Literature DB >> 24483410

Method to describe stochastic dynamics using an optimal coordinate.

Sergei V Krivov1.   

Abstract

A general method to describe the stochastic dynamics of Markov processes is suggested. The method aims to solve three related problems: the determination of an optimal coordinate for the description of stochastic dynamics; the reconstruction of time from an ensemble of stochastic trajectories; and the decomposition of stationary stochastic dynamics into eigenmodes which do not decay exponentially with time. The problems are solved by introducing additive eigenvectors which are transformed by a stochastic matrix in a simple way - every component is translated by a constant distance. Such solutions have peculiar properties. For example, an optimal coordinate for stochastic dynamics with detailed balance is a multivalued function. An optimal coordinate for a random walk on a line corresponds to the conventional eigenvector of the one-dimensional Dirac equation. The equation for the optimal coordinate in a slowly varying potential reduces to the Hamilton-Jacobi equation for the action function.

Year:  2013        PMID: 24483410     DOI: 10.1103/PhysRevE.88.062131

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  1 in total

1.  Optimal reaction coordinate as a biomarker for the dynamics of recovery from kidney transplant.

Authors:  Sergei V Krivov; Hayley Fenton; Paul J Goldsmith; Rajendra K Prasad; Julie Fisher; Emanuele Paci
Journal:  PLoS Comput Biol       Date:  2014-06-26       Impact factor: 4.475

  1 in total

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