Literature DB >> 24454257

N-(2-Oxo-2,3,4,5,6,7-hexa-hydro-1H-azepin-3-yl)cyclo-hexa-necarboxamide.

Shi Chunjuan1, Yang Zhao2.   

Abstract

In the title compound, C13H22N2O2, both the six-membered ring and the seven-membered lactam ring adopt chair conformations. In the crystal, mol-ecules are linked by pairs of N-H⋯O hydrogen bonds between inversion-related lactam rings into centrosymmetric dimers with an R 2 (2)(8) graph-set motif. Further N-H⋯O hydrogen bonds link the molecules into [100] chains.

Entities:  

Year:  2013        PMID: 24454257      PMCID: PMC3885081          DOI: 10.1107/S1600536813031863

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on 3-(acyl­amino)­azepan-2-ones, see: Fox et al. (2009 ▶); Grainger & Fox (2006 ▶). For a related crystal structure, see: Zhu et al. (2007 ▶).

Experimental

Crystal data

C13H22N2O2 M = 238.33 Triclinic, a = 5.007 (1) Å b = 11.642 (2) Å c = 12.739 (3) Å α = 63.66 (3)° β = 82.69 (3)° γ = 82.75 (3)° V = 658.0 (2) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.976, T max = 0.992 2700 measured reflections 2400 independent reflections 1581 reflections with I > 2σ(I) R int = 0.073 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.177 S = 1.01 2400 reflections 154 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) Y, I. DOI: 10.1107/S1600536813031863/pk2501sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813031863/pk2501Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813031863/pk2501Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H22N2O2Z = 2
Mr = 238.33F(000) = 260
Triclinic, P1Dx = 1.203 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.007 (1) ÅCell parameters from 25 reflections
b = 11.642 (2) Åθ = 9–13°
c = 12.739 (3) ŵ = 0.08 mm1
α = 63.66 (3)°T = 293 K
β = 82.69 (3)°Block, colorless
γ = 82.75 (3)°0.30 × 0.20 × 0.10 mm
V = 658.0 (2) Å3
Enraf–Nonius CAD-4 diffractometer1581 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.073
Graphite monochromatorθmax = 25.4°, θmin = 1.8°
ω/2θ scansh = 0→6
Absorption correction: ψ scan (North et al., 1968)k = −13→14
Tmin = 0.976, Tmax = 0.992l = −15→15
2700 measured reflections3 standard reflections every 200 reflections
2400 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.177H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.095P)2] where P = (Fo2 + 2Fc2)/3
2400 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.3592 (4)0.2916 (2)0.81058 (18)0.0438 (6)
H1A0.52520.30960.79360.053*
O1−0.0132 (4)0.2579 (2)0.74942 (18)0.0665 (7)
C10.4450 (6)0.1452 (3)0.6317 (3)0.0548 (8)
H1B0.54150.08990.70030.066*
H1C0.27220.11100.64070.066*
O20.5524 (4)0.42401 (18)0.90229 (15)0.0477 (5)
N20.2504 (4)0.3723 (2)1.05959 (17)0.0430 (6)
H2A0.32720.42101.07940.052*
C20.6071 (7)0.1457 (3)0.5219 (3)0.0714 (10)
H2B0.78500.17380.51610.086*
H2C0.62950.05920.52760.086*
C30.4643 (7)0.2349 (4)0.4128 (3)0.0727 (11)
H3A0.57180.23570.34360.087*
H3B0.29120.20370.41630.087*
C40.4213 (8)0.3700 (3)0.4037 (3)0.0719 (10)
H4A0.59510.40400.39300.086*
H4B0.32280.42490.33570.086*
C50.2662 (6)0.3715 (3)0.5124 (2)0.0508 (7)
H5A0.08500.34710.51760.061*
H5B0.25120.45820.50600.061*
C60.3986 (5)0.2813 (2)0.6235 (2)0.0376 (6)
H6A0.57420.31170.62100.045*
C70.2294 (5)0.2772 (2)0.7325 (2)0.0408 (6)
C80.2270 (5)0.2776 (2)0.9237 (2)0.0382 (6)
H8A0.03590.30770.91360.046*
C90.3562 (5)0.3637 (2)0.9613 (2)0.0353 (6)
C100.0196 (5)0.3088 (3)1.1375 (2)0.0468 (7)
H10A−0.13600.33131.09190.056*
H10B−0.02250.34111.19640.056*
C110.0673 (7)0.1631 (3)1.1989 (2)0.0549 (8)
H11A0.24690.14051.22670.066*
H11B−0.06170.13011.26700.066*
C120.0410 (6)0.0989 (3)1.1204 (2)0.0534 (8)
H12A−0.13960.12091.09370.064*
H12B0.06110.00641.16670.064*
C130.2449 (6)0.1356 (3)1.0132 (2)0.0479 (7)
H13A0.22240.08390.97310.057*
H13B0.42500.11301.04040.057*
U11U22U33U12U13U23
N10.0397 (12)0.0635 (15)0.0449 (12)−0.0215 (10)0.0136 (10)−0.0387 (11)
O10.0423 (12)0.1187 (19)0.0656 (14)−0.0274 (11)0.0159 (10)−0.0641 (14)
C10.0622 (18)0.0482 (17)0.0599 (18)−0.0033 (14)0.0042 (15)−0.0314 (15)
O20.0554 (11)0.0538 (11)0.0469 (10)−0.0262 (9)0.0179 (9)−0.0336 (9)
N20.0517 (13)0.0472 (13)0.0420 (12)−0.0192 (10)0.0138 (10)−0.0306 (10)
C20.068 (2)0.079 (2)0.099 (3)−0.0141 (18)0.022 (2)−0.071 (2)
C30.073 (2)0.111 (3)0.062 (2)−0.033 (2)0.0272 (18)−0.065 (2)
C40.094 (3)0.077 (2)0.0431 (17)−0.029 (2)0.0159 (17)−0.0247 (16)
C50.0596 (18)0.0468 (16)0.0490 (16)−0.0079 (13)0.0016 (14)−0.0242 (13)
C60.0378 (13)0.0428 (14)0.0415 (14)−0.0134 (11)0.0080 (11)−0.0270 (12)
C70.0373 (14)0.0506 (16)0.0474 (15)−0.0141 (11)0.0088 (12)−0.0332 (13)
C80.0371 (13)0.0455 (15)0.0413 (14)−0.0134 (11)0.0101 (11)−0.0281 (12)
C90.0370 (13)0.0357 (13)0.0369 (13)−0.0098 (11)0.0065 (11)−0.0199 (11)
C100.0506 (16)0.0488 (16)0.0448 (15)−0.0134 (12)0.0154 (13)−0.0263 (13)
C110.0694 (19)0.0503 (17)0.0468 (16)−0.0218 (14)0.0153 (15)−0.0236 (14)
C120.0667 (18)0.0439 (16)0.0517 (17)−0.0234 (14)0.0096 (15)−0.0215 (13)
C130.0565 (16)0.0448 (16)0.0565 (17)−0.0137 (13)0.0070 (14)−0.0351 (14)
N1—C71.334 (3)C4—H4B0.9700
N1—C81.455 (3)C5—C61.513 (4)
N1—H1A0.8600C5—H5A0.9700
O1—C71.238 (3)C5—H5B0.9700
C1—C21.523 (4)C6—C71.516 (3)
C1—C61.530 (3)C6—H6A0.9800
C1—H1B0.9700C8—C91.524 (3)
C1—H1C0.9700C8—C131.536 (4)
O2—C91.241 (3)C8—H8A0.9800
N2—C91.337 (3)C10—C111.522 (4)
N2—C101.462 (3)C10—H10A0.9700
N2—H2A0.8600C10—H10B0.9700
C2—C31.519 (5)C11—C121.516 (4)
C2—H2B0.9700C11—H11A0.9700
C2—H2C0.9700C11—H11B0.9700
C3—C41.515 (5)C12—C131.526 (4)
C3—H3A0.9700C12—H12A0.9700
C3—H3B0.9700C12—H12B0.9700
C4—C51.505 (4)C13—H13A0.9700
C4—H4A0.9700C13—H13B0.9700
C7—N1—C8121.7 (2)C5—C6—H6A108.5
C7—N1—H1A119.2C7—C6—H6A108.5
C8—N1—H1A119.2C1—C6—H6A108.5
C2—C1—C6110.7 (2)O1—C7—N1122.0 (2)
C2—C1—H1B109.5O1—C7—C6121.9 (2)
C6—C1—H1B109.5N1—C7—C6116.1 (2)
C2—C1—H1C109.5N1—C8—C9108.04 (19)
C6—C1—H1C109.5N1—C8—C13110.16 (19)
H1B—C1—H1C108.1C9—C8—C13113.2 (2)
C9—N2—C10127.8 (2)N1—C8—H8A108.5
C9—N2—H2A116.1C9—C8—H8A108.5
C10—N2—H2A116.1C13—C8—H8A108.5
C3—C2—C1110.5 (3)O2—C9—N2121.3 (2)
C3—C2—H2B109.5O2—C9—C8121.0 (2)
C1—C2—H2B109.5N2—C9—C8117.7 (2)
C3—C2—H2C109.5N2—C10—C11113.6 (2)
C1—C2—H2C109.5N2—C10—H10A108.8
H2B—C2—H2C108.1C11—C10—H10A108.8
C4—C3—C2110.5 (3)N2—C10—H10B108.8
C4—C3—H3A109.6C11—C10—H10B108.8
C2—C3—H3A109.6H10A—C10—H10B107.7
C4—C3—H3B109.6C12—C11—C10113.2 (2)
C2—C3—H3B109.6C12—C11—H11A108.9
H3A—C3—H3B108.1C10—C11—H11A108.9
C5—C4—C3111.0 (2)C12—C11—H11B108.9
C5—C4—H4A109.4C10—C11—H11B108.9
C3—C4—H4A109.4H11A—C11—H11B107.8
C5—C4—H4B109.4C11—C12—C13114.7 (2)
C3—C4—H4B109.4C11—C12—H12A108.6
H4A—C4—H4B108.0C13—C12—H12A108.6
C4—C5—C6112.5 (2)C11—C12—H12B108.6
C4—C5—H5A109.1C13—C12—H12B108.6
C6—C5—H5A109.1H12A—C12—H12B107.6
C4—C5—H5B109.1C12—C13—C8116.1 (2)
C6—C5—H5B109.1C12—C13—H13A108.3
H5A—C5—H5B107.8C8—C13—H13A108.3
C5—C6—C7111.7 (2)C12—C13—H13B108.3
C5—C6—C1110.5 (2)C8—C13—H13B108.3
C7—C6—C1109.0 (2)H13A—C13—H13B107.4
C6—C1—C2—C3−57.4 (3)C7—N1—C8—C9−150.4 (2)
C1—C2—C3—C457.9 (3)C7—N1—C8—C1385.5 (3)
C2—C3—C4—C5−56.5 (4)C10—N2—C9—O2179.3 (2)
C3—C4—C5—C655.4 (4)C10—N2—C9—C8−0.4 (4)
C4—C5—C6—C7−176.0 (2)N1—C8—C9—O2−4.5 (3)
C4—C5—C6—C1−54.5 (3)C13—C8—C9—O2117.8 (3)
C2—C1—C6—C555.1 (3)N1—C8—C9—N2175.3 (2)
C2—C1—C6—C7178.2 (2)C13—C8—C9—N2−62.5 (3)
C8—N1—C7—O13.9 (4)C9—N2—C10—C1165.1 (3)
C8—N1—C7—C6−174.2 (2)N2—C10—C11—C12−78.0 (3)
C5—C6—C7—O151.0 (3)C10—C11—C12—C1362.3 (3)
C1—C6—C7—O1−71.4 (3)C11—C12—C13—C8−63.3 (3)
C5—C6—C7—N1−131.0 (3)N1—C8—C13—C12−160.1 (2)
C1—C6—C7—N1106.7 (3)C9—C8—C13—C1278.9 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.862.373.158 (3)152
N2—H2A···O2ii0.862.092.927 (3)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O1i 0.862.373.158 (3)152
N2—H2A⋯O2ii 0.862.092.927 (3)165

Symmetry codes: (i) ; (ii) .

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