Literature DB >> 24478935

Manipulating In-House Designed Drug Databases For The Prediction of pH-Dependent Aqueous Drug Solubility.

Malcolm J D'Souza1, Ghada J Alabed1, Melissa Earley1, Natalia Roberts2, Fady J Gerges3.   

Abstract

Chemical, pharmacokinetic, and pharmacodynamics properties are available in the package inserts of every Food and Drug Administration (FDA) approved prescription drug, including all available chemotherapy drugs. These inserts follow a specific format imposed by the FDA. Whether chemotherapy drugs are administered via the parenteral route or alimentary tract, a significant factor affecting their bioavailability, elimination and consequently the drug's effectiveness and potency, is its state of aqueous solubility. Water solubility has always lent itself poorly to the different predictive and experimental measures employed in the determination of a useful quantitative assessment. In this project, we first built a chemical structure based searchable database for 85 FDA approved chemotherapy drugs and then used Bio-Rad's KnowItAll® Informatics suite to focus on the drugs pH-dependent water solubility prediction. We compared the predicted values for water solubility to the available values reported in the drug inserts, testing the practical utility and the predictive ability of our model in reporting such a clinically relevant, underreported pharmacokinetic parameter. A relational cancer drug database (MySQL) was created to further facilitate analysis and/or prediction of a chemotherapy compound's missing pharmacokinetic properties.

Entities:  

Keywords:  ADME/Tox; ADMET; Drug database; FDA; clinical data; data management; drug solubility; pH profiles; undergraduate research

Year:  2013        PMID: 24478935      PMCID: PMC3903345          DOI: 10.19030/ajhs.v4i3.8010

Source DB:  PubMed          Journal:  Am J Health Sci        ISSN: 2157-9636


  15 in total

1.  Structure Activity Relationships (SARs) Using a Structurally Diverse Drug Database: Validating Success of Predictor Tools.

Authors:  Malcolm J D'Souza; Fumie Koyoshi; Lynn M Everett
Journal:  Pharm Rev       Date:  2009 Sep-Oct

Review 2.  In silico pharmacology for drug discovery: methods for virtual ligand screening and profiling.

Authors:  S Ekins; J Mestres; B Testa
Journal:  Br J Pharmacol       Date:  2007-06-04       Impact factor: 8.739

Review 3.  Mining chemical structural information from the drug literature.

Authors:  Debra L Banville
Journal:  Drug Discov Today       Date:  2006-01       Impact factor: 7.851

4.  Medicine. Moving toward transparency of clinical trials.

Authors:  Deborah A Zarin; Tony Tse
Journal:  Science       Date:  2008-03-07       Impact factor: 47.728

5.  Educating patients about their medications: the potential and limitations of written drug information.

Authors:  William H Shrank; Jerry Avorn
Journal:  Health Aff (Millwood)       Date:  2007 May-Jun       Impact factor: 6.301

6.  The new Food and Drug Administration drug package insert: implications for patient safety and clinical care.

Authors:  Kelley Teed Watson; Paul G Barash
Journal:  Anesth Analg       Date:  2009-01       Impact factor: 5.108

7.  Highlights of drug package inserts and the website DailyMed: the need for further improvement in package inserts to help busy prescribers.

Authors:  Jose de Leon
Journal:  J Clin Psychopharmacol       Date:  2011-06       Impact factor: 3.153

8.  Deficiencies in the reporting of VD and t(1/2) in the FDA approved chemotherapy drug inserts.

Authors:  Malcolm J D'Souza; Ghada J Alabed
Journal:  Pharm Rev       Date:  2010-02-03

9.  Extracting Relevant Information from FDA Drug Files to Create a Structurally Diverse Drug Database Using KnowItAll®

Authors:  Malcolm J D'Souza; Fumie Koyoshi
Journal:  Pharm Rev       Date:  2009-05-08

10.  Computational toxicology: realizing the promise of the toxicity testing in the 21st century.

Authors:  Ivan Rusyn; George P Daston
Journal:  Environ Health Perspect       Date:  2010-05-18       Impact factor: 9.031

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  5 in total

1.  Evolution of a Structure-Searchable Database into a Prototype for a High-Fidelity SmartPhone App for 62 Common Pesticides Used in Delaware.

Authors:  Malcolm J D'Souza; Benjamin Barile; Aaron F Givens
Journal:  ... Int Conf Ind Instrum Control       Date:  2015-05

2.  Undergraduate Research, Data-Science Courses, and Volunteer Projects, Inform and Accelerate Wesley College's Retention Among First- and Second- Year Students.

Authors:  Lily S Neff; Malcolm J D'Souza
Journal:  Proc Natl Conf Undergrad Res       Date:  2019

3.  Integrative Biological Chemistry Program Includes The Use Of Informatics Tools, GIS And SAS Software Applications.

Authors:  Malcolm J D'Souza; Richard J Kashmar; Kent Hurst; Frank Fiedler; Catherine E Gross; Jasbir K Deol; Alora Wilson
Journal:  Contemp Issues Educ Res (Littleton)       Date:  2015 Third Quarter

4.  Data-intensive Undergraduate Research Project Informs to Advance Healthcare Analytics.

Authors:  M J D'Souza; D Wentzien; R Bautista; J Santana; M Skivers; S Stotts; F Fiedler
Journal:  IEEE Signal Process Med Biol Symp       Date:  2019-01-17

5.  COVID-19 Impacts at a Small Mid-Atlantic Liberal-Arts College with Implications for STEM Education.

Authors:  Malcolm J D'Souza; Katelynn Fry; Lyndsey Koyanagi; Andrew Shepherd
Journal:  J Educ Elearn Res       Date:  2020-11-03
  5 in total

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