Literature DB >> 24478005

The Gene Balance Hypothesis: dosage effects in plants.

James A Birchler1, Reiner A Veitia.   

Abstract

The concept of genomic balance traces to the early days of genetics. In recent years, studies of gene expression have found parallels to the classical phenotypic studies in that aneuploid changes have greater effects than whole genome changes. This has an explanation in terms of potential stoichiometric imbalances of the gene products encoded in the aneuploid regions. Studies of transcriptional factor mutations indicated that they tend to be haplo-insufficient as heterozygotes. Molecular evolution studies found that genes encoding members of macromolecular complexes were preferentially retained following polyploidy and underrepresented in copy number variants. In this review chapter, we synthesize these observations under the rubric of the Gene Balance Hypothesis.

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Year:  2014        PMID: 24478005     DOI: 10.1007/978-1-62703-773-0_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  12 in total

1.  Balancing copy number in ribosomal DNA.

Authors:  John H Malone
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-17       Impact factor: 11.205

2.  A System for Dosage-Based Functional Genomics in Poplar.

Authors:  Isabelle M Henry; Matthew S Zinkgraf; Andrew T Groover; Luca Comai
Journal:  Plant Cell       Date:  2015-08-28       Impact factor: 11.277

3.  The origin of exon 3 skipping of paternal GLOBOSA pre-mRNA in some Nicotiana tabacum lines correlates with a point mutation of the very last nucleotide of the exon.

Authors:  Jaroslav Fulneček; Roman Matyášek
Journal:  Mol Genet Genomics       Date:  2015-11-25       Impact factor: 3.291

Review 4.  Dosage compensation of the sex chromosomes and autosomes.

Authors:  Christine M Disteche
Journal:  Semin Cell Dev Biol       Date:  2016-04-22       Impact factor: 7.727

5.  Transcriptional consequence and impaired gametogenesis with high-grade aneuploidy in Arabidopsis thaliana.

Authors:  Kuan-Lin Lo; Long-Chi Wang; I-Ju Chen; Yu-Chen Liu; Mei-Chu Chung; Wan-Sheng Lo
Journal:  PLoS One       Date:  2014-12-16       Impact factor: 3.240

6.  Gene-body CG methylation and divergent expression of duplicate genes in rice.

Authors:  Xutong Wang; Zhibin Zhang; Tiansi Fu; Lanjuan Hu; Chunming Xu; Lei Gong; Jonathan F Wendel; Bao Liu
Journal:  Sci Rep       Date:  2017-06-01       Impact factor: 4.379

7.  Factors Influencing Gene Family Size Variation Among Related Species in a Plant Family, Solanaceae.

Authors:  Peipei Wang; Bethany M Moore; Nicholas L Panchy; Fanrui Meng; Melissa D Lehti-Shiu; Shin-Han Shiu
Journal:  Genome Biol Evol       Date:  2018-10-01       Impact factor: 3.416

8.  Subfunctionalization of phytochrome B1/B2 leads to differential auxin and photosynthetic responses.

Authors:  Keisha D Carlson; Sneha Bhogale; Drew Anderson; Alondra Zaragoza-Mendoza; Andreas Madlung
Journal:  Plant Direct       Date:  2020-02-28

9.  The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns.

Authors:  Alexandre Hild Aono; Ricardo José Gonzaga Pimenta; Ana Letycia Basso Garcia; Fernando Henrique Correr; Guilherme Kenichi Hosaka; Marishani Marin Carrasco; Cláudio Benício Cardoso-Silva; Melina Cristina Mancini; Danilo Augusto Sforça; Lucas Borges Dos Santos; James Shiniti Nagai; Luciana Rossini Pinto; Marcos Guimarães de Andrade Landell; Monalisa Sampaio Carneiro; Thiago Willian Balsalobre; Marcos Gonçalves Quiles; Welison Andrade Pereira; Gabriel Rodrigues Alves Margarido; Anete Pereira de Souza
Journal:  Front Plant Sci       Date:  2021-07-07       Impact factor: 5.753

10.  Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived.

Authors:  Yue Hao; Jacob D Washburn; Jacob Rosenthal; Brandon Nielsen; Eric Lyons; Patrick P Edger; J Chris Pires; Gavin C Conant
Journal:  Genome Biol Evol       Date:  2018-03-01       Impact factor: 3.416

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