| Literature DB >> 24454258 |
Lin Tang1, Yue Zhang1, Yonghong Wen1.
Abstract
In the title hydrate, C17H13N3O·H2O, the dihedral angle between the quinoline and benzimidazole ring systems is 6.22 (7)°. The water mol-ecule is linked to the main mol-ecule by N-H⋯O and O-H⋯N hydrogen bonds. Further O-H⋯N hydrogen bonds link the organic molecules into C(6) chains running parallel to the b axis.Entities:
Year: 2013 PMID: 24454258 PMCID: PMC3885082 DOI: 10.1107/S1600536813031322
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C17H13N3O·H2O | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 3957 reflections |
| θ = 3.0–27.9° | |
| µ = 0.09 mm−1 | |
| Plate, colourless | |
| 0.12 × 0.10 × 0.06 mm |
| Bruker SMART CCD area-detector diffractometer | 1947 independent reflections |
| Radiation source: fine-focus sealed tube | 1808 reflections with |
| Graphite monochromator | |
| phi and ω scans | θmax = 27.9°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 10881 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1947 reflections | (Δ/σ)max = 0.013 |
| 207 parameters | Δρmax = 0.20 e Å−3 |
| 18 restraints | Δρmin = −0.22 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.70538 (9) | 0.86768 (5) | 0.14109 (3) | 0.01892 (14) | |
| N1 | 0.82709 (12) | 1.03042 (6) | 0.05135 (3) | 0.01977 (14) | |
| N2 | 0.34077 (11) | 0.92882 (6) | 0.20550 (3) | 0.01772 (16) | |
| H2A | 0.3746 | 0.9764 | 0.1740 | 0.021* | |
| N3 | 0.36377 (12) | 0.77363 (6) | 0.27537 (3) | 0.01932 (14) | |
| C1 | 0.88756 (16) | 1.10840 (7) | 0.00577 (4) | 0.0235 (2) | |
| H1B | 0.7980 | 1.1743 | −0.0021 | 0.028* | |
| C2 | 1.07849 (16) | 1.09794 (8) | −0.03150 (4) | 0.0242 (2) | |
| H2B | 1.1122 | 1.1549 | −0.0632 | 0.029* | |
| C3 | 1.21293 (15) | 1.00257 (8) | −0.02022 (4) | 0.0235 (2) | |
| H3B | 1.3415 | 0.9949 | −0.0436 | 0.028* | |
| C4 | 1.15598 (14) | 0.91521 (7) | 0.02721 (4) | 0.01900 (19) | |
| C5 | 1.28526 (14) | 0.81205 (8) | 0.03975 (4) | 0.0201 (2) | |
| H5A | 1.4166 | 0.8017 | 0.0182 | 0.024* | |
| C6 | 1.21598 (14) | 0.72833 (7) | 0.08357 (4) | 0.0197 (2) | |
| H6A | 1.2990 | 0.6596 | 0.0907 | 0.024* | |
| C7 | 1.01976 (13) | 0.74376 (7) | 0.11856 (4) | 0.01837 (19) | |
| H7A | 0.9755 | 0.6855 | 0.1484 | 0.022* | |
| C8 | 0.89491 (13) | 0.84444 (7) | 0.10856 (4) | 0.01745 (19) | |
| C9 | 0.95816 (14) | 0.93301 (7) | 0.06158 (4) | 0.01845 (15) | |
| C10 | 0.65019 (14) | 0.78507 (7) | 0.19152 (4) | 0.01846 (19) | |
| H10A | 0.7684 | 0.7789 | 0.2225 | 0.022* | |
| H10B | 0.6240 | 0.7058 | 0.1732 | 0.022* | |
| C11 | 0.45163 (14) | 0.82967 (7) | 0.22478 (4) | 0.01850 (15) | |
| C12 | 0.16288 (13) | 0.93884 (7) | 0.24609 (4) | 0.01765 (19) | |
| C13 | −0.01106 (15) | 1.01856 (7) | 0.24679 (4) | 0.0214 (2) | |
| H13A | −0.0209 | 1.0820 | 0.2173 | 0.026* | |
| C14 | −0.16961 (15) | 0.99854 (7) | 0.29382 (4) | 0.0239 (2) | |
| H14A | −0.2892 | 1.0495 | 0.2956 | 0.029* | |
| C15 | −0.15352 (15) | 0.90322 (8) | 0.33867 (4) | 0.0249 (2) | |
| H15A | −0.2616 | 0.8931 | 0.3698 | 0.030* | |
| C16 | 0.02011 (15) | 0.82397 (8) | 0.33743 (4) | 0.0223 (2) | |
| H16A | 0.0301 | 0.7611 | 0.3673 | 0.027* | |
| C17 | 0.17982 (14) | 0.84134 (7) | 0.28990 (4) | 0.01820 (19) | |
| O2 | 0.45798 (10) | 1.11879 (5) | 0.12375 (3) | 0.02338 (15) | |
| H2WA | 0.5052 (13) | 1.1686 (4) | 0.1525 (2) | 0.053 (3)* | |
| H2WB | 0.5604 (8) | 1.0836 (5) | 0.1021 (3) | 0.047 (3)* |
| O1 | 0.0167 (3) | 0.0218 (3) | 0.0183 (2) | 0.0025 (2) | 0.0034 (2) | 0.0034 (2) |
| N1 | 0.0224 (3) | 0.0198 (2) | 0.0171 (2) | 0.0001 (2) | 0.0005 (2) | −0.0011 (2) |
| N2 | 0.0172 (3) | 0.0179 (3) | 0.0180 (3) | −0.0017 (3) | 0.0009 (3) | 0.0006 (3) |
| N3 | 0.0177 (3) | 0.0228 (2) | 0.0175 (2) | −0.0019 (2) | 0.0002 (2) | 0.0011 (2) |
| C1 | 0.0309 (5) | 0.0189 (3) | 0.0207 (4) | 0.0007 (4) | −0.0001 (4) | 0.0000 (3) |
| C2 | 0.0298 (5) | 0.0236 (4) | 0.0192 (4) | −0.0066 (4) | 0.0023 (3) | 0.0007 (3) |
| C3 | 0.0238 (4) | 0.0275 (4) | 0.0191 (4) | −0.0059 (4) | 0.0020 (4) | −0.0018 (3) |
| C4 | 0.0182 (4) | 0.0230 (4) | 0.0159 (3) | −0.0042 (4) | −0.0020 (3) | −0.0037 (3) |
| C5 | 0.0140 (4) | 0.0289 (4) | 0.0175 (3) | −0.0006 (4) | 0.0003 (3) | −0.0048 (3) |
| C6 | 0.0179 (4) | 0.0228 (4) | 0.0184 (4) | 0.0035 (4) | −0.0024 (3) | −0.0025 (3) |
| C7 | 0.0173 (4) | 0.0208 (3) | 0.0169 (3) | −0.0005 (3) | −0.0018 (3) | −0.0001 (3) |
| C8 | 0.0159 (4) | 0.0210 (3) | 0.0154 (3) | −0.0013 (3) | −0.0006 (3) | −0.0028 (3) |
| C9 | 0.0202 (3) | 0.0185 (2) | 0.0167 (3) | −0.0009 (2) | −0.0010 (3) | −0.0021 (2) |
| C10 | 0.0180 (4) | 0.0189 (3) | 0.0184 (3) | −0.0028 (4) | 0.0023 (3) | 0.0019 (3) |
| C11 | 0.0174 (3) | 0.0211 (3) | 0.0170 (3) | −0.0024 (3) | −0.0014 (2) | 0.0000 (2) |
| C12 | 0.0164 (4) | 0.0198 (3) | 0.0168 (3) | −0.0039 (3) | 0.0003 (3) | −0.0042 (3) |
| C13 | 0.0221 (4) | 0.0188 (3) | 0.0234 (4) | −0.0007 (4) | −0.0013 (3) | −0.0046 (3) |
| C14 | 0.0202 (4) | 0.0244 (4) | 0.0272 (4) | −0.0010 (4) | −0.0003 (4) | −0.0096 (3) |
| C15 | 0.0204 (4) | 0.0338 (4) | 0.0206 (4) | −0.0048 (4) | 0.0046 (3) | −0.0091 (3) |
| C16 | 0.0209 (4) | 0.0269 (4) | 0.0190 (4) | −0.0046 (4) | 0.0007 (3) | −0.0009 (3) |
| C17 | 0.0155 (4) | 0.0215 (4) | 0.0176 (3) | −0.0036 (3) | −0.0012 (3) | −0.0027 (3) |
| O2 | 0.0240 (3) | 0.0216 (3) | 0.0246 (3) | −0.0012 (3) | 0.0020 (3) | −0.0029 (2) |
| O1—C8 | 1.3703 (10) | C6—H6A | 0.9300 |
| O1—C10 | 1.4230 (9) | C7—C8 | 1.3721 (11) |
| N1—C1 | 1.3268 (11) | C7—H7A | 0.9300 |
| N1—C9 | 1.3658 (11) | C8—C9 | 1.4303 (11) |
| N2—C11 | 1.3541 (11) | C10—C11 | 1.4864 (12) |
| N2—C12 | 1.3816 (11) | C10—H10A | 0.9700 |
| N2—H2A | 0.8600 | C10—H10B | 0.9700 |
| N3—C11 | 1.3253 (10) | C12—C13 | 1.3905 (12) |
| N3—C17 | 1.3930 (11) | C12—C17 | 1.4099 (11) |
| C1—C2 | 1.4087 (13) | C13—C14 | 1.3911 (13) |
| C1—H1B | 0.9300 | C13—H13A | 0.9300 |
| C2—C3 | 1.3640 (13) | C14—C15 | 1.4049 (12) |
| C2—H2B | 0.9300 | C14—H14A | 0.9300 |
| C3—C4 | 1.4172 (11) | C15—C16 | 1.3858 (13) |
| C3—H3B | 0.9300 | C15—H15A | 0.9300 |
| C4—C5 | 1.4183 (12) | C16—C17 | 1.3988 (12) |
| C4—C9 | 1.4227 (12) | C16—H16A | 0.9300 |
| C5—C6 | 1.3609 (11) | O2—H2WA | 0.860 (5) |
| C5—H5A | 0.9300 | O2—H2WB | 0.866 (5) |
| C6—C7 | 1.4173 (12) | ||
| C8—O1—C10 | 115.89 (6) | N1—C9—C8 | 119.05 (7) |
| C1—N1—C9 | 117.23 (8) | C4—C9—C8 | 118.17 (7) |
| C11—N2—C12 | 106.89 (6) | O1—C10—C11 | 108.42 (6) |
| C11—N2—H2A | 126.6 | O1—C10—H10A | 110.0 |
| C12—N2—H2A | 126.6 | C11—C10—H10A | 110.0 |
| C11—N3—C17 | 104.33 (7) | O1—C10—H10B | 110.0 |
| N1—C1—C2 | 124.28 (8) | C11—C10—H10B | 110.0 |
| N1—C1—H1B | 117.9 | H10A—C10—H10B | 108.4 |
| C2—C1—H1B | 117.9 | N3—C11—N2 | 113.77 (7) |
| C3—C2—C1 | 118.69 (8) | N3—C11—C10 | 122.66 (7) |
| C3—C2—H2B | 120.7 | N2—C11—C10 | 123.54 (7) |
| C1—C2—H2B | 120.7 | N2—C12—C13 | 132.08 (7) |
| C2—C3—C4 | 119.75 (8) | N2—C12—C17 | 105.26 (7) |
| C2—C3—H3B | 120.1 | C13—C12—C17 | 122.58 (8) |
| C4—C3—H3B | 120.1 | C12—C13—C14 | 116.62 (8) |
| C3—C4—C5 | 122.47 (8) | C12—C13—H13A | 121.7 |
| C3—C4—C9 | 117.22 (7) | C14—C13—H13A | 121.7 |
| C5—C4—C9 | 120.29 (7) | C13—C14—C15 | 121.61 (8) |
| C6—C5—C4 | 119.59 (8) | C13—C14—H14A | 119.2 |
| C6—C5—H5A | 120.2 | C15—C14—H14A | 119.2 |
| C4—C5—H5A | 120.2 | C16—C15—C14 | 121.34 (8) |
| C5—C6—C7 | 121.32 (8) | C16—C15—H15A | 119.3 |
| C5—C6—H6A | 119.3 | C14—C15—H15A | 119.3 |
| C7—C6—H6A | 119.3 | C15—C16—C17 | 118.01 (8) |
| C8—C7—C6 | 120.13 (7) | C15—C16—H16A | 121.0 |
| C8—C7—H7A | 119.9 | C17—C16—H16A | 121.0 |
| C6—C7—H7A | 119.9 | N3—C17—C16 | 130.41 (7) |
| O1—C8—C7 | 124.00 (7) | N3—C17—C12 | 109.74 (7) |
| O1—C8—C9 | 115.55 (7) | C16—C17—C12 | 119.82 (8) |
| C7—C8—C9 | 120.45 (7) | H2WA—O2—H2WB | 113.3 (6) |
| N1—C9—C4 | 122.78 (7) | ||
| C9—N1—C1—C2 | −1.10 (12) | C8—O1—C10—C11 | 175.34 (6) |
| N1—C1—C2—C3 | −0.66 (13) | C17—N3—C11—N2 | 0.46 (9) |
| C1—C2—C3—C4 | 1.48 (12) | C17—N3—C11—C10 | −177.96 (7) |
| C2—C3—C4—C5 | 177.95 (8) | C12—N2—C11—N3 | −0.79 (9) |
| C2—C3—C4—C9 | −0.58 (12) | C12—N2—C11—C10 | 177.61 (7) |
| C3—C4—C5—C6 | −176.63 (8) | O1—C10—C11—N3 | −177.95 (7) |
| C9—C4—C5—C6 | 1.85 (12) | O1—C10—C11—N2 | 3.80 (10) |
| C4—C5—C6—C7 | −1.94 (12) | C11—N2—C12—C13 | −176.09 (9) |
| C5—C6—C7—C8 | 0.15 (12) | C11—N2—C12—C17 | 0.74 (8) |
| C10—O1—C8—C7 | 5.26 (11) | N2—C12—C13—C14 | 177.02 (8) |
| C10—O1—C8—C9 | −175.18 (7) | C17—C12—C13—C14 | 0.64 (12) |
| C6—C7—C8—O1 | −178.74 (7) | C12—C13—C14—C15 | 0.56 (12) |
| C6—C7—C8—C9 | 1.72 (12) | C13—C14—C15—C16 | −0.82 (13) |
| C1—N1—C9—C4 | 2.06 (11) | C14—C15—C16—C17 | −0.15 (13) |
| C1—N1—C9—C8 | −177.72 (7) | C11—N3—C17—C16 | 178.14 (9) |
| C3—C4—C9—N1 | −1.25 (12) | C11—N3—C17—C12 | 0.05 (9) |
| C5—C4—C9—N1 | −179.81 (7) | C15—C16—C17—N3 | −176.62 (8) |
| C3—C4—C9—C8 | 178.52 (7) | C15—C16—C17—C12 | 1.31 (12) |
| C5—C4—C9—C8 | −0.03 (11) | N2—C12—C17—N3 | −0.50 (9) |
| O1—C8—C9—N1 | −1.54 (11) | C13—C12—C17—N3 | 176.71 (7) |
| C7—C8—C9—N1 | 178.04 (7) | N2—C12—C17—C16 | −178.82 (7) |
| O1—C8—C9—C4 | 178.67 (7) | C13—C12—C17—C16 | −1.61 (12) |
| C7—C8—C9—C4 | −1.75 (11) |
| H··· | ||||
| O2—H2 | 0.87 (1) | 2.03 (1) | 2.8892 (10) | 170 (1) |
| N2—H2 | 0.86 | 1.95 | 2.7880 (9) | 163 |
| O2—H2 | 0.86 (1) | 2.05 (1) | 2.9046 (9) | 174 (1) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H2 | 0.87 (1) | 2.03 (1) | 2.8892 (10) | 170 (1) |
| N2—H2 | 0.86 | 1.95 | 2.7880 (9) | 163 |
| O2—H2 | 0.86 (1) | 2.05 (1) | 2.9046 (9) | 174 (1) |
Symmetry code: (i) .