| Literature DB >> 24454266 |
R A Nagalakshmi1, J Suresh1, V Jeyachandran2, R Ranjith Kumar2, P L Nilantha Lakshman3.
Abstract
In the title compound, C19H16N2O6S, the pyrrolidine ring adopts a twisted conformation with puckering parameters q 2 = 0.088 (3) Å and Φ2 = 61.5 (14)°. The cyclo-pentane ring adopts a twisted conformation with puckering parameters q 2 = 0.099 (2) Å and Φ2 = 242.8 (14)°. A weak intra-molecular O-H⋯O inter-action occurs. In the crystal, pairs of C-H⋯O inter-actions generate dimers with graph-set motif R 2 (2)(24) and they are interconnected by pairs of O-H⋯O hydrogen bonds, which link the mol-ecules into inversion dimers with graph-set motif R 2 (2)(10).Entities:
Year: 2013 PMID: 24454266 PMCID: PMC3885090 DOI: 10.1107/S1600536813031279
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C19H16N2O6S | |
| Monoclinic, | Mo |
| Hall symbol: -p 2yn | Cell parameters from 2000 reflections |
| θ = 2–31° | |
| µ = 0.23 mm−1 | |
| β = 97.684 (3)° | Block, yellow |
| 0.21 × 0.19 × 0.18 mm | |
| Bruker Kappa APEXII diffractometer | 3311 independent reflections |
| Radiation source: fine-focus sealed tube | 2661 reflections with |
| Graphite monochromator | |
| Detector resolution: 0 pixels mm-1 | θmax = 25.5°, θmin = 1.9° |
| ω and φ scans | |
| Absorption correction: multi-scan ( | |
| 13771 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3311 reflections | (Δ/σ)max < 0.001 |
| 253 parameters | Δρmax = 0.42 e Å−3 |
| 0 restraints | Δρmin = −0.44 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.70509 (13) | 0.0236 (3) | 0.42776 (14) | 0.0363 (5) | |
| C2 | 0.82032 (13) | 0.0315 (3) | 0.43000 (14) | 0.0375 (5) | |
| C3 | 0.82888 (14) | 0.0735 (3) | 0.33568 (15) | 0.0387 (5) | |
| C4 | 0.73865 (14) | 0.0682 (2) | 0.28246 (14) | 0.0361 (5) | |
| C5 | 0.60238 (18) | 0.0213 (4) | 0.12776 (17) | 0.0575 (7) | |
| H5A | 0.5917 | 0.0297 | 0.0644 | 0.086* | |
| H5B | 0.5551 | 0.0849 | 0.1525 | 0.086* | |
| H5C | 0.5948 | −0.0854 | 0.1446 | 0.086* | |
| C6 | 0.85309 (15) | 0.1658 (3) | 0.49362 (14) | 0.0407 (5) | |
| C7 | 0.76369 (15) | 0.2479 (3) | 0.51268 (14) | 0.0410 (5) | |
| C8 | 0.67980 (14) | 0.1644 (3) | 0.48003 (13) | 0.0389 (5) | |
| C9 | 0.58736 (16) | 0.2127 (3) | 0.49893 (14) | 0.0468 (6) | |
| H9 | 0.5307 | 0.1555 | 0.4797 | 0.056* | |
| C10 | 0.58276 (19) | 0.3479 (3) | 0.54700 (16) | 0.0557 (7) | |
| H10 | 0.5218 | 0.3826 | 0.5599 | 0.067* | |
| C11 | 0.6668 (2) | 0.4338 (3) | 0.57670 (18) | 0.0609 (7) | |
| H11 | 0.6611 | 0.5260 | 0.6077 | 0.073* | |
| C12 | 0.75837 (19) | 0.3837 (3) | 0.56070 (16) | 0.0540 (6) | |
| H12 | 0.8151 | 0.4395 | 0.5816 | 0.065* | |
| C13 | 0.56455 (13) | 0.0879 (2) | 0.31000 (13) | 0.0337 (5) | |
| C14 | 0.54498 (14) | 0.2415 (3) | 0.28747 (14) | 0.0393 (5) | |
| H14 | 0.5967 | 0.3094 | 0.2813 | 0.047* | |
| C15 | 0.44902 (14) | 0.2942 (3) | 0.27415 (15) | 0.0413 (5) | |
| H15 | 0.4355 | 0.3966 | 0.2565 | 0.050* | |
| C16 | 0.37246 (13) | 0.1939 (3) | 0.28725 (14) | 0.0367 (5) | |
| C17 | 0.39162 (14) | 0.0406 (3) | 0.30889 (15) | 0.0400 (5) | |
| H17 | 0.3400 | −0.0268 | 0.3164 | 0.048* | |
| C18 | 0.48858 (14) | −0.0138 (3) | 0.31960 (14) | 0.0377 (5) | |
| H18 | 0.5020 | −0.1180 | 0.3331 | 0.045* | |
| C19 | 0.20231 (15) | 0.1754 (3) | 0.30760 (19) | 0.0563 (7) | |
| H19A | 0.1421 | 0.2340 | 0.2963 | 0.085* | |
| H19B | 0.2181 | 0.1579 | 0.3701 | 0.085* | |
| H19C | 0.1942 | 0.0771 | 0.2774 | 0.085* | |
| N1 | 0.66559 (11) | 0.0372 (2) | 0.33164 (11) | 0.0349 (4) | |
| N2 | 0.91927 (13) | 0.0968 (2) | 0.30602 (14) | 0.0452 (5) | |
| O1 | 0.93701 (11) | 0.1960 (2) | 0.52411 (12) | 0.0554 (5) | |
| O2 | 0.67032 (10) | −0.11114 (19) | 0.46335 (10) | 0.0443 (4) | |
| H2 | 0.6844 | −0.1868 | 0.4346 | 0.066* | |
| O3 | 0.86160 (10) | −0.11224 (19) | 0.45807 (11) | 0.0475 (4) | |
| H3 | 0.9208 | −0.1119 | 0.4537 | 0.071* | |
| O4 | 0.92122 (12) | 0.1327 (2) | 0.22720 (13) | 0.0597 (5) | |
| O5 | 0.99515 (11) | 0.0817 (2) | 0.35945 (13) | 0.0621 (5) | |
| O6 | 0.28043 (9) | 0.2606 (2) | 0.27626 (11) | 0.0473 (4) | |
| S1 | 0.72558 (4) | 0.08679 (9) | 0.16864 (4) | 0.0526 (2) |
| C1 | 0.0206 (9) | 0.0434 (13) | 0.0459 (11) | 0.0030 (8) | 0.0079 (8) | 0.0032 (9) |
| C2 | 0.0209 (9) | 0.0407 (12) | 0.0519 (12) | 0.0040 (8) | 0.0077 (8) | −0.0005 (9) |
| C3 | 0.0242 (9) | 0.0430 (13) | 0.0514 (12) | 0.0010 (8) | 0.0143 (8) | −0.0048 (9) |
| C4 | 0.0274 (9) | 0.0350 (11) | 0.0483 (11) | 0.0048 (8) | 0.0138 (8) | 0.0023 (9) |
| C5 | 0.0478 (13) | 0.0747 (19) | 0.0499 (13) | 0.0045 (12) | 0.0060 (10) | −0.0085 (13) |
| C6 | 0.0293 (10) | 0.0464 (13) | 0.0466 (11) | 0.0039 (9) | 0.0056 (8) | −0.0001 (10) |
| C7 | 0.0343 (10) | 0.0467 (13) | 0.0424 (11) | 0.0065 (9) | 0.0067 (8) | 0.0003 (9) |
| C8 | 0.0295 (10) | 0.0468 (13) | 0.0416 (10) | 0.0076 (8) | 0.0095 (8) | 0.0019 (9) |
| C9 | 0.0335 (10) | 0.0617 (16) | 0.0482 (12) | 0.0097 (10) | 0.0158 (9) | 0.0032 (11) |
| C10 | 0.0508 (14) | 0.0675 (18) | 0.0533 (13) | 0.0196 (12) | 0.0235 (11) | −0.0003 (12) |
| C11 | 0.0675 (17) | 0.0617 (18) | 0.0571 (15) | 0.0136 (13) | 0.0216 (13) | −0.0126 (13) |
| C12 | 0.0523 (14) | 0.0603 (17) | 0.0505 (13) | 0.0019 (11) | 0.0104 (11) | −0.0109 (12) |
| C13 | 0.0189 (9) | 0.0404 (12) | 0.0426 (11) | 0.0019 (7) | 0.0074 (7) | 0.0010 (8) |
| C14 | 0.0219 (9) | 0.0413 (13) | 0.0568 (12) | −0.0010 (8) | 0.0136 (8) | 0.0046 (10) |
| C15 | 0.0272 (10) | 0.0400 (13) | 0.0583 (13) | 0.0042 (8) | 0.0118 (9) | 0.0090 (10) |
| C16 | 0.0200 (9) | 0.0449 (13) | 0.0457 (11) | 0.0024 (8) | 0.0068 (7) | −0.0011 (9) |
| C17 | 0.0218 (9) | 0.0444 (13) | 0.0547 (12) | −0.0044 (8) | 0.0086 (8) | 0.0008 (10) |
| C18 | 0.0273 (9) | 0.0364 (12) | 0.0504 (12) | 0.0003 (8) | 0.0085 (8) | 0.0018 (9) |
| C19 | 0.0245 (10) | 0.0686 (17) | 0.0778 (17) | 0.0003 (10) | 0.0140 (10) | 0.0083 (14) |
| N1 | 0.0186 (7) | 0.0440 (11) | 0.0436 (9) | 0.0031 (6) | 0.0094 (6) | 0.0022 (8) |
| N2 | 0.0292 (9) | 0.0450 (12) | 0.0653 (13) | −0.0016 (7) | 0.0203 (8) | −0.0069 (9) |
| O1 | 0.0299 (8) | 0.0645 (12) | 0.0697 (11) | 0.0010 (7) | −0.0008 (7) | −0.0141 (9) |
| O2 | 0.0334 (8) | 0.0465 (10) | 0.0547 (9) | 0.0002 (6) | 0.0126 (6) | 0.0093 (7) |
| O3 | 0.0247 (7) | 0.0448 (10) | 0.0719 (11) | 0.0070 (6) | 0.0022 (7) | 0.0016 (8) |
| O4 | 0.0439 (9) | 0.0645 (12) | 0.0767 (12) | −0.0021 (8) | 0.0300 (8) | 0.0084 (10) |
| O5 | 0.0217 (8) | 0.0881 (14) | 0.0779 (12) | −0.0032 (7) | 0.0118 (8) | −0.0144 (10) |
| O6 | 0.0194 (6) | 0.0518 (10) | 0.0723 (10) | 0.0048 (6) | 0.0117 (6) | 0.0072 (8) |
| S1 | 0.0402 (3) | 0.0725 (5) | 0.0474 (4) | 0.0029 (3) | 0.0146 (3) | 0.0101 (3) |
| C1—O2 | 1.387 (3) | C11—C12 | 1.375 (4) |
| C1—N1 | 1.496 (3) | C11—H11 | 0.9300 |
| C1—C8 | 1.512 (3) | C12—H12 | 0.9300 |
| C1—C2 | 1.571 (2) | C13—C14 | 1.378 (3) |
| C2—O3 | 1.399 (3) | C13—C18 | 1.379 (3) |
| C2—C3 | 1.501 (3) | C13—N1 | 1.443 (2) |
| C2—C6 | 1.533 (3) | C14—C15 | 1.376 (3) |
| C3—C4 | 1.383 (3) | C14—H14 | 0.9300 |
| C3—N2 | 1.385 (3) | C15—C16 | 1.389 (3) |
| C4—N1 | 1.352 (3) | C15—H15 | 0.9300 |
| C4—S1 | 1.727 (2) | C16—O6 | 1.371 (2) |
| C5—S1 | 1.804 (3) | C16—C17 | 1.372 (3) |
| C5—H5A | 0.9600 | C17—C18 | 1.393 (3) |
| C5—H5B | 0.9600 | C17—H17 | 0.9300 |
| C5—H5C | 0.9600 | C18—H18 | 0.9300 |
| C6—O1 | 1.206 (3) | C19—O6 | 1.427 (3) |
| C6—C7 | 1.472 (3) | C19—H19A | 0.9600 |
| C7—C12 | 1.383 (3) | C19—H19B | 0.9600 |
| C7—C8 | 1.386 (3) | C19—H19C | 0.9600 |
| C8—C9 | 1.395 (3) | N2—O5 | 1.236 (3) |
| C9—C10 | 1.378 (4) | N2—O4 | 1.244 (3) |
| C9—H9 | 0.9300 | O2—H2 | 0.8200 |
| C10—C11 | 1.388 (4) | O3—H3 | 0.8200 |
| C10—H10 | 0.9300 | ||
| O2—C1—N1 | 110.51 (17) | C12—C11—H11 | 119.7 |
| O2—C1—C8 | 110.19 (16) | C10—C11—H11 | 119.7 |
| N1—C1—C8 | 112.04 (17) | C11—C12—C7 | 118.1 (2) |
| O2—C1—C2 | 114.95 (16) | C11—C12—H12 | 121.0 |
| N1—C1—C2 | 104.30 (15) | C7—C12—H12 | 121.0 |
| C8—C1—C2 | 104.65 (16) | C14—C13—C18 | 120.52 (18) |
| O3—C2—C3 | 115.10 (17) | C14—C13—N1 | 119.52 (17) |
| O3—C2—C6 | 113.41 (17) | C18—C13—N1 | 119.71 (19) |
| C3—C2—C6 | 111.82 (18) | C15—C14—C13 | 120.01 (19) |
| O3—C2—C1 | 109.29 (17) | C15—C14—H14 | 120.0 |
| C3—C2—C1 | 101.28 (15) | C13—C14—H14 | 120.0 |
| C6—C2—C1 | 104.66 (16) | C14—C15—C16 | 119.7 (2) |
| C4—C3—N2 | 125.2 (2) | C14—C15—H15 | 120.1 |
| C4—C3—C2 | 112.11 (17) | C16—C15—H15 | 120.1 |
| N2—C3—C2 | 122.27 (18) | O6—C16—C17 | 124.89 (18) |
| N1—C4—C3 | 110.34 (18) | O6—C16—C15 | 114.77 (19) |
| N1—C4—S1 | 126.15 (16) | C17—C16—C15 | 120.34 (18) |
| C3—C4—S1 | 123.39 (15) | C16—C17—C18 | 119.81 (19) |
| S1—C5—H5A | 109.5 | C16—C17—H17 | 120.1 |
| S1—C5—H5B | 109.5 | C18—C17—H17 | 120.1 |
| H5A—C5—H5B | 109.5 | C13—C18—C17 | 119.5 (2) |
| S1—C5—H5C | 109.5 | C13—C18—H18 | 120.2 |
| H5A—C5—H5C | 109.5 | C17—C18—H18 | 120.2 |
| H5B—C5—H5C | 109.5 | O6—C19—H19A | 109.5 |
| O1—C6—C7 | 126.3 (2) | O6—C19—H19B | 109.5 |
| O1—C6—C2 | 125.94 (19) | H19A—C19—H19B | 109.5 |
| C7—C6—C2 | 107.72 (17) | O6—C19—H19C | 109.5 |
| C12—C7—C8 | 121.7 (2) | H19A—C19—H19C | 109.5 |
| C12—C7—C6 | 127.7 (2) | H19B—C19—H19C | 109.5 |
| C8—C7—C6 | 110.5 (2) | C4—N1—C13 | 124.66 (17) |
| C7—C8—C9 | 120.0 (2) | C4—N1—C1 | 111.19 (15) |
| C7—C8—C1 | 111.45 (17) | C13—N1—C1 | 117.14 (15) |
| C9—C8—C1 | 128.5 (2) | O5—N2—O4 | 122.52 (18) |
| C10—C9—C8 | 117.8 (2) | O5—N2—C3 | 118.4 (2) |
| C10—C9—H9 | 121.1 | O4—N2—C3 | 119.08 (19) |
| C8—C9—H9 | 121.1 | C1—O2—H2 | 109.5 |
| C9—C10—C11 | 121.7 (2) | C2—O3—H3 | 109.5 |
| C9—C10—H10 | 119.1 | C16—O6—C19 | 117.35 (18) |
| C11—C10—H10 | 119.1 | C4—S1—C5 | 106.52 (11) |
| C12—C11—C10 | 120.6 (3) | ||
| O2—C1—C2—O3 | 7.7 (2) | C7—C8—C9—C10 | 2.8 (3) |
| N1—C1—C2—O3 | −113.49 (18) | C1—C8—C9—C10 | −178.9 (2) |
| C8—C1—C2—O3 | 128.67 (18) | C8—C9—C10—C11 | −0.5 (4) |
| O2—C1—C2—C3 | 129.54 (19) | C9—C10—C11—C12 | −1.6 (4) |
| N1—C1—C2—C3 | 8.4 (2) | C10—C11—C12—C7 | 1.4 (4) |
| C8—C1—C2—C3 | −109.45 (18) | C8—C7—C12—C11 | 0.9 (4) |
| O2—C1—C2—C6 | −114.1 (2) | C6—C7—C12—C11 | −174.7 (2) |
| N1—C1—C2—C6 | 124.73 (18) | C18—C13—C14—C15 | −0.2 (3) |
| C8—C1—C2—C6 | 6.9 (2) | N1—C13—C14—C15 | −174.4 (2) |
| O3—C2—C3—C4 | 109.7 (2) | C13—C14—C15—C16 | 2.8 (3) |
| C6—C2—C3—C4 | −119.03 (19) | C14—C15—C16—O6 | 177.0 (2) |
| C1—C2—C3—C4 | −8.1 (2) | C14—C15—C16—C17 | −3.4 (3) |
| O3—C2—C3—N2 | −63.6 (3) | O6—C16—C17—C18 | −179.1 (2) |
| C6—C2—C3—N2 | 67.7 (3) | C15—C16—C17—C18 | 1.4 (3) |
| C1—C2—C3—N2 | 178.6 (2) | C14—C13—C18—C17 | −1.9 (3) |
| N2—C3—C4—N1 | 177.5 (2) | N1—C13—C18—C17 | 172.37 (19) |
| C2—C3—C4—N1 | 4.4 (3) | C16—C17—C18—C13 | 1.3 (3) |
| N2—C3—C4—S1 | 1.3 (3) | C3—C4—N1—C13 | 151.4 (2) |
| C2—C3—C4—S1 | −171.80 (15) | S1—C4—N1—C13 | −32.5 (3) |
| O3—C2—C6—O1 | 49.2 (3) | C3—C4—N1—C1 | 1.8 (2) |
| C3—C2—C6—O1 | −82.9 (3) | S1—C4—N1—C1 | 177.84 (15) |
| C1—C2—C6—O1 | 168.3 (2) | C14—C13—N1—C4 | −48.6 (3) |
| O3—C2—C6—C7 | −129.12 (18) | C18—C13—N1—C4 | 137.1 (2) |
| C3—C2—C6—C7 | 98.72 (19) | C14—C13—N1—C1 | 99.4 (2) |
| C1—C2—C6—C7 | −10.1 (2) | C18—C13—N1—C1 | −74.9 (3) |
| O1—C6—C7—C12 | 7.6 (4) | O2—C1—N1—C4 | −130.78 (17) |
| C2—C6—C7—C12 | −174.1 (2) | C8—C1—N1—C4 | 105.92 (19) |
| O1—C6—C7—C8 | −168.5 (2) | C2—C1—N1—C4 | −6.7 (2) |
| C2—C6—C7—C8 | 9.9 (3) | O2—C1—N1—C13 | 77.1 (2) |
| C12—C7—C8—C9 | −3.1 (3) | C8—C1—N1—C13 | −46.2 (2) |
| C6—C7—C8—C9 | 173.2 (2) | C2—C1—N1—C13 | −158.86 (17) |
| C12—C7—C8—C1 | 178.3 (2) | C4—C3—N2—O5 | −172.1 (2) |
| C6—C7—C8—C1 | −5.3 (3) | C2—C3—N2—O5 | 0.3 (3) |
| O2—C1—C8—C7 | 122.85 (19) | C4—C3—N2—O4 | 8.2 (3) |
| N1—C1—C8—C7 | −113.67 (19) | C2—C3—N2—O4 | −179.4 (2) |
| C2—C1—C8—C7 | −1.3 (2) | C17—C16—O6—C19 | 14.1 (3) |
| O2—C1—C8—C9 | −55.6 (3) | C15—C16—O6—C19 | −166.3 (2) |
| N1—C1—C8—C9 | 67.9 (3) | N1—C4—S1—C5 | −10.5 (2) |
| C2—C1—C8—C9 | −179.7 (2) | C3—C4—S1—C5 | 165.1 (2) |
| H··· | ||||
| O3—H3···O5 | 0.82 | 2.50 | 3.014 (3) | 122 |
| O3—H3···O1i | 0.82 | 2.06 | 2.821 (2) | 155 |
| C11—H11···O6ii | 0.93 | 2.60 | 3.461 (3) | 155 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H3⋯O5 | 0.82 | 2.50 | 3.014 (3) | 122 |
| O3—H3⋯O1i | 0.82 | 2.06 | 2.821 (2) | 155 |
| C11—H11⋯O6ii | 0.93 | 2.60 | 3.461 (3) | 155 |
Symmetry codes: (i) ; (ii) .