Literature DB >> 24454258

2-[(Quinolin-8-yl-oxy)meth-yl]-1H-benzimid-a-zole monohydrate.

Lin Tang1, Yue Zhang1, Yonghong Wen1.   

Abstract

In the title hydrate, C17H13N3O·H2O, the dihedral angle between the quinoline and benzimidazole ring systems is 6.22 (7)°. The water mol-ecule is linked to the main mol-ecule by N-H⋯O and O-H⋯N hydrogen bonds. Further O-H⋯N hydrogen bonds link the organic molecules into C(6) chains running parallel to the b axis.

Entities:  

Year:  2013        PMID: 24454258      PMCID: PMC3885082          DOI: 10.1107/S1600536813031322

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the properties and applications of benz­imidazole and 8-hy­droxy­quinoline and their derivatives, see: Hanna & Moawad (2002 ▶); Patel & Patel (1999 ▶); Pierre et al. (2003 ▶); Liu et al. (2005 ▶); Wang et al. (2006 ▶); Wen et al. (2011 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C17H13N3O·H2O M = 293.32 Orthorhombic, a = 6.1679 (12) Å b = 11.094 (2) Å c = 20.502 (4) Å V = 1402.9 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.12 × 0.10 × 0.06 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.989, T max = 0.994 10881 measured reflections 1947 independent reflections 1808 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.087 S = 1.06 1947 reflections 207 parameters 18 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813031322/bx2452sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813031322/bx2452Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H13N3O·H2OF(000) = 616
Mr = 293.32Dx = 1.389 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3957 reflections
a = 6.1679 (12) Åθ = 3.0–27.9°
b = 11.094 (2) ŵ = 0.09 mm1
c = 20.502 (4) ÅT = 293 K
V = 1402.9 (5) Å3Plate, colourless
Z = 40.12 × 0.10 × 0.06 mm
Bruker SMART CCD area-detector diffractometer1947 independent reflections
Radiation source: fine-focus sealed tube1808 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.048
phi and ω scansθmax = 27.9°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→7
Tmin = 0.989, Tmax = 0.994k = −14→13
10881 measured reflectionsl = −20→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.087H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0385P)2 + 0.4303P] where P = (Fo2 + 2Fc2)/3
1947 reflections(Δ/σ)max = 0.013
207 parametersΔρmax = 0.20 e Å3
18 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.70538 (9)0.86768 (5)0.14109 (3)0.01892 (14)
N10.82709 (12)1.03042 (6)0.05135 (3)0.01977 (14)
N20.34077 (11)0.92882 (6)0.20550 (3)0.01772 (16)
H2A0.37460.97640.17400.021*
N30.36377 (12)0.77363 (6)0.27537 (3)0.01932 (14)
C10.88756 (16)1.10840 (7)0.00577 (4)0.0235 (2)
H1B0.79801.1743−0.00210.028*
C21.07849 (16)1.09794 (8)−0.03150 (4)0.0242 (2)
H2B1.11221.1549−0.06320.029*
C31.21293 (15)1.00257 (8)−0.02022 (4)0.0235 (2)
H3B1.34150.9949−0.04360.028*
C41.15598 (14)0.91521 (7)0.02721 (4)0.01900 (19)
C51.28526 (14)0.81205 (8)0.03975 (4)0.0201 (2)
H5A1.41660.80170.01820.024*
C61.21598 (14)0.72833 (7)0.08357 (4)0.0197 (2)
H6A1.29900.65960.09070.024*
C71.01976 (13)0.74376 (7)0.11856 (4)0.01837 (19)
H7A0.97550.68550.14840.022*
C80.89491 (13)0.84444 (7)0.10856 (4)0.01745 (19)
C90.95816 (14)0.93301 (7)0.06158 (4)0.01845 (15)
C100.65019 (14)0.78507 (7)0.19152 (4)0.01846 (19)
H10A0.76840.77890.22250.022*
H10B0.62400.70580.17320.022*
C110.45163 (14)0.82967 (7)0.22478 (4)0.01850 (15)
C120.16288 (13)0.93884 (7)0.24609 (4)0.01765 (19)
C13−0.01106 (15)1.01856 (7)0.24679 (4)0.0214 (2)
H13A−0.02091.08200.21730.026*
C14−0.16961 (15)0.99854 (7)0.29382 (4)0.0239 (2)
H14A−0.28921.04950.29560.029*
C15−0.15352 (15)0.90322 (8)0.33867 (4)0.0249 (2)
H15A−0.26160.89310.36980.030*
C160.02011 (15)0.82397 (8)0.33743 (4)0.0223 (2)
H16A0.03010.76110.36730.027*
C170.17982 (14)0.84134 (7)0.28990 (4)0.01820 (19)
O20.45798 (10)1.11879 (5)0.12375 (3)0.02338 (15)
H2WA0.5052 (13)1.1686 (4)0.1525 (2)0.053 (3)*
H2WB0.5604 (8)1.0836 (5)0.1021 (3)0.047 (3)*
U11U22U33U12U13U23
O10.0167 (3)0.0218 (3)0.0183 (2)0.0025 (2)0.0034 (2)0.0034 (2)
N10.0224 (3)0.0198 (2)0.0171 (2)0.0001 (2)0.0005 (2)−0.0011 (2)
N20.0172 (3)0.0179 (3)0.0180 (3)−0.0017 (3)0.0009 (3)0.0006 (3)
N30.0177 (3)0.0228 (2)0.0175 (2)−0.0019 (2)0.0002 (2)0.0011 (2)
C10.0309 (5)0.0189 (3)0.0207 (4)0.0007 (4)−0.0001 (4)0.0000 (3)
C20.0298 (5)0.0236 (4)0.0192 (4)−0.0066 (4)0.0023 (3)0.0007 (3)
C30.0238 (4)0.0275 (4)0.0191 (4)−0.0059 (4)0.0020 (4)−0.0018 (3)
C40.0182 (4)0.0230 (4)0.0159 (3)−0.0042 (4)−0.0020 (3)−0.0037 (3)
C50.0140 (4)0.0289 (4)0.0175 (3)−0.0006 (4)0.0003 (3)−0.0048 (3)
C60.0179 (4)0.0228 (4)0.0184 (4)0.0035 (4)−0.0024 (3)−0.0025 (3)
C70.0173 (4)0.0208 (3)0.0169 (3)−0.0005 (3)−0.0018 (3)−0.0001 (3)
C80.0159 (4)0.0210 (3)0.0154 (3)−0.0013 (3)−0.0006 (3)−0.0028 (3)
C90.0202 (3)0.0185 (2)0.0167 (3)−0.0009 (2)−0.0010 (3)−0.0021 (2)
C100.0180 (4)0.0189 (3)0.0184 (3)−0.0028 (4)0.0023 (3)0.0019 (3)
C110.0174 (3)0.0211 (3)0.0170 (3)−0.0024 (3)−0.0014 (2)0.0000 (2)
C120.0164 (4)0.0198 (3)0.0168 (3)−0.0039 (3)0.0003 (3)−0.0042 (3)
C130.0221 (4)0.0188 (3)0.0234 (4)−0.0007 (4)−0.0013 (3)−0.0046 (3)
C140.0202 (4)0.0244 (4)0.0272 (4)−0.0010 (4)−0.0003 (4)−0.0096 (3)
C150.0204 (4)0.0338 (4)0.0206 (4)−0.0048 (4)0.0046 (3)−0.0091 (3)
C160.0209 (4)0.0269 (4)0.0190 (4)−0.0046 (4)0.0007 (3)−0.0009 (3)
C170.0155 (4)0.0215 (4)0.0176 (3)−0.0036 (3)−0.0012 (3)−0.0027 (3)
O20.0240 (3)0.0216 (3)0.0246 (3)−0.0012 (3)0.0020 (3)−0.0029 (2)
O1—C81.3703 (10)C6—H6A0.9300
O1—C101.4230 (9)C7—C81.3721 (11)
N1—C11.3268 (11)C7—H7A0.9300
N1—C91.3658 (11)C8—C91.4303 (11)
N2—C111.3541 (11)C10—C111.4864 (12)
N2—C121.3816 (11)C10—H10A0.9700
N2—H2A0.8600C10—H10B0.9700
N3—C111.3253 (10)C12—C131.3905 (12)
N3—C171.3930 (11)C12—C171.4099 (11)
C1—C21.4087 (13)C13—C141.3911 (13)
C1—H1B0.9300C13—H13A0.9300
C2—C31.3640 (13)C14—C151.4049 (12)
C2—H2B0.9300C14—H14A0.9300
C3—C41.4172 (11)C15—C161.3858 (13)
C3—H3B0.9300C15—H15A0.9300
C4—C51.4183 (12)C16—C171.3988 (12)
C4—C91.4227 (12)C16—H16A0.9300
C5—C61.3609 (11)O2—H2WA0.860 (5)
C5—H5A0.9300O2—H2WB0.866 (5)
C6—C71.4173 (12)
C8—O1—C10115.89 (6)N1—C9—C8119.05 (7)
C1—N1—C9117.23 (8)C4—C9—C8118.17 (7)
C11—N2—C12106.89 (6)O1—C10—C11108.42 (6)
C11—N2—H2A126.6O1—C10—H10A110.0
C12—N2—H2A126.6C11—C10—H10A110.0
C11—N3—C17104.33 (7)O1—C10—H10B110.0
N1—C1—C2124.28 (8)C11—C10—H10B110.0
N1—C1—H1B117.9H10A—C10—H10B108.4
C2—C1—H1B117.9N3—C11—N2113.77 (7)
C3—C2—C1118.69 (8)N3—C11—C10122.66 (7)
C3—C2—H2B120.7N2—C11—C10123.54 (7)
C1—C2—H2B120.7N2—C12—C13132.08 (7)
C2—C3—C4119.75 (8)N2—C12—C17105.26 (7)
C2—C3—H3B120.1C13—C12—C17122.58 (8)
C4—C3—H3B120.1C12—C13—C14116.62 (8)
C3—C4—C5122.47 (8)C12—C13—H13A121.7
C3—C4—C9117.22 (7)C14—C13—H13A121.7
C5—C4—C9120.29 (7)C13—C14—C15121.61 (8)
C6—C5—C4119.59 (8)C13—C14—H14A119.2
C6—C5—H5A120.2C15—C14—H14A119.2
C4—C5—H5A120.2C16—C15—C14121.34 (8)
C5—C6—C7121.32 (8)C16—C15—H15A119.3
C5—C6—H6A119.3C14—C15—H15A119.3
C7—C6—H6A119.3C15—C16—C17118.01 (8)
C8—C7—C6120.13 (7)C15—C16—H16A121.0
C8—C7—H7A119.9C17—C16—H16A121.0
C6—C7—H7A119.9N3—C17—C16130.41 (7)
O1—C8—C7124.00 (7)N3—C17—C12109.74 (7)
O1—C8—C9115.55 (7)C16—C17—C12119.82 (8)
C7—C8—C9120.45 (7)H2WA—O2—H2WB113.3 (6)
N1—C9—C4122.78 (7)
C9—N1—C1—C2−1.10 (12)C8—O1—C10—C11175.34 (6)
N1—C1—C2—C3−0.66 (13)C17—N3—C11—N20.46 (9)
C1—C2—C3—C41.48 (12)C17—N3—C11—C10−177.96 (7)
C2—C3—C4—C5177.95 (8)C12—N2—C11—N3−0.79 (9)
C2—C3—C4—C9−0.58 (12)C12—N2—C11—C10177.61 (7)
C3—C4—C5—C6−176.63 (8)O1—C10—C11—N3−177.95 (7)
C9—C4—C5—C61.85 (12)O1—C10—C11—N23.80 (10)
C4—C5—C6—C7−1.94 (12)C11—N2—C12—C13−176.09 (9)
C5—C6—C7—C80.15 (12)C11—N2—C12—C170.74 (8)
C10—O1—C8—C75.26 (11)N2—C12—C13—C14177.02 (8)
C10—O1—C8—C9−175.18 (7)C17—C12—C13—C140.64 (12)
C6—C7—C8—O1−178.74 (7)C12—C13—C14—C150.56 (12)
C6—C7—C8—C91.72 (12)C13—C14—C15—C16−0.82 (13)
C1—N1—C9—C42.06 (11)C14—C15—C16—C17−0.15 (13)
C1—N1—C9—C8−177.72 (7)C11—N3—C17—C16178.14 (9)
C3—C4—C9—N1−1.25 (12)C11—N3—C17—C120.05 (9)
C5—C4—C9—N1−179.81 (7)C15—C16—C17—N3−176.62 (8)
C3—C4—C9—C8178.52 (7)C15—C16—C17—C121.31 (12)
C5—C4—C9—C8−0.03 (11)N2—C12—C17—N3−0.50 (9)
O1—C8—C9—N1−1.54 (11)C13—C12—C17—N3176.71 (7)
C7—C8—C9—N1178.04 (7)N2—C12—C17—C16−178.82 (7)
O1—C8—C9—C4178.67 (7)C13—C12—C17—C16−1.61 (12)
C7—C8—C9—C4−1.75 (11)
D—H···AD—HH···AD···AD—H···A
O2—H2WB···N10.87 (1)2.03 (1)2.8892 (10)170 (1)
N2—H2A···O20.861.952.7880 (9)163
O2—H2WA···N3i0.86 (1)2.05 (1)2.9046 (9)174 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2WB⋯N10.87 (1)2.03 (1)2.8892 (10)170 (1)
N2—H2A⋯O20.861.952.7880 (9)163
O2—H2WA⋯N3i 0.86 (1)2.05 (1)2.9046 (9)174 (1)

Symmetry code: (i) .

  3 in total

1.  Blue luminescent 2-(2'-pyridyl)benzimidazole derivative ligands and their orange luminescent mononuclear and polynuclear organoplatinum(II) complexes.

Authors:  Qin-De Liu; Wen-Li Jia; Suning Wang
Journal:  Inorg Chem       Date:  2005-03-07       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Hydroxyquinolines as iron chelators.

Authors:  J-L Pierre; P Baret; G Serratrice
Journal:  Curr Med Chem       Date:  2003-06       Impact factor: 4.530

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.