| Literature DB >> 24454219 |
R A Nagalakshmi1, J Suresh1, V Jeyachandran2, R Ranjith Kumar2, P L Nilantha Lakshman3.
Abstract
In the title compound, C18H14N2O5, the pyrrolidine ring adopts a shallow envelope conformation, with the C atom bearing the OH group (and remote from the N atom) displaced by 0.257 (2) Å from the other atoms. The cyclo-pentane ring has a twisted conformation about the C-C bond bearing one =O and one -OH grouping. The dihedral angle between the five-membered rings (all atoms) is 65.54 (9)° and the OH groups lie to the same side of the ring-junction. The mol-ecular structure features a weak intra-molecular O-H⋯O bond and a possible C-H⋯π inter-action. In the crystal, the mol-ecules are linked into [010] chains by O-H⋯O hydrogen bonds. Weak C-H⋯O bonds connect the chains into (100) sheets.Entities:
Year: 2013 PMID: 24454219 PMCID: PMC3885043 DOI: 10.1107/S1600536813029577
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H14N2O5S | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 2000 reflections |
| θ = 2–31° | |
| µ = 0.23 mm−1 | |
| Block, colourless | |
| 0.21 × 0.19 × 0.18 mm |
| Bruker Kappa APEXII diffractometer | 4140 independent reflections |
| Radiation source: fine-focus sealed tube | 3800 reflections with |
| Graphite monochromator | |
| Detector resolution: 0 pixels mm-1 | θmax = 28.3°, θmin = 2.3° |
| ω and φ scans | |
| Absorption correction: multi-scan ( | |
| 9249 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 4140 reflections | Δρmax = 0.23 e Å−3 |
| 236 parameters | Δρmin = −0.19 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 000 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.00 (6) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.planes. |
| Refinement. Refinement of |
| C1 | 0.14622 (15) | −0.06791 (13) | 0.10358 (9) | 0.0281 (3) | |
| C2 | 0.07556 (17) | −0.17588 (14) | 0.05420 (10) | 0.0322 (3) | |
| C3 | 0.07626 (16) | −0.12630 (14) | −0.03423 (9) | 0.0315 (3) | |
| C4 | 0.16436 (15) | −0.02676 (14) | −0.04222 (9) | 0.0287 (3) | |
| C5 | 0.3928 (2) | 0.0803 (2) | −0.11431 (14) | 0.0551 (5) | |
| H5A | 0.4342 | 0.1155 | −0.1639 | 0.083* | |
| H5B | 0.4461 | 0.0106 | −0.0964 | 0.083* | |
| H5C | 0.3910 | 0.1403 | −0.0699 | 0.083* | |
| C6 | −0.07130 (19) | −0.18225 (19) | 0.09064 (12) | 0.0447 (4) | |
| C7 | −0.09638 (18) | −0.06680 (17) | 0.13669 (12) | 0.0426 (4) | |
| C8 | 0.02672 (16) | −0.00269 (14) | 0.14699 (9) | 0.0326 (3) | |
| C9 | 0.0300 (2) | 0.10338 (17) | 0.19568 (11) | 0.0438 (4) | |
| H9 | 0.1121 | 0.1461 | 0.2044 | 0.053* | |
| C10 | −0.0939 (3) | 0.1434 (2) | 0.23091 (13) | 0.0583 (6) | |
| H10 | −0.0941 | 0.2146 | 0.2633 | 0.070* | |
| C11 | −0.2169 (3) | 0.0807 (2) | 0.21922 (15) | 0.0663 (6) | |
| H11 | −0.2982 | 0.1110 | 0.2428 | 0.080* | |
| C12 | −0.2199 (2) | −0.0259 (2) | 0.17303 (15) | 0.0612 (5) | |
| H12 | −0.3018 | −0.0697 | 0.1661 | 0.073* | |
| C13 | 0.25948 (16) | 0.12942 (13) | 0.05639 (10) | 0.0318 (3) | |
| C14 | 0.3684 (2) | 0.14182 (18) | 0.11299 (11) | 0.0446 (4) | |
| H14 | 0.4143 | 0.0729 | 0.1335 | 0.054* | |
| C15 | 0.4078 (2) | 0.2584 (2) | 0.13854 (14) | 0.0559 (5) | |
| H15 | 0.4781 | 0.2674 | 0.1782 | 0.067* | |
| C16 | 0.3443 (3) | 0.36057 (19) | 0.10607 (15) | 0.0605 (6) | |
| H16 | 0.3729 | 0.4383 | 0.1229 | 0.073* | |
| C17 | 0.2376 (2) | 0.34801 (17) | 0.04819 (16) | 0.0566 (5) | |
| H17 | 0.1954 | 0.4173 | 0.0255 | 0.068* | |
| C18 | 0.1936 (2) | 0.23165 (15) | 0.02401 (12) | 0.0430 (4) | |
| H18 | 0.1203 | 0.2227 | −0.0136 | 0.052* | |
| N1 | 0.21036 (13) | 0.00884 (11) | 0.03503 (7) | 0.0280 (2) | |
| N2 | 0.02304 (15) | −0.19222 (14) | −0.10135 (10) | 0.0405 (3) | |
| O1 | −0.14751 (19) | −0.26911 (18) | 0.08517 (13) | 0.0783 (6) | |
| O2 | 0.24185 (12) | −0.10349 (10) | 0.16359 (7) | 0.0339 (2) | |
| H2 | 0.3065 | −0.1386 | 0.1404 | 0.051* | |
| O3 | 0.14813 (16) | −0.28697 (11) | 0.06474 (9) | 0.0464 (3) | |
| H3 | 0.1156 | −0.3392 | 0.0331 | 0.070* | |
| O4 | 0.01453 (17) | −0.14460 (16) | −0.17197 (9) | 0.0568 (4) | |
| O5 | −0.01833 (16) | −0.30050 (13) | −0.08714 (10) | 0.0559 (4) | |
| S1 | 0.21819 (5) | 0.03237 (4) | −0.13829 (2) | 0.04134 (11) |
| C1 | 0.0308 (7) | 0.0277 (6) | 0.0257 (6) | −0.0027 (5) | 0.0015 (5) | 0.0009 (5) |
| C2 | 0.0339 (7) | 0.0293 (7) | 0.0336 (7) | −0.0048 (6) | −0.0008 (6) | −0.0018 (6) |
| C3 | 0.0317 (7) | 0.0334 (7) | 0.0295 (7) | 0.0016 (6) | −0.0019 (6) | −0.0056 (6) |
| C4 | 0.0297 (6) | 0.0302 (7) | 0.0262 (6) | 0.0051 (6) | 0.0003 (5) | −0.0009 (5) |
| C5 | 0.0551 (11) | 0.0604 (12) | 0.0497 (10) | −0.0134 (10) | 0.0204 (9) | −0.0003 (9) |
| C6 | 0.0372 (8) | 0.0548 (11) | 0.0421 (9) | −0.0125 (8) | 0.0044 (7) | −0.0029 (8) |
| C7 | 0.0355 (8) | 0.0529 (10) | 0.0395 (8) | −0.0020 (7) | 0.0064 (7) | 0.0023 (8) |
| C8 | 0.0355 (7) | 0.0361 (7) | 0.0262 (6) | 0.0027 (6) | 0.0047 (6) | 0.0031 (6) |
| C9 | 0.0557 (11) | 0.0398 (8) | 0.0359 (8) | 0.0028 (8) | 0.0116 (8) | −0.0025 (7) |
| C10 | 0.0778 (16) | 0.0532 (11) | 0.0441 (10) | 0.0179 (11) | 0.0222 (10) | −0.0019 (9) |
| C11 | 0.0537 (13) | 0.0828 (15) | 0.0625 (13) | 0.0234 (12) | 0.0275 (11) | 0.0038 (12) |
| C12 | 0.0374 (9) | 0.0844 (15) | 0.0616 (12) | 0.0002 (11) | 0.0152 (9) | 0.0022 (11) |
| C13 | 0.0357 (8) | 0.0300 (7) | 0.0297 (7) | −0.0073 (6) | 0.0046 (6) | −0.0022 (5) |
| C14 | 0.0445 (9) | 0.0487 (10) | 0.0408 (9) | −0.0166 (8) | −0.0042 (7) | 0.0046 (7) |
| C15 | 0.0618 (12) | 0.0596 (11) | 0.0462 (10) | −0.0313 (10) | −0.0019 (10) | −0.0048 (10) |
| C16 | 0.0737 (14) | 0.0452 (11) | 0.0626 (12) | −0.0282 (10) | 0.0175 (11) | −0.0168 (9) |
| C17 | 0.0615 (13) | 0.0334 (8) | 0.0749 (14) | −0.0024 (9) | 0.0114 (11) | −0.0033 (9) |
| C18 | 0.0438 (10) | 0.0353 (8) | 0.0498 (10) | 0.0015 (7) | 0.0015 (8) | −0.0031 (7) |
| N1 | 0.0304 (6) | 0.0273 (5) | 0.0262 (5) | −0.0031 (5) | 0.0021 (5) | −0.0003 (4) |
| N2 | 0.0346 (7) | 0.0460 (8) | 0.0409 (8) | 0.0039 (6) | −0.0072 (6) | −0.0161 (6) |
| O1 | 0.0633 (10) | 0.0836 (12) | 0.0880 (12) | −0.0434 (10) | 0.0184 (9) | −0.0231 (10) |
| O2 | 0.0361 (6) | 0.0368 (5) | 0.0288 (5) | 0.0014 (5) | −0.0028 (4) | 0.0014 (4) |
| O3 | 0.0615 (8) | 0.0269 (5) | 0.0507 (7) | 0.0006 (5) | −0.0068 (6) | −0.0009 (5) |
| O4 | 0.0583 (9) | 0.0755 (10) | 0.0365 (7) | 0.0049 (8) | −0.0143 (6) | −0.0108 (6) |
| O5 | 0.0563 (8) | 0.0461 (7) | 0.0652 (9) | −0.0123 (6) | −0.0069 (7) | −0.0198 (7) |
| S1 | 0.0506 (2) | 0.0458 (2) | 0.02760 (17) | 0.00591 (19) | 0.00479 (17) | 0.00507 (16) |
| C1—O2 | 1.3802 (18) | C10—C11 | 1.383 (4) |
| C1—N1 | 1.5030 (18) | C10—H10 | 0.9300 |
| C1—C8 | 1.520 (2) | C11—C12 | 1.373 (4) |
| C1—C2 | 1.569 (2) | C11—H11 | 0.9300 |
| C2—O3 | 1.409 (2) | C12—H12 | 0.9300 |
| C2—C3 | 1.499 (2) | C13—C18 | 1.382 (2) |
| C2—C6 | 1.533 (2) | C13—C14 | 1.388 (2) |
| C3—N2 | 1.3811 (19) | C13—N1 | 1.4377 (18) |
| C3—C4 | 1.385 (2) | C14—C15 | 1.387 (3) |
| C4—N1 | 1.3567 (18) | C14—H14 | 0.9300 |
| C4—S1 | 1.7304 (15) | C15—C16 | 1.371 (3) |
| C5—S1 | 1.807 (2) | C15—H15 | 0.9300 |
| C5—H5A | 0.9600 | C16—C17 | 1.386 (4) |
| C5—H5B | 0.9600 | C16—H16 | 0.9300 |
| C5—H5C | 0.9600 | C17—C18 | 1.391 (3) |
| C6—O1 | 1.202 (2) | C17—H17 | 0.9300 |
| C6—C7 | 1.474 (3) | C18—H18 | 0.9300 |
| C7—C8 | 1.389 (2) | N2—O4 | 1.234 (2) |
| C7—C12 | 1.398 (3) | N2—O5 | 1.266 (2) |
| C8—C9 | 1.389 (2) | O2—H2 | 0.8200 |
| C9—C10 | 1.391 (3) | O3—H3 | 0.8200 |
| C9—H9 | 0.9300 | ||
| O2—C1—N1 | 112.11 (12) | C11—C10—C9 | 122.07 (19) |
| O2—C1—C8 | 109.23 (12) | C11—C10—H10 | 119.0 |
| N1—C1—C8 | 112.26 (11) | C9—C10—H10 | 119.0 |
| O2—C1—C2 | 115.02 (12) | C12—C11—C10 | 120.5 (2) |
| N1—C1—C2 | 103.76 (11) | C12—C11—H11 | 119.7 |
| C8—C1—C2 | 104.18 (12) | C10—C11—H11 | 119.7 |
| O3—C2—C3 | 114.69 (13) | C11—C12—C7 | 118.1 (2) |
| O3—C2—C6 | 112.16 (14) | C11—C12—H12 | 121.0 |
| C3—C2—C6 | 111.79 (14) | C7—C12—H12 | 121.0 |
| O3—C2—C1 | 111.66 (13) | C18—C13—C14 | 120.66 (15) |
| C3—C2—C1 | 101.07 (12) | C18—C13—N1 | 119.86 (15) |
| C6—C2—C1 | 104.46 (13) | C14—C13—N1 | 119.39 (15) |
| N2—C3—C4 | 124.50 (14) | C15—C14—C13 | 119.01 (19) |
| N2—C3—C2 | 121.85 (14) | C15—C14—H14 | 120.5 |
| C4—C3—C2 | 111.73 (13) | C13—C14—H14 | 120.5 |
| N1—C4—C3 | 110.08 (13) | C16—C15—C14 | 120.83 (19) |
| N1—C4—S1 | 125.85 (11) | C16—C15—H15 | 119.6 |
| C3—C4—S1 | 123.82 (11) | C14—C15—H15 | 119.6 |
| S1—C5—H5A | 109.5 | C15—C16—C17 | 120.00 (17) |
| S1—C5—H5B | 109.5 | C15—C16—H16 | 120.0 |
| H5A—C5—H5B | 109.5 | C17—C16—H16 | 120.0 |
| S1—C5—H5C | 109.5 | C16—C17—C18 | 120.0 (2) |
| H5A—C5—H5C | 109.5 | C16—C17—H17 | 120.0 |
| H5B—C5—H5C | 109.5 | C18—C17—H17 | 120.0 |
| O1—C6—C7 | 127.37 (19) | C13—C18—C17 | 119.48 (18) |
| O1—C6—C2 | 125.13 (19) | C13—C18—H18 | 120.3 |
| C7—C6—C2 | 107.41 (14) | C17—C18—H18 | 120.3 |
| C8—C7—C12 | 121.52 (18) | C4—N1—C13 | 125.54 (12) |
| C8—C7—C6 | 110.28 (15) | C4—N1—C1 | 110.81 (11) |
| C12—C7—C6 | 128.00 (18) | C13—N1—C1 | 118.38 (11) |
| C7—C8—C9 | 120.20 (16) | O4—N2—O5 | 122.11 (15) |
| C7—C8—C1 | 111.24 (14) | O4—N2—C3 | 120.10 (15) |
| C9—C8—C1 | 128.48 (15) | O5—N2—C3 | 117.78 (16) |
| C8—C9—C10 | 117.6 (2) | C1—O2—H2 | 109.5 |
| C8—C9—H9 | 121.2 | C2—O3—H3 | 109.5 |
| C10—C9—H9 | 121.2 | C4—S1—C5 | 101.78 (8) |
| O2—C1—C2—O3 | −15.37 (18) | N1—C1—C8—C9 | −64.8 (2) |
| N1—C1—C2—O3 | 107.44 (14) | C2—C1—C8—C9 | −176.43 (15) |
| C8—C1—C2—O3 | −134.90 (13) | C7—C8—C9—C10 | −1.7 (3) |
| O2—C1—C2—C3 | −137.77 (13) | C1—C8—C9—C10 | −178.21 (16) |
| N1—C1—C2—C3 | −14.95 (14) | C8—C9—C10—C11 | 0.5 (3) |
| C8—C1—C2—C3 | 102.70 (13) | C9—C10—C11—C12 | 1.2 (4) |
| O2—C1—C2—C6 | 106.06 (15) | C10—C11—C12—C7 | −1.7 (4) |
| N1—C1—C2—C6 | −131.12 (13) | C8—C7—C12—C11 | 0.4 (3) |
| C8—C1—C2—C6 | −13.47 (16) | C6—C7—C12—C11 | 174.7 (2) |
| O3—C2—C3—N2 | 59.5 (2) | C18—C13—C14—C15 | 1.8 (3) |
| C6—C2—C3—N2 | −69.58 (19) | N1—C13—C14—C15 | −174.80 (16) |
| C1—C2—C3—N2 | 179.80 (14) | C13—C14—C15—C16 | −2.6 (3) |
| O3—C2—C3—C4 | −105.35 (15) | C14—C15—C16—C17 | 1.3 (3) |
| C6—C2—C3—C4 | 125.53 (15) | C15—C16—C17—C18 | 0.9 (3) |
| C1—C2—C3—C4 | 14.91 (16) | C14—C13—C18—C17 | 0.3 (3) |
| N2—C3—C4—N1 | −173.08 (14) | N1—C13—C18—C17 | 176.95 (17) |
| C2—C3—C4—N1 | −8.67 (18) | C16—C17—C18—C13 | −1.7 (3) |
| N2—C3—C4—S1 | 1.5 (2) | C3—C4—N1—C13 | −156.00 (14) |
| C2—C3—C4—S1 | 165.92 (11) | S1—C4—N1—C13 | 29.5 (2) |
| O3—C2—C6—O1 | −40.0 (3) | C3—C4—N1—C1 | −2.30 (16) |
| C3—C2—C6—O1 | 90.4 (2) | S1—C4—N1—C1 | −176.76 (11) |
| C1—C2—C6—O1 | −161.1 (2) | C18—C13—N1—C4 | 39.6 (2) |
| O3—C2—C6—C7 | 136.79 (15) | C14—C13—N1—C4 | −143.72 (16) |
| C3—C2—C6—C7 | −92.78 (16) | C18—C13—N1—C1 | −112.28 (17) |
| C1—C2—C6—C7 | 15.68 (18) | C14—C13—N1—C1 | 64.36 (19) |
| O1—C6—C7—C8 | 164.5 (2) | O2—C1—N1—C4 | 136.14 (13) |
| C2—C6—C7—C8 | −12.2 (2) | C8—C1—N1—C4 | −100.46 (14) |
| O1—C6—C7—C12 | −10.3 (4) | C2—C1—N1—C4 | 11.43 (15) |
| C2—C6—C7—C12 | 173.0 (2) | O2—C1—N1—C13 | −68.05 (16) |
| C12—C7—C8—C9 | 1.3 (3) | C8—C1—N1—C13 | 55.35 (17) |
| C6—C7—C8—C9 | −173.89 (16) | C2—C1—N1—C13 | 167.24 (13) |
| C12—C7—C8—C1 | 178.35 (18) | C4—C3—N2—O4 | −23.3 (2) |
| C6—C7—C8—C1 | 3.1 (2) | C2—C3—N2—O4 | 173.83 (16) |
| O2—C1—C8—C7 | −116.54 (15) | C4—C3—N2—O5 | 158.10 (16) |
| N1—C1—C8—C7 | 118.47 (14) | C2—C3—N2—O5 | −4.8 (2) |
| C2—C1—C8—C7 | 6.84 (17) | N1—C4—S1—C5 | 28.50 (16) |
| O2—C1—C8—C9 | 60.2 (2) | C3—C4—S1—C5 | −145.23 (14) |
| H··· | ||||
| O3—H3···O5 | 0.82 | 2.34 | 2.895 (2) | 126 |
| O2—H2···O5i | 0.82 | 2.00 | 2.8155 (18) | 171 |
| C11—H11···O4ii | 0.93 | 2.51 | 3.423 (3) | 166 |
| C9—H9··· | 0.93 | 2.89 | 3.545 (2) | 129 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C13–C18 benzene ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H3⋯O5 | 0.82 | 2.34 | 2.895 (2) | 126 |
| O2—H2⋯O5i | 0.82 | 2.00 | 2.8155 (18) | 171 |
| C11—H11⋯O4ii | 0.93 | 2.51 | 3.423 (3) | 166 |
| C9—H9⋯ | 0.93 | 2.89 | 3.545 (2) | 129 |
Symmetry codes: (i) ; (ii) .