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Literature DB >> 24481530

Where long noncoding RNAs meet DNA methylation.

Abstract

DNA methylation is a fundamental epigenetic mechanism governing regulation of gene expression during mammalian development. A recent study published in Nature shows a novel long noncoding RNA (lncRNA) arising from the CEBPA gene locus (termed ecCEBPA) that is critical for regulation of DNA methylation at this site through the association of ecCEBPA with DNA methyltransferase 1, DNMT1.

Entities: Gene Species

Mesh：

Substances：

Year: 2014 PMID： 24481530 PMCID： PMC3945889 DOI： 10.1038/cr.2014.13

Source DB: PubMed Journal: Cell Res ISSN： 1001-0602 Impact factor: 25.617

12 in total

Review 1. X inactivation, differentiation, and DNA methylation.

Authors: A D Riggs
Journal: Cytogenet Cell Genet Date: 1975

2. The Dnmt1 DNA-(cytosine-C5)-methyltransferase methylates DNA processively with high preference for hemimethylated target sites.

Authors: Andrea Hermann; Rachna Goyal; Albert Jeltsch
Journal: J Biol Chem Date: 2004-08-31 Impact factor: 5.157

3. DNA modification mechanisms and gene activity during development.

Authors: R Holliday; J E Pugh
Journal: Science Date: 1975-01-24 Impact factor: 47.728

4. Mouse transcriptome: neutral evolution of 'non-coding' complementary DNAs.

Authors: Jun Wang; Jianguo Zhang; Hongkun Zheng; Jun Li; Dongyuan Liu; Heng Li; Ram Samudrala; Jun Yu; Gane Ka-Shu Wong
Journal: Nature Date: 2004-10-14 Impact factor: 49.962

Review 5. Long non-coding RNAs: insights into functions.

Authors: Tim R Mercer; Marcel E Dinger; John S Mattick
Journal: Nat Rev Genet Date: 2009-03 Impact factor: 53.242

Review 6. CpG-rich islands and the function of DNA methylation.

Authors: A P Bird
Journal: Nature Date: 1986 May 15-21 Impact factor: 49.962

7. Targeted RNA sequencing reveals the deep complexity of the human transcriptome.

Authors: Tim R Mercer; Daniel J Gerhardt; Marcel E Dinger; Joanna Crawford; Cole Trapnell; Jeffrey A Jeddeloh; John S Mattick; John L Rinn
Journal: Nat Biotechnol Date: 2011-11-13 Impact factor: 54.908

8. A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.

Authors: Kevin C Wang; Yul W Yang; Bo Liu; Amartya Sanyal; Ryan Corces-Zimmerman; Yong Chen; Bryan R Lajoie; Angeline Protacio; Ryan A Flynn; Rajnish A Gupta; Joanna Wysocka; Ming Lei; Job Dekker; Jill A Helms; Howard Y Chang
Journal: Nature Date: 2011-03-20 Impact factor: 49.962

9. A large fraction of extragenic RNA pol II transcription sites overlap enhancers.

Authors: Francesca De Santa; Iros Barozzi; Flore Mietton; Serena Ghisletti; Sara Polletti; Betsabeh Khoramian Tusi; Heiko Muller; Jiannis Ragoussis; Chia-Lin Wei; Gioacchino Natoli
Journal: PLoS Biol Date: 2010-05-11 Impact factor: 8.029

10. Activating RNAs associate with Mediator to enhance chromatin architecture and transcription.

Authors: Fan Lai; Ulf A Orom; Matteo Cesaroni; Malte Beringer; Dylan J Taatjes; Gerd A Blobel; Ramin Shiekhattar
Journal: Nature Date: 2013-02-17 Impact factor: 49.962

21 in total

Review 1. Long non-coding RNAs in cancer: implications for personalized therapy.

Authors: Marianna Vitiello; Andrea Tuccoli; Laura Poliseno
Journal: Cell Oncol (Dordr) Date: 2014-08-12 Impact factor: 6.730

2. LBH Gene Transcription Regulation by the Interplay of an Enhancer Risk Allele and DNA Methylation in Rheumatoid Arthritis.

Authors: Deepa Hammaker; John W Whitaker; Keisuke Maeshima; David L Boyle; Anna-Karin H Ekwall; Wei Wang; Gary S Firestein
Journal: Arthritis Rheumatol Date: 2016-11 Impact factor: 10.995

Review 3. 'Memory and molecular turnover,' 30 years after inception.

Authors: Richard B Meagher
Journal: Epigenetics Chromatin Date: 2014-12-09 Impact factor: 4.954

4. Lnc2Meth: a manually curated database of regulatory relationships between long non-coding RNAs and DNA methylation associated with human disease.

Authors: Hui Zhi; Xin Li; Peng Wang; Yue Gao; Baoqing Gao; Dianshuang Zhou; Yan Zhang; Maoni Guo; Ming Yue; Weitao Shen; Shangwei Ning; Lianhong Jin; Xia Li
Journal: Nucleic Acids Res Date: 2018-01-04 Impact factor: 16.971

5. RNA Sequencing and Co-expressed Long Non-coding RNA in Modern and Wild Wheats.

Authors: Halise Busra Cagirici; Burcu Alptekin; Hikmet Budak
Journal: Sci Rep Date: 2017-09-06 Impact factor: 4.379

Review 6. Long Noncoding RNAs as Biomarkers in Cancer.

Authors: Luka Bolha; Metka Ravnik-Glavač; Damjan Glavač
Journal: Dis Markers Date: 2017-05-29 Impact factor: 3.434

7. Single-base resolution methylomes of upland cotton (Gossypium hirsutum L.) reveal epigenome modifications in response to drought stress.

Authors: Xuke Lu; Xiaoge Wang; Xiugui Chen; Na Shu; Junjuan Wang; Delong Wang; Shuai Wang; Weili Fan; Lixue Guo; Xiaoning Guo; Wuwei Ye
Journal: BMC Genomics Date: 2017-04-13 Impact factor: 3.969