Literature DB >> 24481493

In vivo cell biology in zebrafish - providing insights into vertebrate development and disease.

Ana M Vacaru1, Gokhan Unlu, Marie Spitzner, Marina Mione, Ela W Knapik, Kirsten C Sadler.   

Abstract

Over the past decades, studies using zebrafish have significantly advanced our understanding of the cellular basis for development and human diseases. Zebrafish have rapidly developing transparent embryos that allow comprehensive imaging of embryogenesis combined with powerful genetic approaches. However, forward genetic screens in zebrafish have generated unanticipated findings that are mirrored by human genetic studies: disruption of genes implicated in basic cellular processes, such as protein secretion or cytoskeletal dynamics, causes discrete developmental or disease phenotypes. This is surprising because many processes that were assumed to be fundamental to the function and survival of all cell types appear instead to be regulated by cell-specific mechanisms. Such discoveries are facilitated by experiments in whole animals, where zebrafish provides an ideal model for visualization and manipulation of organelles and cellular processes in a live vertebrate. Here, we review well-characterized mutants and newly developed tools that underscore this notion. We focus on the secretory pathway and microtubule-based trafficking as illustrative examples of how studying cell biology in vivo using zebrafish has broadened our understanding of the role fundamental cellular processes play in embryogenesis and disease.

Entities:  

Keywords:  Microtubule transport; Protein secretion; Vesicular transport; Zebrafish

Mesh:

Substances:

Year:  2014        PMID: 24481493      PMCID: PMC4007761          DOI: 10.1242/jcs.140194

Source DB:  PubMed          Journal:  J Cell Sci        ISSN: 0021-9533            Impact factor:   5.285


  121 in total

Review 1.  Cytoplasmic dynein and dynactin in cell division and intracellular transport.

Authors:  S Karki; E L Holzbaur
Journal:  Curr Opin Cell Biol       Date:  1999-02       Impact factor: 8.382

Review 2.  Transposon tools and methods in zebrafish.

Authors:  Koichi Kawakami
Journal:  Dev Dyn       Date:  2005-10       Impact factor: 3.780

Review 3.  Selective plane illumination microscopy techniques in developmental biology.

Authors:  Jan Huisken; Didier Y R Stainier
Journal:  Development       Date:  2009-06       Impact factor: 6.868

4.  Mechanism of positioning the cell nucleus in vertebrate photoreceptors.

Authors:  Motokazu Tsujikawa; Yoshihiro Omori; Janisha Biyanwila; Jarema Malicki
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-04       Impact factor: 11.205

5.  Heritable gene targeting in zebrafish using customized TALENs.

Authors:  Peng Huang; An Xiao; Mingguo Zhou; Zuoyan Zhu; Shuo Lin; Bo Zhang
Journal:  Nat Biotechnol       Date:  2011-08-05       Impact factor: 54.908

6.  Activating transcription factor 6 plays protective and pathological roles in steatosis due to endoplasmic reticulum stress in zebrafish.

Authors:  Ayca Cinaroglu; Chuan Gao; Dru Imrie; Kirsten C Sadler
Journal:  Hepatology       Date:  2011-06-23       Impact factor: 17.425

7.  The Rip11/Rab11-FIP5 and kinesin II complex regulates endocytic protein recycling.

Authors:  Eric Schonteich; Gayle M Wilson; Jemima Burden; Colin R Hopkins; Keith Anderson; James R Goldenring; Rytis Prekeris
Journal:  J Cell Sci       Date:  2008-10-28       Impact factor: 5.285

8.  Congenital dyserythropoietic anemia type II (CDAII) is caused by mutations in the SEC23B gene.

Authors:  Paola Bianchi; Elisa Fermo; Cristina Vercellati; Carla Boschetti; Wilma Barcellini; Alessandra Iurlo; Anna Paola Marcello; Pier Giorgio Righetti; Alberto Zanella
Journal:  Hum Mutat       Date:  2009-09       Impact factor: 4.878

9.  Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy.

Authors:  Andrew G York; Sapun H Parekh; Damian Dalle Nogare; Robert S Fischer; Kelsey Temprine; Marina Mione; Ajay B Chitnis; Christian A Combs; Hari Shroff
Journal:  Nat Methods       Date:  2012-05-13       Impact factor: 28.547

10.  Efficient genome editing in zebrafish using a CRISPR-Cas system.

Authors:  Woong Y Hwang; Yanfang Fu; Deepak Reyon; Morgan L Maeder; Shengdar Q Tsai; Jeffry D Sander; Randall T Peterson; J-R Joanna Yeh; J Keith Joung
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

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  27 in total

1.  Tensile properties of craniofacial tendons in the mature and aged zebrafish.

Authors:  Rishita R Shah; Nandan L Nerurkar; Calvin C Wang; Jenna L Galloway
Journal:  J Orthop Res       Date:  2015-03-02       Impact factor: 3.494

Review 2.  Trafficking mechanisms of extracellular matrix macromolecules: insights from vertebrate development and human diseases.

Authors:  Gokhan Unlu; Daniel S Levic; David B Melville; Ela W Knapik
Journal:  Int J Biochem Cell Biol       Date:  2013-12-09       Impact factor: 5.085

3.  Animal model of Sar1b deficiency presents lipid absorption deficits similar to Anderson disease.

Authors:  Daniel S Levic; J R Minkel; Wen-Der Wang; Witold M Rybski; David B Melville; Ela W Knapik
Journal:  J Mol Med (Berl)       Date:  2015-01-07       Impact factor: 4.599

4.  GRIK5 Genetically Regulated Expression Associated with Eye and Vascular Phenomes: Discovery through Iteration among Biobanks, Electronic Health Records, and Zebrafish.

Authors:  Gokhan Unlu; Eric R Gamazon; Xinzi Qi; Daniel S Levic; Lisa Bastarache; Joshua C Denny; Dan M Roden; Ilya Mayzus; Max Breyer; Xue Zhong; Anuar I Konkashbaev; Andrey Rzhetsky; Ela W Knapik; Nancy J Cox
Journal:  Am J Hum Genet       Date:  2019-02-28       Impact factor: 11.025

Review 5.  Genome engineering: Drosophila melanogaster and beyond.

Authors:  Koen J T Venken; Alejandro Sarrion-Perdigones; Paul J Vandeventer; Nicholas S Abel; Audrey E Christiansen; Kristi L Hoffman
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2015-10-08       Impact factor: 5.814

6.  trappc11 is required for protein glycosylation in zebrafish and humans.

Authors:  Charles DeRossi; Ana Vacaru; Ruhina Rafiq; Ayca Cinaroglu; Dru Imrie; Shikha Nayar; Anastasia Baryshnikova; Miroslav P Milev; Daniela Stanga; Dhara Kadakia; Ningguo Gao; Jaime Chu; Hudson H Freeze; Mark A Lehrman; Michael Sacher; Kirsten C Sadler
Journal:  Mol Biol Cell       Date:  2016-02-24       Impact factor: 4.138

7.  Early life stage transient aristolochic acid exposure induces behavioral hyperactivity but not nephrotoxicity in larval zebrafish.

Authors:  Jiangfei Chen; Aijun Kong; Delia Shelton; Haojia Dong; Jiani Li; Fan Zhao; Chenglian Bai; Kaiyu Huang; Wen Mo; Shan Chen; Hui Xu; Robyn L Tanguay; Qiaoxiang Dong
Journal:  Aquat Toxicol       Date:  2021-07-18       Impact factor: 4.964

8.  Probiotic Yeasts and Vibrio anguillarum Infection Modify the Microbiome of Zebrafish Larvae.

Authors:  Orlando Vargas; María Soledad Gutiérrez; Mario Caruffo; Benjamín Valderrama; Daniel A Medina; Katherine García; Angélica Reyes-Jara; Magaly Toro; Carmen G Feijóo; Paola Navarrete
Journal:  Front Microbiol       Date:  2021-06-23       Impact factor: 5.640

9.  Potential probiotic yeasts isolated from the fish gut protect zebrafish (Danio rerio) from a Vibrio anguillarum challenge.

Authors:  Mario Caruffo; Natalie Navarrete; Oscar Salgado; Angélica Díaz; Paulina López; Katherine García; Carmen G Feijóo; Paola Navarrete
Journal:  Front Microbiol       Date:  2015-10-07       Impact factor: 5.640

10.  The RNA Binding Protein Igf2bp1 Is Required for Zebrafish RGC Axon Outgrowth In Vivo.

Authors:  John A Gaynes; Hideo Otsuna; Douglas S Campbell; John P Manfredi; Edward M Levine; Chi-Bin Chien
Journal:  PLoS One       Date:  2015-09-01       Impact factor: 3.240

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