Literature DB >> 24454266

(3aR,8bR)-3a,8b-Dihy-droxy-1-(4-meth-oxy-phen-yl)-2-methyl-sulfan-yl-3-nitro-1,8b-di-hydro-indeno-[1,2-b]pyrrol-4(3aH)-one.

R A Nagalakshmi1, J Suresh1, V Jeyachandran2, R Ranjith Kumar2, P L Nilantha Lakshman3.   

Abstract

In the title compound, C19H16N2O6S, the pyrrolidine ring adopts a twisted conformation with puckering parameters q 2 = 0.088 (3) Å and Φ2 = 61.5 (14)°. The cyclo-pentane ring adopts a twisted conformation with puckering parameters q 2 = 0.099 (2) Å and Φ2 = 242.8 (14)°. A weak intra-molecular O-H⋯O inter-action occurs. In the crystal, pairs of C-H⋯O inter-actions generate dimers with graph-set motif R 2 (2)(24) and they are interconnected by pairs of O-H⋯O hydrogen bonds, which link the mol-ecules into inversion dimers with graph-set motif R 2 (2)(10).

Entities:  

Year:  2013        PMID: 24454266      PMCID: PMC3885090          DOI: 10.1107/S1600536813031279

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the importance of pyrrolidine derivatives, see: Cordell (1981 ▶); Morais et al. (2009 ▶); Bello et al. (2010 ▶); Obniska et al. (2010 ▶). For related structures, see: Liu et al. (2008 ▶); Ghorbani (2012 ▶). For additional conformation analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C19H16N2O6S M = 400.40 Monoclinic, a = 13.6601 (7) Å b = 8.5782 (5) Å c = 15.2373 (8) Å β = 97.684 (3)° V = 1769.46 (17) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 293 K 0.21 × 0.19 × 0.18 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.967, T max = 0.974 13771 measured reflections 3311 independent reflections 2661 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.155 S = 1.02 3311 reflections 253 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.44 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813031279/zq2211sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813031279/zq2211Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813031279/zq2211Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H16N2O6SF(000) = 832
Mr = 400.40Dx = 1.503 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -p 2ynCell parameters from 2000 reflections
a = 13.6601 (7) Åθ = 2–31°
b = 8.5782 (5) ŵ = 0.23 mm1
c = 15.2373 (8) ÅT = 293 K
β = 97.684 (3)°Block, yellow
V = 1769.46 (17) Å30.21 × 0.19 × 0.18 mm
Z = 4
Bruker Kappa APEXII diffractometer3311 independent reflections
Radiation source: fine-focus sealed tube2661 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.047
Detector resolution: 0 pixels mm-1θmax = 25.5°, θmin = 1.9°
ω and φ scansh = −16→15
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −10→7
Tmin = 0.967, Tmax = 0.974l = −17→18
13771 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.155H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0989P)2 + 0.7209P] where P = (Fo2 + 2Fc2)/3
3311 reflections(Δ/σ)max < 0.001
253 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.44 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ (F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F.2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.70509 (13)0.0236 (3)0.42776 (14)0.0363 (5)
C20.82032 (13)0.0315 (3)0.43000 (14)0.0375 (5)
C30.82888 (14)0.0735 (3)0.33568 (15)0.0387 (5)
C40.73865 (14)0.0682 (2)0.28246 (14)0.0361 (5)
C50.60238 (18)0.0213 (4)0.12776 (17)0.0575 (7)
H5A0.59170.02970.06440.086*
H5B0.55510.08490.15250.086*
H5C0.5948−0.08540.14460.086*
C60.85309 (15)0.1658 (3)0.49362 (14)0.0407 (5)
C70.76369 (15)0.2479 (3)0.51268 (14)0.0410 (5)
C80.67980 (14)0.1644 (3)0.48003 (13)0.0389 (5)
C90.58736 (16)0.2127 (3)0.49893 (14)0.0468 (6)
H90.53070.15550.47970.056*
C100.58276 (19)0.3479 (3)0.54700 (16)0.0557 (7)
H100.52180.38260.55990.067*
C110.6668 (2)0.4338 (3)0.57670 (18)0.0609 (7)
H110.66110.52600.60770.073*
C120.75837 (19)0.3837 (3)0.56070 (16)0.0540 (6)
H120.81510.43950.58160.065*
C130.56455 (13)0.0879 (2)0.31000 (13)0.0337 (5)
C140.54498 (14)0.2415 (3)0.28747 (14)0.0393 (5)
H140.59670.30940.28130.047*
C150.44902 (14)0.2942 (3)0.27415 (15)0.0413 (5)
H150.43550.39660.25650.050*
C160.37246 (13)0.1939 (3)0.28725 (14)0.0367 (5)
C170.39162 (14)0.0406 (3)0.30889 (15)0.0400 (5)
H170.3400−0.02680.31640.048*
C180.48858 (14)−0.0138 (3)0.31960 (14)0.0377 (5)
H180.5020−0.11800.33310.045*
C190.20231 (15)0.1754 (3)0.30760 (19)0.0563 (7)
H19A0.14210.23400.29630.085*
H19B0.21810.15790.37010.085*
H19C0.19420.07710.27740.085*
N10.66559 (11)0.0372 (2)0.33164 (11)0.0349 (4)
N20.91927 (13)0.0968 (2)0.30602 (14)0.0452 (5)
O10.93701 (11)0.1960 (2)0.52411 (12)0.0554 (5)
O20.67032 (10)−0.11114 (19)0.46335 (10)0.0443 (4)
H20.6844−0.18680.43460.066*
O30.86160 (10)−0.11224 (19)0.45807 (11)0.0475 (4)
H30.9208−0.11190.45370.071*
O40.92122 (12)0.1327 (2)0.22720 (13)0.0597 (5)
O50.99515 (11)0.0817 (2)0.35945 (13)0.0621 (5)
O60.28043 (9)0.2606 (2)0.27626 (11)0.0473 (4)
S10.72558 (4)0.08679 (9)0.16864 (4)0.0526 (2)
U11U22U33U12U13U23
C10.0206 (9)0.0434 (13)0.0459 (11)0.0030 (8)0.0079 (8)0.0032 (9)
C20.0209 (9)0.0407 (12)0.0519 (12)0.0040 (8)0.0077 (8)−0.0005 (9)
C30.0242 (9)0.0430 (13)0.0514 (12)0.0010 (8)0.0143 (8)−0.0048 (9)
C40.0274 (9)0.0350 (11)0.0483 (11)0.0048 (8)0.0138 (8)0.0023 (9)
C50.0478 (13)0.0747 (19)0.0499 (13)0.0045 (12)0.0060 (10)−0.0085 (13)
C60.0293 (10)0.0464 (13)0.0466 (11)0.0039 (9)0.0056 (8)−0.0001 (10)
C70.0343 (10)0.0467 (13)0.0424 (11)0.0065 (9)0.0067 (8)0.0003 (9)
C80.0295 (10)0.0468 (13)0.0416 (10)0.0076 (8)0.0095 (8)0.0019 (9)
C90.0335 (10)0.0617 (16)0.0482 (12)0.0097 (10)0.0158 (9)0.0032 (11)
C100.0508 (14)0.0675 (18)0.0533 (13)0.0196 (12)0.0235 (11)−0.0003 (12)
C110.0675 (17)0.0617 (18)0.0571 (15)0.0136 (13)0.0216 (13)−0.0126 (13)
C120.0523 (14)0.0603 (17)0.0505 (13)0.0019 (11)0.0104 (11)−0.0109 (12)
C130.0189 (9)0.0404 (12)0.0426 (11)0.0019 (7)0.0074 (7)0.0010 (8)
C140.0219 (9)0.0413 (13)0.0568 (12)−0.0010 (8)0.0136 (8)0.0046 (10)
C150.0272 (10)0.0400 (13)0.0583 (13)0.0042 (8)0.0118 (9)0.0090 (10)
C160.0200 (9)0.0449 (13)0.0457 (11)0.0024 (8)0.0068 (7)−0.0011 (9)
C170.0218 (9)0.0444 (13)0.0547 (12)−0.0044 (8)0.0086 (8)0.0008 (10)
C180.0273 (9)0.0364 (12)0.0504 (12)0.0003 (8)0.0085 (8)0.0018 (9)
C190.0245 (10)0.0686 (17)0.0778 (17)0.0003 (10)0.0140 (10)0.0083 (14)
N10.0186 (7)0.0440 (11)0.0436 (9)0.0031 (6)0.0094 (6)0.0022 (8)
N20.0292 (9)0.0450 (12)0.0653 (13)−0.0016 (7)0.0203 (8)−0.0069 (9)
O10.0299 (8)0.0645 (12)0.0697 (11)0.0010 (7)−0.0008 (7)−0.0141 (9)
O20.0334 (8)0.0465 (10)0.0547 (9)0.0002 (6)0.0126 (6)0.0093 (7)
O30.0247 (7)0.0448 (10)0.0719 (11)0.0070 (6)0.0022 (7)0.0016 (8)
O40.0439 (9)0.0645 (12)0.0767 (12)−0.0021 (8)0.0300 (8)0.0084 (10)
O50.0217 (8)0.0881 (14)0.0779 (12)−0.0032 (7)0.0118 (8)−0.0144 (10)
O60.0194 (6)0.0518 (10)0.0723 (10)0.0048 (6)0.0117 (6)0.0072 (8)
S10.0402 (3)0.0725 (5)0.0474 (4)0.0029 (3)0.0146 (3)0.0101 (3)
C1—O21.387 (3)C11—C121.375 (4)
C1—N11.496 (3)C11—H110.9300
C1—C81.512 (3)C12—H120.9300
C1—C21.571 (2)C13—C141.378 (3)
C2—O31.399 (3)C13—C181.379 (3)
C2—C31.501 (3)C13—N11.443 (2)
C2—C61.533 (3)C14—C151.376 (3)
C3—C41.383 (3)C14—H140.9300
C3—N21.385 (3)C15—C161.389 (3)
C4—N11.352 (3)C15—H150.9300
C4—S11.727 (2)C16—O61.371 (2)
C5—S11.804 (3)C16—C171.372 (3)
C5—H5A0.9600C17—C181.393 (3)
C5—H5B0.9600C17—H170.9300
C5—H5C0.9600C18—H180.9300
C6—O11.206 (3)C19—O61.427 (3)
C6—C71.472 (3)C19—H19A0.9600
C7—C121.383 (3)C19—H19B0.9600
C7—C81.386 (3)C19—H19C0.9600
C8—C91.395 (3)N2—O51.236 (3)
C9—C101.378 (4)N2—O41.244 (3)
C9—H90.9300O2—H20.8200
C10—C111.388 (4)O3—H30.8200
C10—H100.9300
O2—C1—N1110.51 (17)C12—C11—H11119.7
O2—C1—C8110.19 (16)C10—C11—H11119.7
N1—C1—C8112.04 (17)C11—C12—C7118.1 (2)
O2—C1—C2114.95 (16)C11—C12—H12121.0
N1—C1—C2104.30 (15)C7—C12—H12121.0
C8—C1—C2104.65 (16)C14—C13—C18120.52 (18)
O3—C2—C3115.10 (17)C14—C13—N1119.52 (17)
O3—C2—C6113.41 (17)C18—C13—N1119.71 (19)
C3—C2—C6111.82 (18)C15—C14—C13120.01 (19)
O3—C2—C1109.29 (17)C15—C14—H14120.0
C3—C2—C1101.28 (15)C13—C14—H14120.0
C6—C2—C1104.66 (16)C14—C15—C16119.7 (2)
C4—C3—N2125.2 (2)C14—C15—H15120.1
C4—C3—C2112.11 (17)C16—C15—H15120.1
N2—C3—C2122.27 (18)O6—C16—C17124.89 (18)
N1—C4—C3110.34 (18)O6—C16—C15114.77 (19)
N1—C4—S1126.15 (16)C17—C16—C15120.34 (18)
C3—C4—S1123.39 (15)C16—C17—C18119.81 (19)
S1—C5—H5A109.5C16—C17—H17120.1
S1—C5—H5B109.5C18—C17—H17120.1
H5A—C5—H5B109.5C13—C18—C17119.5 (2)
S1—C5—H5C109.5C13—C18—H18120.2
H5A—C5—H5C109.5C17—C18—H18120.2
H5B—C5—H5C109.5O6—C19—H19A109.5
O1—C6—C7126.3 (2)O6—C19—H19B109.5
O1—C6—C2125.94 (19)H19A—C19—H19B109.5
C7—C6—C2107.72 (17)O6—C19—H19C109.5
C12—C7—C8121.7 (2)H19A—C19—H19C109.5
C12—C7—C6127.7 (2)H19B—C19—H19C109.5
C8—C7—C6110.5 (2)C4—N1—C13124.66 (17)
C7—C8—C9120.0 (2)C4—N1—C1111.19 (15)
C7—C8—C1111.45 (17)C13—N1—C1117.14 (15)
C9—C8—C1128.5 (2)O5—N2—O4122.52 (18)
C10—C9—C8117.8 (2)O5—N2—C3118.4 (2)
C10—C9—H9121.1O4—N2—C3119.08 (19)
C8—C9—H9121.1C1—O2—H2109.5
C9—C10—C11121.7 (2)C2—O3—H3109.5
C9—C10—H10119.1C16—O6—C19117.35 (18)
C11—C10—H10119.1C4—S1—C5106.52 (11)
C12—C11—C10120.6 (3)
O2—C1—C2—O37.7 (2)C7—C8—C9—C102.8 (3)
N1—C1—C2—O3−113.49 (18)C1—C8—C9—C10−178.9 (2)
C8—C1—C2—O3128.67 (18)C8—C9—C10—C11−0.5 (4)
O2—C1—C2—C3129.54 (19)C9—C10—C11—C12−1.6 (4)
N1—C1—C2—C38.4 (2)C10—C11—C12—C71.4 (4)
C8—C1—C2—C3−109.45 (18)C8—C7—C12—C110.9 (4)
O2—C1—C2—C6−114.1 (2)C6—C7—C12—C11−174.7 (2)
N1—C1—C2—C6124.73 (18)C18—C13—C14—C15−0.2 (3)
C8—C1—C2—C66.9 (2)N1—C13—C14—C15−174.4 (2)
O3—C2—C3—C4109.7 (2)C13—C14—C15—C162.8 (3)
C6—C2—C3—C4−119.03 (19)C14—C15—C16—O6177.0 (2)
C1—C2—C3—C4−8.1 (2)C14—C15—C16—C17−3.4 (3)
O3—C2—C3—N2−63.6 (3)O6—C16—C17—C18−179.1 (2)
C6—C2—C3—N267.7 (3)C15—C16—C17—C181.4 (3)
C1—C2—C3—N2178.6 (2)C14—C13—C18—C17−1.9 (3)
N2—C3—C4—N1177.5 (2)N1—C13—C18—C17172.37 (19)
C2—C3—C4—N14.4 (3)C16—C17—C18—C131.3 (3)
N2—C3—C4—S11.3 (3)C3—C4—N1—C13151.4 (2)
C2—C3—C4—S1−171.80 (15)S1—C4—N1—C13−32.5 (3)
O3—C2—C6—O149.2 (3)C3—C4—N1—C11.8 (2)
C3—C2—C6—O1−82.9 (3)S1—C4—N1—C1177.84 (15)
C1—C2—C6—O1168.3 (2)C14—C13—N1—C4−48.6 (3)
O3—C2—C6—C7−129.12 (18)C18—C13—N1—C4137.1 (2)
C3—C2—C6—C798.72 (19)C14—C13—N1—C199.4 (2)
C1—C2—C6—C7−10.1 (2)C18—C13—N1—C1−74.9 (3)
O1—C6—C7—C127.6 (4)O2—C1—N1—C4−130.78 (17)
C2—C6—C7—C12−174.1 (2)C8—C1—N1—C4105.92 (19)
O1—C6—C7—C8−168.5 (2)C2—C1—N1—C4−6.7 (2)
C2—C6—C7—C89.9 (3)O2—C1—N1—C1377.1 (2)
C12—C7—C8—C9−3.1 (3)C8—C1—N1—C13−46.2 (2)
C6—C7—C8—C9173.2 (2)C2—C1—N1—C13−158.86 (17)
C12—C7—C8—C1178.3 (2)C4—C3—N2—O5−172.1 (2)
C6—C7—C8—C1−5.3 (3)C2—C3—N2—O50.3 (3)
O2—C1—C8—C7122.85 (19)C4—C3—N2—O48.2 (3)
N1—C1—C8—C7−113.67 (19)C2—C3—N2—O4−179.4 (2)
C2—C1—C8—C7−1.3 (2)C17—C16—O6—C1914.1 (3)
O2—C1—C8—C9−55.6 (3)C15—C16—O6—C19−166.3 (2)
N1—C1—C8—C967.9 (3)N1—C4—S1—C5−10.5 (2)
C2—C1—C8—C9−179.7 (2)C3—C4—S1—C5165.1 (2)
D—H···AD—HH···AD···AD—H···A
O3—H3···O50.822.503.014 (3)122
O3—H3···O1i0.822.062.821 (2)155
C11—H11···O6ii0.932.603.461 (3)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3⋯O50.822.503.014 (3)122
O3—H3⋯O1i 0.822.062.821 (2)155
C11—H11⋯O6ii 0.932.603.461 (3)155

Symmetry codes: (i) ; (ii) .

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4.  Synthesis and anticonvulsant properties of new Mannich bases derived from 3-aryl-pyrrolidine-2,5-diones. Part 1.

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5.  2-(4-Methoxy-phen-yl)-1H-indene.

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6.  2-Methyl-sulfan-yl-1H-perimidin-3-ium iodide.

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7.  Structure validation in chemical crystallography.

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1.  (3aR*,8bR*)-3a,8b-Dihy-droxy-1-(4-methyl-phen-yl)-2-methyl-sulfanyl-3-nitro-1,8b-di-hydro-indeno-[1,2-b]pyrrol-4(3aH)-one.

Authors:  R A Nagalakshmi; J Suresh; R Ranjith Kumar; V Jeyachandran; P L Nilantha Lakshman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-12
  1 in total

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