: 9.043

4.  A modified Bayes information criterion with applications to the analysis of comparative genomic hybridization data.

Authors:  Nancy R Zhang; David O Siegmund
Journal:  Biometrics       Date:  2007-03       Impact factor: 2.571

5.  Spatial smoothing and hot spot detection for CGH data using the fused lasso.

Authors:  Robert Tibshirani; Pei Wang
Journal:  Biostatistics       Date:  2007-05-18       Impact factor: 5.899

6.  Stochastic segmentation models for array-based comparative genomic hybridization data analysis.

Authors:  Tze Leung Lai; Haipeng Xing; Nancy Zhang
Journal:  Biostatistics       Date:  2007-09-12       Impact factor: 5.899

7.  PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data.

Authors:  Kai Wang; Mingyao Li; Dexter Hadley; Rui Liu; Joseph Glessner; Struan F A Grant; Hakon Hakonarson; Maja Bucan
Journal:  Genome Res       Date:  2007-10-05       Impact factor: 9.043

8.  Optimal Sparse Segment Identification with Application in Copy Number Variation Analysis.

Authors:  X Jessie Jeng; T Tony Cai; Hongzhe Li
Journal:  J Am Stat Assoc       Date:  2012-01-01       Impact factor: 5.033

Review 9.  Copy number variation in human health, disease, and evolution.

Authors:  Feng Zhang; Wenli Gu; Matthew E Hurles; James R Lupski
Journal:  Annu Rev Genomics Hum Genet       Date:  2009       Impact factor: 8.929

10.  THE SCREENING AND RANKING ALGORITHM TO DETECT DNA COPY NUMBER VARIATIONS.

Authors:  Yue S Niu; Heping Zhang
Journal:  Ann Appl Stat       Date:  2012-09       Impact factor: 2.083

  10 in total
  6 in total

1.  THE SCREENING AND RANKING ALGORITHM FOR CHANGE-POINTS DETECTION IN MULTIPLE SAMPLES.

Authors:  Chi Song; Xiaoyi Min; Heping Zhang
Journal:  Ann Appl Stat       Date:  2017-01-05       Impact factor: 2.083

2.  CONSISTENT SELECTION OF THE NUMBER OF CHANGE-POINTS VIA SAMPLE-SPLITTING.

Authors:  Changliang Zou; Guanghui Wang; Runze Li
Journal:  Ann Stat       Date:  2020-02-17       Impact factor: 4.028

3.  A super scalable algorithm for short segment detection.

Authors:  Ning Hao; Yue Selena Niu; Feifei Xiao; Heping Zhang
Journal:  Stat Biosci       Date:  2020-04-18

4.  Shall genomic correlation structure be considered in copy number variants detection?

Authors:  Fei Qin; Xizhi Luo; Guoshuai Cai; Feifei Xiao
Journal:  Brief Bioinform       Date:  2021-11-05       Impact factor: 13.994

5.  Multiple change point detection and validation in autoregressive time series data.

Authors:  Lijing Ma; Andrew J Grant; Georgy Sofronov
Journal:  Stat Pap (Berl)       Date:  2020-07-13       Impact factor: 2.234

6.  Segmentation Method for Ship-Radiated Noise Using the Generalized Likelihood Ratio Test on an Ordinal Pattern Distribution.

Authors:  Lei He; Xiao-Hong Shen; Mu-Hang Zhang; Hai-Yan Wang
Journal:  Entropy (Basel)       Date:  2020-03-25       Impact factor: 2.524

  6 in total

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