Literature DB >> 24481599

Bioorganometallic chemistry with IspG and IspH: structure, function, and inhibition of the [Fe(4)S(4)] proteins involved in isoprenoid biosynthesis.

Weixue Wang1, Eric Oldfield.   

Abstract

Enzymes of the methylerythritol phosphate pathway of n class="Chemical">isoprenoid biosynthesis are attractive anti-infective drug targets. The last two enzymes of this pathway, IspG and IspH, are [Fe4 S4 ] proteins that are not produced by humans and catalyze 2 H(+) / 2 e(-) reductions with novel mechanisms. In this Review, we summarize recent advances in structural, mechanistic, and inhibitory studies of these two enzymes. In particular, mechanistic proposals involving bioorganometallic intermediates are presented, and compared with other mechanistic possibilities. In addition, inhibitors based on substrate analogues as well as developed by rational design and compound-library screening, are discussed. The results presented support bioorganometallic catalytic mechanisms for IspG and IspH, and open up new routes to anti-infective drug design targeting [Fe4 S4 ] clusters in proteins.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  EPR spectroscopy; bioinorganic chemistry; biophysics; enzyme catalysis; terpenoids

Mesh:

Substances:

Year:  2014        PMID: 24481599      PMCID: PMC3997630          DOI: 10.1002/anie.201306712

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  81 in total

Review 1.  The discovery of a mevalonate-independent pathway for isoprenoid biosynthesis in bacteria, algae and higher plants.

Authors:  M Rohmer
Journal:  Nat Prod Rep       Date:  1999-10       Impact factor: 13.423

2.  Isoprenoid biosynthesis through the methylerythritol phosphate pathway: the (E)-4-hydroxy-3-methylbut-2-enyl diphosphate synthase (GcpE) is a [4Fe-4S] protein.

Authors:  Myriam Seemann; Bernadette Tse Sum Bui; Murielle Wolff; Denis Tritsch; Narciso Campos; Albert Boronat; Andrée Marquet; Michel Rohmer
Journal:  Angew Chem Int Ed Engl       Date:  2002-11-15       Impact factor: 15.336

3.  Structure, function and inhibition of the two- and three-domain 4Fe-4S IspG proteins.

Authors:  Yi-Liang Liu; Francisco Guerra; Ke Wang; Weixue Wang; Jikun Li; Cancan Huang; Wei Zhu; Kevin Houlihan; Zhi Li; Yong Zhang; Satish K Nair; Eric Oldfield
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-14       Impact factor: 11.205

4.  Functional characterization of GcpE, an essential enzyme of the non-mevalonate pathway of isoprenoid biosynthesis.

Authors:  Ann-Kristin Kollas; Evert C Duin; Matthias Eberl; Boran Altincicek; Martin Hintz; Armin Reichenberg; Dajana Henschker; Anke Henne; Irina Steinbrecher; Dmitry N Ostrovsky; Reiner Hedderich; Ewald Beck; Hassan Jomaa; Jochen Wiesner
Journal:  FEBS Lett       Date:  2002-12-18       Impact factor: 4.124

Review 5.  Methylerythritol phosphate pathway of isoprenoid biosynthesis.

Authors:  Lishan Zhao; Wei-chen Chang; Youli Xiao; Hung-wen Liu; Pinghua Liu
Journal:  Annu Rev Biochem       Date:  2013       Impact factor: 23.643

6.  Mechanistic studies of an IspH-catalyzed reaction: implications for substrate binding and protonation in the biosynthesis of isoprenoids.

Authors:  Wei-chen Chang; Youli Xiao; Hung-wen Liu; Pinghua Liu
Journal:  Angew Chem Int Ed Engl       Date:  2011-10-24       Impact factor: 15.336

7.  Spectroscopic characterization of site-specific [Fe(4)S(4)] cluster chemistry in ferredoxin:thioredoxin reductase: implications for the catalytic mechanism.

Authors:  Elizabeth M Walters; Ricardo Garcia-Serres; Guy N L Jameson; Dominique A Glauser; Florence Bourquin; Wanda Manieri; Peter Schürmann; Michael K Johnson; Boi Hanh Huynh
Journal:  J Am Chem Soc       Date:  2005-07-06       Impact factor: 15.419

8.  Structure of (E)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase, the terminal enzyme of the non-mevalonate pathway.

Authors:  Ingo Rekittke; Jochen Wiesner; Rene Röhrich; Ulrike Demmer; Eberhard Warkentin; Weiya Xu; Kathrin Troschke; Martin Hintz; Joo Hwan No; Evert C Duin; Eric Oldfield; Hassan Jomaa; Ulrich Ermler
Journal:  J Am Chem Soc       Date:  2008-12-24       Impact factor: 15.419

9.  THE 1-DEOXY-D-XYLULOSE-5-PHOSPHATE PATHWAY OF ISOPRENOID BIOSYNTHESIS IN PLANTS.

Authors:  Hartmut K. Lichtenthaler
Journal:  Annu Rev Plant Physiol Plant Mol Biol       Date:  1999-06

10.  Biologically related iron-sulfur clusters as reaction centers. Reduction of acetylene to ethylene in systems based on [Fe4S4(SR)4]3-.

Authors:  R S McMillan; J Renaud; J G Reynolds; R H Holm
Journal:  J Inorg Biochem       Date:  1979-11       Impact factor: 4.155

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  17 in total

1.  Structure and Function of Four Classes of the 4Fe-4S Protein, IspH.

Authors:  Guodong Rao; Eric Oldfield
Journal:  Biochemistry       Date:  2016-07-12       Impact factor: 3.162

Review 2.  Resistance-resistant antibiotics.

Authors:  Eric Oldfield; Xinxin Feng
Journal:  Trends Pharmacol Sci       Date:  2014-11-05       Impact factor: 14.819

3.  Atomic-Resolution Structures of Discrete Stages on the Reaction Coordinate of the [Fe4S4] Enzyme IspG (GcpE).

Authors:  Felix Quitterer; Annika Frank; Ke Wang; Guodong Rao; Bing O'Dowd; Jikun Li; Francisco Guerra; Safwat Abdel-Azeim; Adelbert Bacher; Jörg Eppinger; Eric Oldfield; Michael Groll
Journal:  J Mol Biol       Date:  2015-04-11       Impact factor: 5.469

4.  Spectroscopic and Computational Investigations of Ligand Binding to IspH: Discovery of Non-diphosphate Inhibitors.

Authors:  Bing O'Dowd; Sarah Williams; Hongxin Wang; Joo Hwan No; Guodong Rao; Weixue Wang; J Andrew McCammon; Stephen P Cramer; Eric Oldfield
Journal:  Chembiochem       Date:  2017-04-07       Impact factor: 3.164

5.  Metalloenzymes involved in carotenoid biosynthesis in plants.

Authors:  Ian Davis; Jiafeng Geng; Aimin Liu
Journal:  Methods Enzymol       Date:  2022-02-11       Impact factor: 1.682

6.  An [Fe4S4]3+-Alkyl Cluster Stabilized by an Expanded Scorpionate Ligand.

Authors:  Alex McSkimming; Arun Sridharan; Niklas B Thompson; Peter Müller; Daniel L M Suess
Journal:  J Am Chem Soc       Date:  2020-08-06       Impact factor: 15.419

7.  Broken-Symmetry DFT Computations for the Reaction Pathway of IspH, an Iron-Sulfur Enzyme in Pathogenic Bacteria.

Authors:  Patrick G Blachly; Gregory M Sandala; Debra Ann Giammona; Donald Bashford; J Andrew McCammon; Louis Noodleman
Journal:  Inorg Chem       Date:  2015-06-22       Impact factor: 5.165

8.  Synthesis of methylerythritol phosphate analogues and their evaluation as alternate substrates for IspDF and IspE from Agrobacterium tumefaciens.

Authors:  Sergiy G Krasutsky; Marek Urbansky; Chad E Davis; Christian Lherbet; Robert M Coates; C Dale Poulter
Journal:  J Org Chem       Date:  2014-09-23       Impact factor: 4.354

9.  LytB1 and LytB2 of Mycobacterium tuberculosis Are Not Genetically Redundant.

Authors:  Amanda Claire Brown; Rachel Kokoczka; Tanya Parish
Journal:  PLoS One       Date:  2015-08-26       Impact factor: 3.240

10.  Kinetic characterization and allosteric inhibition of the Yersinia pestis 1-deoxy-D-xylulose 5-phosphate reductoisomerase (MEP synthase).

Authors:  Amanda Haymond; Chinchu Johny; Tyrone Dowdy; Brandon Schweibenz; Karen Villarroel; Richard Young; Clark J Mantooth; Trishal Patel; Jessica Bases; Geraldine San Jose; Emily R Jackson; Cynthia S Dowd; Robin D Couch
Journal:  PLoS One       Date:  2014-08-29       Impact factor: 3.240

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