Literature DB >> 24454219

(3aR,8bR)-3a,8b-Dihy-droxy-2-methyl-sulfanyl-3-nitro-1-phenyl-1,8b-di-hydro-indeno[1,2-b]pyrrol-4(3aH)-one.

R A Nagalakshmi1, J Suresh1, V Jeyachandran2, R Ranjith Kumar2, P L Nilantha Lakshman3.   

Abstract

In the title compound, C18H14N2O5, the pyrrolidine ring adopts a shallow envelope conformation, with the C atom bearing the OH group (and remote from the N atom) displaced by 0.257 (2) Å from the other atoms. The cyclo-pentane ring has a twisted conformation about the C-C bond bearing one =O and one -OH grouping. The dihedral angle between the five-membered rings (all atoms) is 65.54 (9)° and the OH groups lie to the same side of the ring-junction. The mol-ecular structure features a weak intra-molecular O-H⋯O bond and a possible C-H⋯π inter-action. In the crystal, the mol-ecules are linked into [010] chains by O-H⋯O hydrogen bonds. Weak C-H⋯O bonds connect the chains into (100) sheets.

Entities:  

Year:  2013        PMID: 24454219      PMCID: PMC3885043          DOI: 10.1107/S1600536813029577

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to pyrrolidine derivatives, see: Grigg (1995 ▶); Kravchenko et al. (2005 ▶). For ring conformation analysis, see: Cremer & Pople (1975 ▶). For a related structure, see: Ghorbani (2012 ▶).

Experimental

Crystal data

C18H14N2O5S M = 370.37 Orthorhombic, a = 9.6625 (3) Å b = 10.8994 (2) Å c = 15.8154 (4) Å V = 1665.61 (7) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 293 K 0.21 × 0.19 × 0.18 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.967, T max = 0.974 9249 measured reflections 4140 independent reflections 3800 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.092 S = 1.00 4140 reflections 236 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.19 e Å−3 Absolute structure: Flack (1983 ▶) Absolute structure parameter: 0.00 (6) Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813029577/hb7154sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813029577/hb7154Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H14N2O5SF(000) = 768
Mr = 370.37Dx = 1.477 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2000 reflections
a = 9.6625 (3) Åθ = 2–31°
b = 10.8994 (2) ŵ = 0.23 mm1
c = 15.8154 (4) ÅT = 293 K
V = 1665.61 (7) Å3Block, colourless
Z = 40.21 × 0.19 × 0.18 mm
Bruker Kappa APEXII diffractometer4140 independent reflections
Radiation source: fine-focus sealed tube3800 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.018
Detector resolution: 0 pixels mm-1θmax = 28.3°, θmin = 2.3°
ω and φ scansh = −12→12
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −12→14
Tmin = 0.967, Tmax = 0.974l = −18→21
9249 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H-atom parameters constrained
wR(F2) = 0.092w = 1/[σ2(Fo2) + (0.0557P)2 + 0.2428P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
4140 reflectionsΔρmax = 0.23 e Å3
236 parametersΔρmin = −0.19 e Å3
0 restraintsAbsolute structure: Flack (1983), 000 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.00 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ (F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F.2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.14622 (15)−0.06791 (13)0.10358 (9)0.0281 (3)
C20.07556 (17)−0.17588 (14)0.05420 (10)0.0322 (3)
C30.07626 (16)−0.12630 (14)−0.03423 (9)0.0315 (3)
C40.16436 (15)−0.02676 (14)−0.04222 (9)0.0287 (3)
C50.3928 (2)0.0803 (2)−0.11431 (14)0.0551 (5)
H5A0.43420.1155−0.16390.083*
H5B0.44610.0106−0.09640.083*
H5C0.39100.1403−0.06990.083*
C6−0.07130 (19)−0.18225 (19)0.09064 (12)0.0447 (4)
C7−0.09638 (18)−0.06680 (17)0.13669 (12)0.0426 (4)
C80.02672 (16)−0.00269 (14)0.14699 (9)0.0326 (3)
C90.0300 (2)0.10338 (17)0.19568 (11)0.0438 (4)
H90.11210.14610.20440.053*
C10−0.0939 (3)0.1434 (2)0.23091 (13)0.0583 (6)
H10−0.09410.21460.26330.070*
C11−0.2169 (3)0.0807 (2)0.21922 (15)0.0663 (6)
H11−0.29820.11100.24280.080*
C12−0.2199 (2)−0.0259 (2)0.17303 (15)0.0612 (5)
H12−0.3018−0.06970.16610.073*
C130.25948 (16)0.12942 (13)0.05639 (10)0.0318 (3)
C140.3684 (2)0.14182 (18)0.11299 (11)0.0446 (4)
H140.41430.07290.13350.054*
C150.4078 (2)0.2584 (2)0.13854 (14)0.0559 (5)
H150.47810.26740.17820.067*
C160.3443 (3)0.36057 (19)0.10607 (15)0.0605 (6)
H160.37290.43830.12290.073*
C170.2376 (2)0.34801 (17)0.04819 (16)0.0566 (5)
H170.19540.41730.02550.068*
C180.1936 (2)0.23165 (15)0.02401 (12)0.0430 (4)
H180.12030.2227−0.01360.052*
N10.21036 (13)0.00884 (11)0.03503 (7)0.0280 (2)
N20.02304 (15)−0.19222 (14)−0.10135 (10)0.0405 (3)
O1−0.14751 (19)−0.26911 (18)0.08517 (13)0.0783 (6)
O20.24185 (12)−0.10349 (10)0.16359 (7)0.0339 (2)
H20.3065−0.13860.14040.051*
O30.14813 (16)−0.28697 (11)0.06474 (9)0.0464 (3)
H30.1156−0.33920.03310.070*
O40.01453 (17)−0.14460 (16)−0.17197 (9)0.0568 (4)
O5−0.01833 (16)−0.30050 (13)−0.08714 (10)0.0559 (4)
S10.21819 (5)0.03237 (4)−0.13829 (2)0.04134 (11)
U11U22U33U12U13U23
C10.0308 (7)0.0277 (6)0.0257 (6)−0.0027 (5)0.0015 (5)0.0009 (5)
C20.0339 (7)0.0293 (7)0.0336 (7)−0.0048 (6)−0.0008 (6)−0.0018 (6)
C30.0317 (7)0.0334 (7)0.0295 (7)0.0016 (6)−0.0019 (6)−0.0056 (6)
C40.0297 (6)0.0302 (7)0.0262 (6)0.0051 (6)0.0003 (5)−0.0009 (5)
C50.0551 (11)0.0604 (12)0.0497 (10)−0.0134 (10)0.0204 (9)−0.0003 (9)
C60.0372 (8)0.0548 (11)0.0421 (9)−0.0125 (8)0.0044 (7)−0.0029 (8)
C70.0355 (8)0.0529 (10)0.0395 (8)−0.0020 (7)0.0064 (7)0.0023 (8)
C80.0355 (7)0.0361 (7)0.0262 (6)0.0027 (6)0.0047 (6)0.0031 (6)
C90.0557 (11)0.0398 (8)0.0359 (8)0.0028 (8)0.0116 (8)−0.0025 (7)
C100.0778 (16)0.0532 (11)0.0441 (10)0.0179 (11)0.0222 (10)−0.0019 (9)
C110.0537 (13)0.0828 (15)0.0625 (13)0.0234 (12)0.0275 (11)0.0038 (12)
C120.0374 (9)0.0844 (15)0.0616 (12)0.0002 (11)0.0152 (9)0.0022 (11)
C130.0357 (8)0.0300 (7)0.0297 (7)−0.0073 (6)0.0046 (6)−0.0022 (5)
C140.0445 (9)0.0487 (10)0.0408 (9)−0.0166 (8)−0.0042 (7)0.0046 (7)
C150.0618 (12)0.0596 (11)0.0462 (10)−0.0313 (10)−0.0019 (10)−0.0048 (10)
C160.0737 (14)0.0452 (11)0.0626 (12)−0.0282 (10)0.0175 (11)−0.0168 (9)
C170.0615 (13)0.0334 (8)0.0749 (14)−0.0024 (9)0.0114 (11)−0.0033 (9)
C180.0438 (10)0.0353 (8)0.0498 (10)0.0015 (7)0.0015 (8)−0.0031 (7)
N10.0304 (6)0.0273 (5)0.0262 (5)−0.0031 (5)0.0021 (5)−0.0003 (4)
N20.0346 (7)0.0460 (8)0.0409 (8)0.0039 (6)−0.0072 (6)−0.0161 (6)
O10.0633 (10)0.0836 (12)0.0880 (12)−0.0434 (10)0.0184 (9)−0.0231 (10)
O20.0361 (6)0.0368 (5)0.0288 (5)0.0014 (5)−0.0028 (4)0.0014 (4)
O30.0615 (8)0.0269 (5)0.0507 (7)0.0006 (5)−0.0068 (6)−0.0009 (5)
O40.0583 (9)0.0755 (10)0.0365 (7)0.0049 (8)−0.0143 (6)−0.0108 (6)
O50.0563 (8)0.0461 (7)0.0652 (9)−0.0123 (6)−0.0069 (7)−0.0198 (7)
S10.0506 (2)0.0458 (2)0.02760 (17)0.00591 (19)0.00479 (17)0.00507 (16)
C1—O21.3802 (18)C10—C111.383 (4)
C1—N11.5030 (18)C10—H100.9300
C1—C81.520 (2)C11—C121.373 (4)
C1—C21.569 (2)C11—H110.9300
C2—O31.409 (2)C12—H120.9300
C2—C31.499 (2)C13—C181.382 (2)
C2—C61.533 (2)C13—C141.388 (2)
C3—N21.3811 (19)C13—N11.4377 (18)
C3—C41.385 (2)C14—C151.387 (3)
C4—N11.3567 (18)C14—H140.9300
C4—S11.7304 (15)C15—C161.371 (3)
C5—S11.807 (2)C15—H150.9300
C5—H5A0.9600C16—C171.386 (4)
C5—H5B0.9600C16—H160.9300
C5—H5C0.9600C17—C181.391 (3)
C6—O11.202 (2)C17—H170.9300
C6—C71.474 (3)C18—H180.9300
C7—C81.389 (2)N2—O41.234 (2)
C7—C121.398 (3)N2—O51.266 (2)
C8—C91.389 (2)O2—H20.8200
C9—C101.391 (3)O3—H30.8200
C9—H90.9300
O2—C1—N1112.11 (12)C11—C10—C9122.07 (19)
O2—C1—C8109.23 (12)C11—C10—H10119.0
N1—C1—C8112.26 (11)C9—C10—H10119.0
O2—C1—C2115.02 (12)C12—C11—C10120.5 (2)
N1—C1—C2103.76 (11)C12—C11—H11119.7
C8—C1—C2104.18 (12)C10—C11—H11119.7
O3—C2—C3114.69 (13)C11—C12—C7118.1 (2)
O3—C2—C6112.16 (14)C11—C12—H12121.0
C3—C2—C6111.79 (14)C7—C12—H12121.0
O3—C2—C1111.66 (13)C18—C13—C14120.66 (15)
C3—C2—C1101.07 (12)C18—C13—N1119.86 (15)
C6—C2—C1104.46 (13)C14—C13—N1119.39 (15)
N2—C3—C4124.50 (14)C15—C14—C13119.01 (19)
N2—C3—C2121.85 (14)C15—C14—H14120.5
C4—C3—C2111.73 (13)C13—C14—H14120.5
N1—C4—C3110.08 (13)C16—C15—C14120.83 (19)
N1—C4—S1125.85 (11)C16—C15—H15119.6
C3—C4—S1123.82 (11)C14—C15—H15119.6
S1—C5—H5A109.5C15—C16—C17120.00 (17)
S1—C5—H5B109.5C15—C16—H16120.0
H5A—C5—H5B109.5C17—C16—H16120.0
S1—C5—H5C109.5C16—C17—C18120.0 (2)
H5A—C5—H5C109.5C16—C17—H17120.0
H5B—C5—H5C109.5C18—C17—H17120.0
O1—C6—C7127.37 (19)C13—C18—C17119.48 (18)
O1—C6—C2125.13 (19)C13—C18—H18120.3
C7—C6—C2107.41 (14)C17—C18—H18120.3
C8—C7—C12121.52 (18)C4—N1—C13125.54 (12)
C8—C7—C6110.28 (15)C4—N1—C1110.81 (11)
C12—C7—C6128.00 (18)C13—N1—C1118.38 (11)
C7—C8—C9120.20 (16)O4—N2—O5122.11 (15)
C7—C8—C1111.24 (14)O4—N2—C3120.10 (15)
C9—C8—C1128.48 (15)O5—N2—C3117.78 (16)
C8—C9—C10117.6 (2)C1—O2—H2109.5
C8—C9—H9121.2C2—O3—H3109.5
C10—C9—H9121.2C4—S1—C5101.78 (8)
O2—C1—C2—O3−15.37 (18)N1—C1—C8—C9−64.8 (2)
N1—C1—C2—O3107.44 (14)C2—C1—C8—C9−176.43 (15)
C8—C1—C2—O3−134.90 (13)C7—C8—C9—C10−1.7 (3)
O2—C1—C2—C3−137.77 (13)C1—C8—C9—C10−178.21 (16)
N1—C1—C2—C3−14.95 (14)C8—C9—C10—C110.5 (3)
C8—C1—C2—C3102.70 (13)C9—C10—C11—C121.2 (4)
O2—C1—C2—C6106.06 (15)C10—C11—C12—C7−1.7 (4)
N1—C1—C2—C6−131.12 (13)C8—C7—C12—C110.4 (3)
C8—C1—C2—C6−13.47 (16)C6—C7—C12—C11174.7 (2)
O3—C2—C3—N259.5 (2)C18—C13—C14—C151.8 (3)
C6—C2—C3—N2−69.58 (19)N1—C13—C14—C15−174.80 (16)
C1—C2—C3—N2179.80 (14)C13—C14—C15—C16−2.6 (3)
O3—C2—C3—C4−105.35 (15)C14—C15—C16—C171.3 (3)
C6—C2—C3—C4125.53 (15)C15—C16—C17—C180.9 (3)
C1—C2—C3—C414.91 (16)C14—C13—C18—C170.3 (3)
N2—C3—C4—N1−173.08 (14)N1—C13—C18—C17176.95 (17)
C2—C3—C4—N1−8.67 (18)C16—C17—C18—C13−1.7 (3)
N2—C3—C4—S11.5 (2)C3—C4—N1—C13−156.00 (14)
C2—C3—C4—S1165.92 (11)S1—C4—N1—C1329.5 (2)
O3—C2—C6—O1−40.0 (3)C3—C4—N1—C1−2.30 (16)
C3—C2—C6—O190.4 (2)S1—C4—N1—C1−176.76 (11)
C1—C2—C6—O1−161.1 (2)C18—C13—N1—C439.6 (2)
O3—C2—C6—C7136.79 (15)C14—C13—N1—C4−143.72 (16)
C3—C2—C6—C7−92.78 (16)C18—C13—N1—C1−112.28 (17)
C1—C2—C6—C715.68 (18)C14—C13—N1—C164.36 (19)
O1—C6—C7—C8164.5 (2)O2—C1—N1—C4136.14 (13)
C2—C6—C7—C8−12.2 (2)C8—C1—N1—C4−100.46 (14)
O1—C6—C7—C12−10.3 (4)C2—C1—N1—C411.43 (15)
C2—C6—C7—C12173.0 (2)O2—C1—N1—C13−68.05 (16)
C12—C7—C8—C91.3 (3)C8—C1—N1—C1355.35 (17)
C6—C7—C8—C9−173.89 (16)C2—C1—N1—C13167.24 (13)
C12—C7—C8—C1178.35 (18)C4—C3—N2—O4−23.3 (2)
C6—C7—C8—C13.1 (2)C2—C3—N2—O4173.83 (16)
O2—C1—C8—C7−116.54 (15)C4—C3—N2—O5158.10 (16)
N1—C1—C8—C7118.47 (14)C2—C3—N2—O5−4.8 (2)
C2—C1—C8—C76.84 (17)N1—C4—S1—C528.50 (16)
O2—C1—C8—C960.2 (2)C3—C4—S1—C5−145.23 (14)
D—H···AD—HH···AD···AD—H···A
O3—H3···O50.822.342.895 (2)126
O2—H2···O5i0.822.002.8155 (18)171
C11—H11···O4ii0.932.513.423 (3)166
C9—H9···Cg10.932.893.545 (2)129
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C13–C18 benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3⋯O50.822.342.895 (2)126
O2—H2⋯O5i 0.822.002.8155 (18)171
C11—H11⋯O4ii 0.932.513.423 (3)166
C9—H9⋯Cg10.932.893.545 (2)129

Symmetry codes: (i) ; (ii) .

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4.  Structure validation in chemical crystallography.

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