Literature DB >> 24454239

2,5-Di-meth-oxy-benzo-nitrile.

Bernhard Bugenhagen1, Yosef Al Jasem2, Thies Thiemann3.   

Abstract

In the title mol-ecule, C9H9NO2, the non-H atoms are essentially coplanar with a maximum deviation of 0.027 (2) Å for the C atom of one of the methyl groups. In the crystal, the mol-ecules are arranged into centrosymmetric pairs via pairs of C-H⋯O and C-H⋯N inter-actions whereas π-π stacking inter-actions between the benzene rings [centroid-centroid distance 3.91001 (15) Å] organize them into polymeric strands propagating along the a-axis direction. There is a step of 0.644 (2) Å between the two planar parts of the centrosymmetric pair. In neighboring strands related by the n-glide operation, the aromatic rings are tilted by 29.08 (2)°.

Entities:  

Year:  2013        PMID: 24454239      PMCID: PMC3885063          DOI: 10.1107/S1600536813031309

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of the title compound as a key reagent in the synthesis of pharmaceutically active heterocycles, see: Bergeron et al. (2006 ▶); Delgado et al. (1987 ▶). For another method of preparation of the title compound, see: Ushijima et al. (2012 ▶). For the crystal structures of aromatic nitriles, see: Buschmann et al. (1995 ▶); Zabinski et al. (2007 ▶); Zanotti et al. (1980 ▶).

Experimental

Crystal data

C9H9NO2 M = 163.17 Monoclinic, a = 3.91001 (15) Å b = 11.3347 (4) Å c = 17.8432 (6) Å β = 93.400 (3)° V = 789.40 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.60 × 0.25 × 0.23 mm

Data collection

Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013 ▶) T min = 0.899, T max = 1.000 3225 measured reflections 1785 independent reflections 1374 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.116 S = 1.06 1785 reflections 111 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrysAlis PRO (Agilent, 2013 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) within OLEX2 (Dolomanov et al., 2009 ▶); molecular graphics: PLATON (Spek, 2009 ▶); Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813031309/gk2594sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813031309/gk2594Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813031309/gk2594Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H9NO2Dx = 1.373 Mg m3
Mr = 163.17Melting point = 360–361 K
Monoclinic, P21/nMo Kα radiation, λ = 0.7107 Å
a = 3.91001 (15) ÅCell parameters from 1290 reflections
b = 11.3347 (4) Åθ = 3.6–32.0°
c = 17.8432 (6) ŵ = 0.10 mm1
β = 93.400 (3)°T = 100 K
V = 789.40 (5) Å3Block, colourless
Z = 40.60 × 0.25 × 0.23 mm
F(000) = 344
Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer1785 independent reflections
Radiation source: SuperNova (Mo) X-ray Source1374 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.026
Detector resolution: 10.4127 pixels mm-1θmax = 27.5°, θmin = 3.6°
ω scansh = −5→4
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013)k = −9→14
Tmin = 0.899, Tmax = 1.000l = −21→23
3225 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.116w = 1/[σ2(Fo2) + (0.048P)2 + 0.110P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
1785 reflectionsΔρmax = 0.21 e Å3
111 parametersΔρmin = −0.24 e Å3
0 restraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C11.1608 (4)0.84580 (13)0.32618 (8)0.0170 (3)
C21.1137 (4)0.96337 (13)0.34798 (7)0.0170 (3)
C30.9434 (4)1.03957 (13)0.29791 (8)0.0178 (3)
C40.8238 (4)1.00071 (13)0.22693 (8)0.0180 (3)
C50.8723 (4)0.88435 (13)0.20555 (8)0.0166 (3)
C61.0425 (4)0.80699 (13)0.25538 (7)0.0178 (3)
C71.3310 (4)0.76401 (14)0.37753 (8)0.0193 (3)
C81.1889 (4)1.11088 (14)0.44323 (8)0.0214 (4)
C90.5943 (4)0.91476 (14)0.08362 (8)0.0227 (4)
H30.90771.11920.31200.021*
H40.70861.05410.19300.022*
H61.07820.72740.24100.021*
H8A1.29631.16680.40990.032*
H8B1.28951.12020.49450.032*
H8C0.94211.12640.44250.032*
H9A0.53170.87080.03750.034*
H9B0.74980.97930.07230.034*
H9C0.38720.94720.10410.034*
N11.4646 (4)0.69750 (12)0.41812 (7)0.0264 (3)
O11.2456 (3)0.99244 (9)0.41788 (5)0.0202 (3)
O20.7618 (3)0.83694 (9)0.13775 (5)0.0219 (3)
U11U22U33U12U13U23
C10.0161 (7)0.0162 (8)0.0189 (7)−0.0002 (6)0.0038 (5)0.0027 (6)
C20.0161 (8)0.0185 (8)0.0165 (7)−0.0017 (6)0.0025 (5)0.0012 (6)
C30.0184 (8)0.0147 (7)0.0204 (7)0.0000 (6)0.0026 (6)−0.0003 (6)
C40.0178 (8)0.0170 (7)0.0194 (7)0.0008 (6)0.0024 (6)0.0039 (6)
C50.0157 (7)0.0176 (8)0.0165 (7)−0.0028 (6)0.0020 (5)0.0008 (6)
C60.0169 (8)0.0164 (7)0.0206 (7)−0.0007 (6)0.0041 (6)−0.0001 (6)
C70.0210 (8)0.0174 (8)0.0196 (7)−0.0005 (7)0.0030 (6)−0.0018 (6)
C80.0260 (9)0.0184 (8)0.0196 (7)0.0012 (7)−0.0007 (6)−0.0027 (6)
C90.0256 (9)0.0229 (8)0.0189 (7)−0.0011 (7)−0.0029 (6)0.0031 (6)
N10.0334 (9)0.0212 (7)0.0243 (7)0.0046 (6)−0.0004 (6)0.0003 (6)
O10.0258 (6)0.0172 (6)0.0171 (5)0.0027 (5)−0.0029 (4)−0.0009 (4)
O20.0281 (6)0.0196 (6)0.0174 (5)0.0000 (5)−0.0033 (4)0.0002 (4)
C2—C11.404 (2)C8—H8C0.9800
C2—C31.384 (2)C8—H8B0.9800
C3—C41.395 (2)C8—H8A0.9800
C3—H30.9500C9—H9C0.9800
C4—H40.9500C9—H9B0.9800
C5—C41.389 (2)C9—H9A0.9800
C5—C61.390 (2)O1—C81.4381 (18)
C6—C11.391 (2)O1—C21.3616 (17)
C6—H60.9500O2—C91.4370 (18)
C7—N11.1492 (19)O2—C51.3700 (17)
C7—C11.439 (2)
C1—C6—H6119.9H8A—C8—H8B109.5
C2—C1—C7119.92 (13)H8B—C8—H8C109.5
C2—C3—C4120.75 (14)H9A—C9—H9C109.5
C2—C3—H3119.6H9A—C9—H9B109.5
C2—O1—C8117.18 (11)H9B—C9—H9C109.5
C3—C4—H4119.8N1—C7—C1179.12 (16)
C3—C2—C1118.65 (13)O1—C8—H8C109.5
C4—C3—H3119.6O1—C8—H8B109.5
C4—C5—C6119.42 (13)O1—C8—H8A109.5
C5—C4—H4119.8O1—C2—C1115.77 (13)
C5—C4—C3120.35 (14)O1—C2—C3125.57 (14)
C5—C6—C1120.16 (14)O2—C9—H9C109.5
C5—C6—H6119.9O2—C9—H9B109.5
C5—O2—C9117.39 (11)O2—C9—H9A109.5
C6—C1—C7119.42 (13)O2—C5—C4125.03 (13)
C6—C1—C2120.67 (14)O2—C5—C6115.55 (13)
H8A—C8—H8C109.5
D—H···AD—HH···AD···AD—H···A
C8—H8B···O1i0.982.653.428 (2)136
C8—H8B···N1i0.982.733.504 (2)136
C9—H9B···N1ii0.982.713.640 (2)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C8—H8B⋯O1i 0.982.653.428 (2)136
C8—H8B⋯N1i 0.982.733.504 (2)136
C9—H9B⋯N1ii 0.982.713.640 (2)158

Symmetry codes: (i) ; (ii) .

  3 in total

1.  The design, synthesis, and evaluation of organ-specific iron chelators.

Authors:  Raymond J Bergeron; Jan Wiegand; James S McManis; Neelam Bharti
Journal:  J Med Chem       Date:  2006-11-30       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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