Literature DB >> 24469733

Proteolytic clipping of histone tails: the emerging role of histone proteases in regulation of various biological processes.

Gajendra Kumar Azad1, Raghuvir S Tomar.   

Abstract

Chromatin is a dynamic DNA scaffold structure that responds to a variety of external and internal stimuli to regulate the fundamental biological processes. Majority of the cases chromatin dynamicity is exhibited through chemical modifications and physical changes between DNA and histones. These modifications are reversible and complex signaling pathways involving chromatin-modifying enzymes regulate the fluidity of chromatin. Fluidity of chromatin can also be impacted through irreversible change, proteolytic processing of histones which is a poorly understood phenomenon. In recent studies, histone proteolysis has been implicated as a regulatory process involved in the permanent removal of epigenetic marks from histones. Activities responsible for clipping of histone tails and their significance in various biological processes have been observed in several organisms. Here, we have reviewed the properties of some of the known histone proteases, analyzed their significance in biological processes and have provided future directions.

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Year:  2014        PMID: 24469733     DOI: 10.1007/s11033-014-3181-y

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  91 in total

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Journal:  J Biol Chem       Date:  2001-07-02       Impact factor: 5.157

2.  Operating on chromatin, a colorful language where context matters.

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Journal:  J Mol Biol       Date:  2011-01-25       Impact factor: 5.469

Review 3.  Epigenetic modifications and human disease.

Authors:  Anna Portela; Manel Esteller
Journal:  Nat Biotechnol       Date:  2010-10       Impact factor: 54.908

4.  A milestone in the odyssey of higher-order chromatin structure.

Authors:  Christopher L Woodcock
Journal:  Nat Struct Mol Biol       Date:  2005-08       Impact factor: 15.369

Review 5.  How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers.

Authors:  Sean D Taverna; Haitao Li; Alexander J Ruthenburg; C David Allis; Dinshaw J Patel
Journal:  Nat Struct Mol Biol       Date:  2007-11-05       Impact factor: 15.369

6.  Histone H3 N-terminus regulates higher order structure of yeast heterochromatin.

Authors:  Adam S Sperling; Michael Grunstein
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-03       Impact factor: 11.205

7.  Involvement of a membrane-bound form of glutamate dehydrogenase in the association of lysosomes to microtubules.

Authors:  F Rajas; V Gire; B Rousset
Journal:  J Biol Chem       Date:  1996-11-22       Impact factor: 5.157

8.  Functional domains of chlamydial histone H1-like protein.

Authors:  M Remacha; R Kaul; R Sherburne; W M Wenman
Journal:  Biochem J       Date:  1996-04-15       Impact factor: 3.857

9.  Molecular cloning and expression of hctB encoding a strain-variant chlamydial histone-like protein with DNA-binding activity.

Authors:  T J Brickman; C E Barry; T Hackstadt
Journal:  J Bacteriol       Date:  1993-07       Impact factor: 3.490

10.  Detection of structural differences between nuclear and mitochondrial glutamate dehydrogenases by the use of immunoadsorbents.

Authors:  G di Prisco; L Casola
Journal:  Biochemistry       Date:  1975-10-21       Impact factor: 3.162

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  17 in total

1.  Analyses of Histone Proteoforms Using Front-end Electron Transfer Dissociation-enabled Orbitrap Instruments.

Authors:  Lissa C Anderson; Kelly R Karch; Scott A Ugrin; Mariel Coradin; A Michelle English; Simone Sidoli; Jeffrey Shabanowitz; Benjamin A Garcia; Donald F Hunt
Journal:  Mol Cell Proteomics       Date:  2016-01-19       Impact factor: 5.911

Review 2.  Influence of Arsenic on Global Levels of Histone Posttranslational Modifications: a Review of the Literature and Challenges in the Field.

Authors:  Caitlin G Howe; Mary V Gamble
Journal:  Curr Environ Health Rep       Date:  2016-09

Review 3.  Epigenetic control of gene regulation during development and disease: A view from the retina.

Authors:  Ximena Corso-Díaz; Catherine Jaeger; Vijender Chaitankar; Anand Swaroop
Journal:  Prog Retin Eye Res       Date:  2018-03-12       Impact factor: 21.198

4.  Top-down and Middle-down Protein Analysis Reveals that Intact and Clipped Human Histones Differ in Post-translational Modification Patterns.

Authors:  Andrey Tvardovskiy; Krzysztof Wrzesinski; Simone Sidoli; Stephen J Fey; Adelina Rogowska-Wrzesinska; Ole N Jensen
Journal:  Mol Cell Proteomics       Date:  2015-09-30       Impact factor: 5.911

Review 5.  Monitoring proteolytic processing events by quantitative mass spectrometry.

Authors:  Mariel Coradin; Kelly R Karch; Benjamin A Garcia
Journal:  Expert Rev Proteomics       Date:  2017-04-17       Impact factor: 3.940

6.  In vitro Histone H3 Cleavage Assay for Yeast and Chicken Liver H3 Protease.

Authors:  Sakshi Chauhan; Gajendra Kumar Azad; Raghuvir Singh Tomar
Journal:  Bio Protoc       Date:  2017-01-05

7.  MMP-2 is a novel histone H3 N-terminal protease necessary for myogenic gene activation.

Authors:  Judd C Rice; Benjamin H Weekley; Tomas Kanholm; Zhihui Chen; Sunyoung Lee; Daniel J Fernandez; Rachel Abrahamson; Alessandra Castaldi; Zea Borok; Brian D Dynlacht; Woojin An
Journal:  Epigenetics Chromatin       Date:  2021-05-17       Impact factor: 4.954

8.  Enzymatic cleavage of histone H3: a new consideration when measuring histone modifications in human samples.

Authors:  Caitlin G Howe; Mary V Gamble
Journal:  Clin Epigenetics       Date:  2015-01-22       Impact factor: 6.551

9.  Assessment of the biological pathways targeted by isocyanate using N-succinimidyl N-methylcarbamate in budding yeast Saccharomyces cerevisiae.

Authors:  Gajendra Kumar Azad; Vikash Singh; Raghuvir S Tomar
Journal:  PLoS One       Date:  2014-03-24       Impact factor: 3.240

10.  Quantitative proteomics to characterize specific histone H2A proteolysis in chronic lymphocytic leukemia and the myeloid THP-1 cell line.

Authors:  Pieter Glibert; Liesbeth Vossaert; Katleen Van Steendam; Stijn Lambrecht; Filip Van Nieuwerburgh; Fritz Offner; Thomas Kipps; Maarten Dhaenens; Dieter Deforce
Journal:  Int J Mol Sci       Date:  2014-05-27       Impact factor: 5.923

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