| Literature DB >> 24484470 |
Kinuyo Chikamatsu1, Akio Aono, Hiroyuki Yamada, Tetsuhiro Sugamoto, Tomoko Kato, Yuko Kazumi, Kiyoko Tamai, Hideji Yanagisawa, Satoshi Mitarai.
Abstract
BACKGROUND: The rapid identification of acid-fast bacilli recovered from patient specimens as Mycobacterium tuberculosis complex (MTC) is critically important for accurate diagnosis and treatment. A thin-layer immunochromatographic (TLC) assay using anti-MPB64 or anti-MPT64 monoclonal antibodies was developed to discriminate between MTC and non-tuberculosis mycobacteria (NTM). Capilia TB-Neo, which is the improved version of Capilia TB, is recently developed and needs to be evaluated.Entities:
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Year: 2014 PMID: 24484470 PMCID: PMC3916065 DOI: 10.1186/1471-2334-14-54
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
List of reference strains and the results of identification of MTC by using Capilia TB-Neo, SD MPT64, and TBc ID
| ATCC27294 | + | + | + | ATCC51457 | - | - | - | ||
| ATCC25420 | + | + | + | ATCC51848 | - | - | - | ||
| ATCC19210 | + | + | + | ATCC13950 | - | - | - | ||
| ATCC19422 | + | + | + | ATCC12478 | - | - | - | ||
| ATCC19977 | - | - | - | ATCC700732 | - | - | - | ||
| ATCC14473 | - | - | - | ATCC27356 | - | - | - | ||
| ATCC27406 | - | - | - | ATCC51985 | - | - | - | ||
| ATCC27280 | - | - | + | ATCC49865 | - | - | - | ||
| ATCC51304 | - | - | - | ATCC29571 | - | - | - | ||
| ATCC25276 | - | - | - | ATCC00927 | - | - | + | ||
| ATCC23366 | - | - | - | ATCC43059 | - | - | - | ||
| ATCC33464 | - | - | - | ATCC49650 | - | - | - | ||
| ATCC25291 | - | - | - | ATCC25795 | - | - | - | ||
| ATCC19698 | - | - | - | ATCC19530 | - | - | - | ||
| ATCC19978 | - | - | - | ATCC19619 | - | - | - | ||
| ATCC49884 | - | - | - | ATCC27023 | - | - | - | ||
| ATCC51789 | - | - | - | ATCC12670 | - | - | - | ||
| ATCC51384 | - | + | - | ATCC19686 | - | - | - | ||
| ATCC51131 | - | - | - | ATCC14467 | - | - | - | ||
| ATCC51130 | - | - | - | ATCC21497 | - | - | - | ||
| ATCC35750 | - | - | - | ATCC11758 | - | - | - | ||
| ATCC35752 | - | - | - | ATCC33776 | - | - | - | ||
| ATCC19627 | - | - | + | ATCC35087 | - | - | - | ||
| ATCC49826 | - | - | - | ATCC35154 | - | - | - | ||
| ATCC27278 | - | - | - | ATCC27024 | - | - | - | ||
| ATCC49920 | - | - | - | ATCC19981 | - | - | - | ||
| ATCC700090 | - | - | - | ATCC35796 | - | - | - | ||
| ATCC49103 | - | - | - | ATCC700731 | - | - | - | ||
| ATCC19340 | - | - | - | ATCC27962 | - | - | - | ||
| ATCC43910 | - | - | - | ATCC33728 | - | - | - | ||
| ATCC27353 | - | - | - | ATCC25275 | - | - | - | ||
| ATCC14474 | - | - | - | ATCC19420 | - | - | - | ||
| ATCC35931 | - | - | - | ATCC700084 | - | - | - | ||
| ATCC06841 | - | - | - | ATCC33027 | - | - | - | ||
| ATCC49403 | - | - | - | ATCC35799 | - | - | - | ||
| ATCC27726 | - | - | + | ATCC15755 | - | - | - | ||
| ATCC19710 | - | - | - | DSMZ43540 | - | - | - | ||
| ATCC51234 | - | - | - | DSMZ43541 | - | - | - | ||
| ATCC43909 | - | - | - | DSMZ43542 | - | - | - | ||
| ATCC700504 | - | - | - | ATCC19527 | - | - | - | ||
| ATCC14470 | - | - | - | ATCC27282 | - | - | - | ||
| KK33-08 | - | - | - | ATCC700071 | - | - | - | ||
| KK33-53 | - | - | - | ATCC23292 | - | - | - | ||
| KK33-46 | - | - | - | ATCC15483 | - | - | - | ||
| ATCC29548 | - | - | - | ATCC29356 | - | - | - | ||
| ATCC700660 | - | - | - | ATCC700010 | - | - | - | ||
| DSMZ44428 | - | - | - | ATCC19250 | - | - | - | ||
| ATCC51253 | - | - | - | ATCC19247 | - | - | - | ||
| ATCC49874 | - | - | - | ATCC6939 | - | - | - | ||
| ATCC33611 | - | - | - |
Oligonucleotide primers used in PCR and direct sequencing
| MTC identification | | | | |
| 16S rRNA | 285 | GAGAGTTTGATCCTGGCTCAG | 1028 | 7 |
| | 264 | TGCACACAGGCCACAAGGGA | | |
| | 259 | TTTCACGAACAACG GACAA | 591 | |
| | Rv0577F | ATGCCCAAGAGAAGCGAATACAGGCAA | 786 | 14 |
| | Rv0577R | CTATTGCTGCGGTGCGGGCTTCAA | | |
| RD9 | Rv2073cF | TCGCCGCTGCCAGATGAGTC | 600 | 14 |
| | Rv2073cR | TTTGGGAGCCGCCGGTGGTGATGA | | |
| RD12 | Rv3120F | GTCGGCGATAGACCATGAGTCCGTCTCCAT | 404 | 14 |
| | Rv3120R | GCGAAAAGTGGGCGGATGCCAG | | |
| RD1 | ET1 | AAGCGGTTGCCGCCGACCGACC | | 15 |
| | ET2 | CTGGCTATATTCCTGGGCCCGG | | |
| | ET3 | GAGGCGATCTGGCGGTTTGGGG | | |
| RD4 | Rv1510F | GTGCGCTCCACCCAAATAGTTGC | 1033 | 15 |
| | Rv1510R | TGTCGACCTGGGGCACAAATCAGTC | | |
| RD7 | Rv1970F | GCGCAGCTGCCGGATGTCAAC | 1116 | 15 |
| | Rv1970R | CGCCGGCAGCCTCACGAAATG | | |
| MiD3 | IS1561F | GCTGGGTGGGCCCTGGAATACGTGAACTCT | 530 | 15 |
| | IS1561R | AACTGCTCACCCTGGCCACCACCATGGACT | | |
| Distinguish sub-strains of BCG | | | | |
| RD2 | RD2l | CCAGATTCAAATGTCCGACC | | 16 |
| | RD2r | GTGTCATAGGTGATTGGCTT | | |
| RD14 | RD14l | CAGGGTTGAAGGAATGCGTGTC | | 16 |
| | RD14r | CTGGTACACCTGGGGAATCTGG | | |
| RD15 | RD8l | ACTCCTAGCTTTGCTGTGCGCT | | 16 |
| | RD8r | GTACTGCGGGATTTGCAGGTTC | | |
| RD16 | RD16nf | ACATTGGGAAATCGCTGCTGTTG | | 17 |
| | RD16nr | GGCTGGTGTTTCGTCACTTC | | |
| | C3 | GCGCGAGAGCCCGAACTGC | | 16 |
| | C5 | GCGCAGCAGAAACGTCAGC | | |
| Sequencing | | | | |
| | mpb64W-F | ACTCAGATATCGCGGCAATC | 1061 | this study |
| | mpb64W-R | CGATCACCTCACCTGGAGTT | | |
| Rv1977 | Rv1977F | GTTTCCCGAGATCAGCTCAA | 348 | this study |
| | Rv1977R | ATCTCGTCGTGTGTCACCAG | | |
| Rv1981c | Rv1981F | GATCGAATGCAGGCTGGTAT | 399 | this study |
| Rv1981R | ACTACTACCGCGGTGACGAC | |||
Figure 1Multiplex PCR analysis of BCG sub-strains and clinical isolates. 1: BCG Pasteur (ATCC35734), 2: BCG Glaxo (ATCC35741), 3: BCG Copenhagen (ATCC27290), 4: BCG Russian (ATCC35740), 5: BCG Montreal (ATCC35735), 6: BCG Connaught (ATCC35745), 7: BCG Danish, 8: BCG Tokyo, 9: Sample 421, 10: Sample 467, 11: Sample 475, M: Size marker.
Results of PCR detection and Capilia TB-Neo of MTC with clinical isolates
| + | + | + | NT | NT | NT | NT | + | 98.0 | |
| + | + | + | NT | NT | NT | NT | - | 0.4 | |
| + | + | - | + | + | + | + | + | 1.0 | |
| + | - | - | - | - | + | - | + | 0.4 | |
| + | - | - | - | - | + | - | - | 0.2 | |
aConfirmed to be M. tuberculosis by hsp65 sequencing and morphology, bConfirmed by contracted RD16, cConfirmed by absence of RD2 and RD15, and contracted SenX3-RegX3, NT: Not tested.