Literature DB >> 24479317

[Computational genome analysis of three marine algoviruses].

O A Stepanova, A L Boĭko, I S Shcherbatenko.   

Abstract

Computational analysis of genomic sequences of three new marine algoviruses: Tetraselmis viridis virus (TvV-S20 and TvV-SI1 strains) and Dunaliella viridis virus (DvV-SI2 strain) was conducted. Both considerable similarity and essential distinctions between studied strains and the most studied marine algoviruses of Phycodnaviridae family were revealed. Our data show that the tested strains are new viruses with the following features: only they were isolated from marine eukaryotic microalgae T. viridis and D. viridis, coding sequences (CDSs) of their genomes are localized mainly on one of the DNA strands and form several clusters with short intergenic spaces; there are considerable variations in genome structure within viruses and their strains; viral genomic DNA has a high GC-content (55.5 - 67.4%); their genes contain no well-known optimal contexts of translation start codones, and the contexts of terminal codons read-through; the vast majority of viral genes and proteins do not have any matches in gene banks.

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Year:  2013        PMID: 24479317

Source DB:  PubMed          Journal:  Mikrobiol Z        ISSN: 1028-0987


  3 in total

1.  Influence of a Constant Magnetic Field on the Infectious Titer of Black Sea Algal Viruses.

Authors:  O A Stepanova; P V Gaisky; S A Sholar
Journal:  Biophysics (Oxf)       Date:  2022-06-29

2.  Integrated viral elements suggest the dual lifestyle of Tetraselmis spp. Polinton-like viruses.

Authors:  Emily E Chase; Christelle Desnues; Guillaume Blanc
Journal:  Virus Evol       Date:  2022-07-27

3.  A novel group of diverse Polinton-like viruses discovered by metagenome analysis.

Authors:  Natalya Yutin; Sofiya Shevchenko; Vladimir Kapitonov; Mart Krupovic; Eugene V Koonin
Journal:  BMC Biol       Date:  2015-11-11       Impact factor: 7.431

  3 in total

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