Literature DB >> 24457950

From label fusion to correspondence fusion: a new approach to unbiased groupwise registration.

Paul A Yushkevich1, Hongzhi Wang1, John Pluta1, Brian B Avants1.   

Abstract

Label fusion strategies are used in multi-atlas image segmentation approaches to compute a consensus segmentation of an image, given a set of candidate segmentations produced by registering the image to a set of atlases [19, 11, 8]. Effective label fusion strategies, such as local similarity-weighted voting [1, 13] substantially reduce segmentation errors compared to single-atlas segmentation. This paper extends the label fusion idea to the problem of finding correspondences across a set of images. Instead of computing a consensus segmentation, weighted voting is used to estimate a consensus coordinate map between a target image and a reference space. Two variants of the problem are considered: (1) where correspondences between a set of atlases are known and are propagated to the target image; (2) where correspondences are estimated across a set of images without prior knowledge. Evaluation in synthetic data shows that correspondences recovered by fusion methods are more accurate than those based on registration to a population template. In a 2D example in real MRI data, fusion methods result in more consistent mappings between manual segmentations of the hippocampus.

Entities:  

Year:  2012        PMID: 24457950      PMCID: PMC3896982          DOI: 10.1109/CVPR.2012.6247771

Source DB:  PubMed          Journal:  Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit        ISSN: 1063-6919


  16 in total

1.  Evaluation of atlas selection strategies for atlas-based image segmentation with application to confocal microscopy images of bee brains.

Authors:  Torsten Rohlfing; Robert Brandt; Randolf Menzel; Calvin R Maurer
Journal:  Neuroimage       Date:  2004-04       Impact factor: 6.556

2.  Geodesic estimation for large deformation anatomical shape averaging and interpolation.

Authors:  Brian Avants; James C Gee
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

3.  A unified information-theoretic approach to groupwise non-rigid registration and model building.

Authors:  Carole J Twining; Tim Cootes; Stephen Marsland; Vladimir Petrovic; Roy Schestowitz; Chris J Taylor
Journal:  Inf Process Med Imaging       Date:  2005

4.  Discovering modes of an image population through mixture modeling.

Authors:  Mert R Sabuncu; Serdar K Balci; Polina Golland
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

5.  Optimal weights for multi-atlas label fusion.

Authors:  Hongzhi Wang; Jung Wook Suh; John Pluta; Murat Altinay; Paul Yushkevich
Journal:  Inf Process Med Imaging       Date:  2011

6.  Unbiased diffeomorphic atlas construction for computational anatomy.

Authors:  S Joshi; Brad Davis; Matthieu Jomier; Guido Gerig
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

7.  Nearly automatic segmentation of hippocampal subfields in in vivo focal T2-weighted MRI.

Authors:  Paul A Yushkevich; Hongzhi Wang; John Pluta; Sandhitsu R Das; Caryne Craige; Brian B Avants; Michael W Weiner; Susanne Mueller
Journal:  Neuroimage       Date:  2010-06-30       Impact factor: 6.556

8.  Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain.

Authors:  B B Avants; C L Epstein; M Grossman; J C Gee
Journal:  Med Image Anal       Date:  2007-06-23       Impact factor: 8.545

9.  Groupwise registration based on hierarchical image clustering and atlas synthesis.

Authors:  Qian Wang; Liya Chen; Pew-Thian Yap; Guorong Wu; Dinggang Shen
Journal:  Hum Brain Mapp       Date:  2010-08       Impact factor: 5.038

10.  Automatic anatomical brain MRI segmentation combining label propagation and decision fusion.

Authors:  Rolf A Heckemann; Joseph V Hajnal; Paul Aljabar; Daniel Rueckert; Alexander Hammers
Journal:  Neuroimage       Date:  2006-07-24       Impact factor: 6.556

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  7 in total

1.  3D Deep Learning for Anatomical Structure Segmentation in Multiple Imaging Modalities.

Authors:  Barbara Villarini; Hykoush Asaturyan; Sila Kurugol; Onur Afacan; Jimmy D Bell; E Louise Thomas
Journal:  Proc IEEE Int Symp Comput Based Med Syst       Date:  2021-07-12

2.  Simultaneous tumor and surrogate motion tracking with dynamic MRI for radiation therapy planning.

Authors:  Seyoun Park; Rana Farah; Steven M Shea; Erik Tryggestad; Russell Hales; Junghoon Lee
Journal:  Phys Med Biol       Date:  2018-01-11       Impact factor: 3.609

3.  Three-dimensional mapping of neurofibrillary tangle burden in the human medial temporal lobe.

Authors:  Paul A Yushkevich; Mónica Muñoz López; María Mercedes Iñiguez de Onzoño Martin; Ranjit Ittyerah; Sydney Lim; Sadhana Ravikumar; Madigan L Bedard; Stephen Pickup; Weixia Liu; Jiancong Wang; Ling Yu Hung; Jade Lasserve; Nicolas Vergnet; Long Xie; Mengjin Dong; Salena Cui; Lauren McCollum; John L Robinson; Theresa Schuck; Robin de Flores; Murray Grossman; M Dylan Tisdall; Karthik Prabhakaran; Gabor Mizsei; Sandhitsu R Das; Emilio Artacho-Pérula; Marı'a Del Mar Arroyo Jiménez; Marı'a Pilar Marcos Raba; Francisco Javier Molina Romero; Sandra Cebada Sánchez; José Carlos Delgado González; Carlos de la Rosa-Prieto; Marta Córcoles Parada; Edward B Lee; John Q Trojanowski; Daniel T Ohm; Laura E M Wisse; David A Wolk; David J Irwin; Ricardo Insausti
Journal:  Brain       Date:  2021-10-22       Impact factor: 15.255

4.  Assessment of tumour viability in human lung cancer xenografts with texture-based image analysis.

Authors:  Riku Turkki; Nina Linder; Tanja Holopainen; Yinhai Wang; Anne Grote; Mikael Lundin; Kari Alitalo; Johan Lundin
Journal:  J Clin Pathol       Date:  2015-05-28       Impact factor: 3.411

5.  Manual-Protocol Inspired Technique for Improving Automated MR Image Segmentation during Label Fusion.

Authors:  Nikhil Bhagwat; Jon Pipitone; Julie L Winterburn; Ting Guo; Emma G Duerden; Aristotle N Voineskos; Martin Lepage; Steven P Miller; Jens C Pruessner; M Mallar Chakravarty
Journal:  Front Neurosci       Date:  2016-07-19       Impact factor: 4.677

6.  Preliminary analysis using multi-atlas labeling algorithms for tracing longitudinal change.

Authors:  Regina E Y Kim; Spencer Lourens; Jeffrey D Long; Jane S Paulsen; Hans J Johnson
Journal:  Front Neurosci       Date:  2015-07-14       Impact factor: 4.677

7.  Accurate nonlinear mapping between MNI volumetric and FreeSurfer surface coordinate systems.

Authors:  Jianxiao Wu; Gia H Ngo; Douglas Greve; Jingwei Li; Tong He; Bruce Fischl; Simon B Eickhoff; B T Thomas Yeo
Journal:  Hum Brain Mapp       Date:  2018-05-16       Impact factor: 5.038

  7 in total

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