| Literature DB >> 24481180 |
Shahid M Khan1, Sarah E Reece, Andrew P Waters, Chris J Janse, Szymon Kaczanowski.
Abstract
BACKGROUND: Disease-causing organisms are notorious for fast rates of molecular evolution and the ability to adapt rapidly to changes in their ecology. Sex plays a key role in evolution, and recent studies, in humans and other multicellular organisms, document that genes expressed principally or exclusively in males exhibit the fastest rates of adaptive evolution. However, despite the importance of sexual reproduction for many unicellular taxa, sex-biased gene expression and its evolutionary implications have been overlooked.Entities:
Keywords: Plasmodium; gene expression; host–parasite coevolution; sex-specific selection
Year: 2012 PMID: 24481180 PMCID: PMC4183958 DOI: 10.1093/emph/eos003
Source DB: PubMed Journal: Evol Med Public Health ISSN: 2050-6201
Figure 1.Stage-specific rates of evolution. Estimated as dN/dS, for genes expressed in sexual (male, female) and asexual blood stage malaria parasites. (A) Pattern of ‘stage-specific’ expression of genes based on proteomes of P. berghei sexual and asexual blood stages. Red represents the total number of proteins identified in each proteome. Proteins are subdivided into putative membrane and non-membrane proteins. Numbers inside the circles refer to the number of putative non-membrane proteins (solid background) and putative membrane proteins (shaded background) detected exclusively in proteomes of Males, Females, Asexual Stages or detected in all three stages (All Stages). (B–D) Rates of evolution determined by comparing genes from each closely related pair of Plasmodium species. The genes used for this analysis are the orthologs of the P. berghei genes identified in (A). P. berghei and P. yoelii (B); P. falciparum and P. reichenowi (C); P. vivax and P. knowlesi (D).
Figure 2.Stage- and location-specific rates of evolution. Estimated as dN/dS, for predicted non-membrane (solid bars) and membrane (shaded bars) proteins expressed in sexual (male, female) and asexual blood stage malaria parasites. Genes were classified according to their exclusive detection in P. berghei proteomes of Males, Females, Asexual Stages or All Stages (see Fig. 1), The rates of evolution were determined by comparison of genes of the following pairs of Plasmodium species: P. berghei and P. yoelii (A); P. falciparum and P. reichenowi (B); P. vivax and P. knowlesi (C).
Figure 3.The strength of diversifying selection. Estimated as pN/pS, for P. falciparum proteins with (solid bars) or without predicted immune epitopes (shaded bars) expressed in sexual (male, female) and asexual blood stage malaria parasites. (A) Percentage of proteins containing immune epitopes identified from the Immune Epitope Database and Analysis Resource. Genes were classified according to their exclusive detection in P. berghei proteomes of Males, Females, Asexual Stages or All Stages (see Fig. 1). The strength of diversifying selection on P. falciparum predicted non-membrane (B) and membrane (C) proteins.
Adaptive Male evolution
| Number of genes | Genes with frequent polymorphisms | ||
|---|---|---|---|
| Male | |||
| All | 163 | 21 | 0.07 |
| Membrane excluded | 139 | 17 | 0.26 |
| Female | |||
| All | 74 | 8 | −0.94 |
| Membrane excluded | 57 | 5 | −0.41 |
| Asexual blood | |||
| All | 137 | 25 | −0.52 |
| Membrane excluded | 109 | 19 | −0.79 |
| All stages | |||
| All | 237 | 18 | −5.35 |
| Membrane excluded | 211 | 15 | −7.07 |
Estimates of the fraction (α) of fixed non-synonymous polymorphism due to positive selection, with or without restriction to frequent polymorphisms. Natural isolates of P. falciparum (Dd2, HB3, 7G8, D10, D6, Santa Lucia, K1, RO-33, IT, FCC-2/Hainan, 3D7, Senegal, IGH-CR14) and P. reichenowi are compared. We classify frequent polymorphisms as those observed in four or more isolates.