Literature DB >> 24454162

Poly[[(μ2-4,4'-bipyridyl-κ(2) N:N')bis-{μ2-N-[2-(2-hy-droxy-benzo-yl)carbamo-thio-yl]acetamidato-κ(4) O,N,O':S}bis-(nitrato-κ(2) O,O')dicadmium] di-methyl-formamide tetra-solvate].

Ming-Hua You1, Fo-Jun Li1, Xiao-Ping Yang1, Xu-Xiang Lin1, Hua-Yan Ye1.   

Abstract

The asymmetric unit of the title complex, {[Cd2(C10H10N3O3S)2(C10H8N2)(NO3)2]·4C3H7NO} n , consists of one Cd(II) cation, one N-[2-(2-hy-droxy-benzo-yl)carbamo-thio-yl]acetamidate ligand, half a 4,4'-bipyridyl ligand, one coordinating nitrate anion and two di-methyl-formamide solvent mol-ecules of crystallization. The bipyridine ligand is completed by inversion symmetry. The metal cation exhibits a distorted penta-gonal-bipyramidal coordination geometry provided by two O and one N atoms of the thio-semicarbazide ligand, two O atoms of the nitrate anion, one S atom of a neighbouring thio-semicarbazide ligand and one 4,4'-bi-pyridine N atom. The bridging role of the thio-semicarbazide ligand through the S atom leads to centrosymmetric binuclear units, which are further linked by 4,4'-bi-pyridine units, forming polymeric chains extending along the b-axis direction. An intra-molecular N-H⋯O hydrogen bond occurs. The crystal structure also features N-H⋯O and O-H⋯O hydrogen bonds, leading to the formation of a three-dimensional network.

Entities:  

Year:  2013        PMID: 24454162      PMCID: PMC3884987          DOI: 10.1107/S1600536813030055

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the properties and applications of thio­semicarbazone complexes, see: Quiroga & Ranninger (2004 ▶); Kasuga et al. (2003 ▶); Floquet et al. (2009 ▶); Hassanien et al. (2008 ▶); Latheef et al. (2006 ▶); Babb et al. (2003 ▶). For related structures, see: Ke et al. (2007 ▶); Wang et al. (2010 ▶); Liu et al. (2013 ▶). For the synthesis of the N-(2-(2-hy­droxy­benzo­yl)carbamo­thio­yl)acetamide ligand, see: Wang et al. (2000 ▶).

Experimental

Crystal data

[Cd2(C10H10N3O3S)2(C10H8N2)(NO3)2]·4C3H7NO M = 1301.93 Monoclinic, a = 13.831 (3) Å b = 15.280 (3) Å c = 14.363 (3) Å β = 110.55 (3)° V = 2842.4 (12) Å3 Z = 2 Mo Kα radiation μ = 0.90 mm−1 T = 293 K 0.30 × 0.18 × 0.08 mm

Data collection

Rigaku Saturn 724+ CCD diffractometer Absorption correction: numerical (CrystalClear; Rigaku, 2007 ▶) T min = 0.813, T max = 0.946 18197 measured reflections 4980 independent reflections 4753 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.141 S = 1.28 4980 reflections 349 parameters H-atom parameters constrained Δρmax = 0.70 e Å−3 Δρmin = −0.63 e Å−3 Data collection: CrystalClear (Rigaku, 2007 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813030055/rz5087sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813030055/rz5087Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd2(C10H10N3O3S)2(C10H8N2)(NO3)2]·4C3H7NOF(000) = 1324
Mr = 1301.93Dx = 1.521 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 10007 reflections
a = 13.831 (3) Åθ = 3.0–27.5°
b = 15.280 (3) ŵ = 0.90 mm1
c = 14.363 (3) ÅT = 293 K
β = 110.55 (3)°Block, colourless
V = 2842.4 (12) Å30.30 × 0.18 × 0.08 mm
Z = 2
Rigaku Saturn 724+ CCD diffractometer4980 independent reflections
Radiation source: fine-focus sealed tube4753 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.043
ω scans at fixed χ = 45°θmax = 25.0°, θmin = 3.0°
Absorption correction: numerical (CrystalClear; Rigaku, 2007)h = −16→16
Tmin = 0.813, Tmax = 0.946k = −18→18
18197 measured reflectionsl = −16→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.141H-atom parameters constrained
S = 1.28w = 1/[σ2(Fo2) + (0.0474P)2 + 4.0842P] where P = (Fo2 + 2Fc2)/3
4980 reflections(Δ/σ)max < 0.001
349 parametersΔρmax = 0.70 e Å3
0 restraintsΔρmin = −0.63 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd10.93079 (3)0.13619 (3)0.35688 (3)0.05085 (16)
N40.9607 (3)0.2863 (3)0.3953 (4)0.0603 (11)
O20.8129 (3)0.1541 (3)0.4400 (3)0.0618 (10)
C40.8420 (4)0.1339 (3)0.5294 (4)0.0520 (12)
N21.0120 (3)0.1051 (3)0.5329 (3)0.0482 (10)
C60.7984 (5)0.1324 (4)0.6899 (5)0.0704 (17)
O40.7810 (3)0.1911 (3)0.2065 (3)0.0824 (13)
C50.7705 (4)0.1409 (4)0.5870 (5)0.0631 (15)
O60.8984 (3)0.1126 (4)0.7441 (3)0.0897 (15)
H60.90430.10490.80240.108*
O50.8031 (4)0.2180 (5)0.0673 (4)0.118 (2)
N50.8361 (4)0.1955 (4)0.1550 (4)0.0747 (14)
O30.9307 (3)0.1752 (4)0.1959 (3)0.0837 (13)
C70.7240 (6)0.1425 (6)0.7354 (6)0.097 (2)
H70.74350.13750.80410.116*
C100.6671 (5)0.1583 (6)0.5319 (6)0.094 (2)
H100.64650.16410.46320.113*
C80.6238 (7)0.1596 (8)0.6796 (8)0.129 (4)
H80.57500.16620.71010.154*
C90.5949 (6)0.1669 (8)0.5777 (8)0.131 (4)
H90.52620.17780.53950.157*
O11.1075 (3)0.1222 (3)0.3888 (3)0.0616 (10)
N11.1819 (3)0.0725 (3)0.5489 (3)0.0519 (10)
H11.24020.05410.58950.062*
N30.9386 (3)0.1056 (3)0.5792 (3)0.0510 (10)
H30.95510.08790.63960.061*
C31.1007 (4)0.0711 (3)0.5871 (4)0.0470 (11)
C130.9920 (4)0.4559 (3)0.4777 (4)0.0540 (12)
C21.1834 (4)0.0978 (4)0.4592 (4)0.0542 (13)
N60.5321 (4)0.1122 (4)0.2567 (5)0.0908 (18)
C150.8837 (5)0.3441 (4)0.3760 (5)0.0714 (17)
H150.81820.32720.33430.086*
C140.8962 (4)0.4273 (4)0.4146 (5)0.0675 (16)
H140.83980.46490.39830.081*
C160.6130 (4)0.0601 (5)0.2860 (5)0.0717 (17)
H160.67190.07900.27470.086*
C111.0539 (5)0.3136 (4)0.4533 (6)0.089 (2)
H111.10930.27520.46670.107*
C121.0716 (5)0.3966 (4)0.4944 (6)0.093 (2)
H121.13830.41260.53400.111*
C170.5353 (8)0.1979 (6)0.2137 (8)0.126 (3)
H17A0.60290.20800.21140.189*
H17B0.51980.24220.25380.189*
H17C0.48520.20020.14760.189*
C180.4398 (7)0.0860 (10)0.2729 (12)0.218 (8)
H18A0.45750.05040.33160.327*
H18B0.39700.05290.21670.327*
H18C0.40300.13690.28110.327*
O70.6180 (3)−0.0114 (4)0.3271 (4)0.0868 (14)
C11.2880 (4)0.0956 (5)0.4484 (5)0.0683 (16)
H1A1.28570.05720.39480.103*
H1B1.33850.07480.50910.103*
H1C1.30620.15350.43440.103*
S11.12907 (10)0.02354 (9)0.70412 (10)0.0547 (3)
N70.5920 (7)0.3996 (9)0.5419 (6)0.167 (4)
C200.6425 (12)0.4109 (13)0.4690 (11)0.249 (9)
H20A0.59810.38960.40550.374*
H20B0.70620.37880.48990.374*
H20C0.65650.47190.46370.374*
C210.6531 (8)0.3997 (10)0.6491 (8)0.169 (5)
H21A0.60780.39280.68620.253*
H21B0.68970.45410.66680.253*
H21C0.70160.35220.66410.253*
O80.4333 (8)0.3831 (12)0.4272 (6)0.334 (11)
C190.4931 (10)0.3835 (13)0.5125 (8)0.235 (10)
H190.46580.37130.56170.282*
U11U22U33U12U13U23
Cd10.0399 (2)0.0541 (3)0.0550 (3)0.00047 (16)0.01226 (17)−0.00090 (17)
N40.050 (3)0.049 (3)0.074 (3)−0.001 (2)0.012 (2)−0.001 (2)
O20.044 (2)0.076 (3)0.063 (2)0.0082 (18)0.0158 (18)0.003 (2)
C40.038 (3)0.051 (3)0.065 (3)−0.001 (2)0.014 (2)−0.011 (3)
N20.036 (2)0.048 (2)0.062 (3)−0.0030 (18)0.0188 (19)−0.003 (2)
C60.054 (3)0.086 (4)0.080 (4)0.000 (3)0.034 (3)−0.010 (3)
O40.057 (2)0.107 (4)0.083 (3)−0.004 (2)0.024 (2)0.004 (3)
C50.049 (3)0.068 (4)0.076 (4)−0.003 (3)0.026 (3)−0.012 (3)
O60.057 (3)0.145 (5)0.070 (3)0.013 (3)0.027 (2)0.010 (3)
O50.082 (3)0.181 (6)0.073 (3)0.012 (4)0.007 (3)0.047 (4)
N50.064 (3)0.086 (4)0.064 (3)0.000 (3)0.011 (3)0.010 (3)
O30.054 (3)0.126 (4)0.068 (3)0.013 (3)0.016 (2)0.016 (3)
C70.082 (5)0.138 (7)0.089 (5)0.008 (5)0.052 (4)−0.006 (5)
C100.047 (4)0.147 (7)0.091 (5)0.008 (4)0.026 (3)−0.016 (5)
C80.074 (6)0.217 (12)0.118 (7)0.014 (6)0.062 (5)−0.008 (7)
C90.049 (4)0.228 (12)0.120 (7)0.025 (6)0.034 (4)−0.019 (8)
O10.043 (2)0.081 (3)0.059 (2)0.0057 (18)0.0148 (18)0.0052 (19)
N10.033 (2)0.056 (3)0.064 (3)0.0051 (18)0.0145 (19)0.001 (2)
N30.042 (2)0.058 (3)0.054 (2)0.0056 (19)0.0178 (19)−0.002 (2)
C30.038 (2)0.041 (3)0.058 (3)−0.001 (2)0.013 (2)−0.009 (2)
C130.042 (3)0.051 (3)0.063 (3)−0.001 (2)0.011 (2)0.002 (2)
C20.041 (3)0.052 (3)0.068 (3)−0.005 (2)0.017 (3)−0.007 (3)
N60.056 (3)0.108 (5)0.110 (5)0.027 (3)0.032 (3)0.027 (4)
C150.049 (3)0.061 (4)0.086 (4)0.003 (3)0.002 (3)−0.010 (3)
C140.048 (3)0.055 (3)0.086 (4)0.006 (3)0.007 (3)−0.004 (3)
C160.039 (3)0.102 (5)0.069 (4)0.004 (3)0.012 (3)−0.005 (4)
C110.051 (4)0.060 (4)0.133 (6)0.007 (3)0.003 (4)−0.024 (4)
C120.042 (3)0.064 (4)0.144 (7)−0.002 (3)−0.002 (4)−0.031 (4)
C170.126 (8)0.112 (7)0.150 (9)0.042 (6)0.061 (7)0.028 (7)
C180.066 (6)0.262 (16)0.35 (2)0.055 (8)0.103 (9)0.148 (15)
O70.056 (3)0.102 (4)0.096 (3)0.014 (2)0.019 (2)0.022 (3)
C10.042 (3)0.087 (4)0.081 (4)0.000 (3)0.028 (3)0.000 (3)
S10.0464 (7)0.0602 (8)0.0516 (7)0.0013 (6)0.0098 (6)−0.0056 (6)
N70.105 (6)0.306 (14)0.098 (6)−0.052 (8)0.043 (5)0.008 (7)
C200.192 (15)0.40 (3)0.210 (15)−0.070 (17)0.140 (13)0.001 (17)
C210.094 (7)0.279 (16)0.115 (8)−0.040 (9)0.012 (6)−0.018 (9)
O80.182 (9)0.72 (3)0.071 (5)−0.177 (13)0.015 (5)0.056 (9)
C190.119 (9)0.51 (3)0.070 (6)−0.087 (13)0.028 (6)0.031 (11)
Cd1—O12.332 (4)C13—C141.388 (7)
Cd1—O22.350 (4)C13—C13ii1.476 (10)
Cd1—N42.362 (5)C2—C11.509 (7)
Cd1—O32.387 (4)N6—C161.317 (8)
Cd1—N22.426 (4)N6—C181.433 (10)
Cd1—O42.553 (5)N6—C171.456 (10)
Cd1—S1i2.6270 (15)C15—C141.373 (8)
N4—C111.332 (7)C15—H150.9300
N4—C151.336 (7)C14—H140.9300
O2—C41.242 (7)C16—O71.232 (8)
C4—N31.346 (6)C16—H160.9300
C4—C51.499 (8)C11—C121.384 (9)
N2—C31.307 (6)C11—H110.9300
N2—N31.396 (5)C12—H120.9300
C6—O61.361 (8)C17—H17A0.9600
C6—C51.397 (9)C17—H17B0.9600
C6—C71.408 (9)C17—H17C0.9600
O4—N51.237 (6)C18—H18A0.9600
C5—C101.395 (9)C18—H18B0.9600
O6—H60.8200C18—H18C0.9600
O5—N51.229 (7)C1—H1A0.9600
N5—O31.270 (6)C1—H1B0.9600
C7—C81.361 (12)C1—H1C0.9600
C7—H70.9300S1—Cd1i2.6270 (15)
C10—C91.382 (10)N7—C191.305 (14)
C10—H100.9300N7—C201.458 (13)
C8—C91.380 (12)N7—C211.474 (12)
C8—H80.9300C20—H20A0.9600
C9—H90.9300C20—H20B0.9600
O1—C21.232 (6)C20—H20C0.9600
N1—C21.352 (7)C21—H21A0.9600
N1—C31.412 (6)C21—H21B0.9600
N1—H10.8600C21—H21C0.9600
N3—H30.8600O8—C191.214 (13)
C3—S11.745 (5)C19—H190.9300
C13—C121.381 (8)
O1—Cd1—O2140.93 (13)N2—C3—S1125.9 (4)
O1—Cd1—N487.55 (15)N1—C3—S1116.1 (3)
O2—Cd1—N482.21 (15)C12—C13—C14115.3 (5)
O1—Cd1—O381.83 (14)C12—C13—C13ii122.4 (6)
O2—Cd1—O3134.28 (14)C14—C13—C13ii122.3 (6)
N4—Cd1—O385.65 (18)O1—C2—N1125.1 (5)
O1—Cd1—N272.96 (13)O1—C2—C1119.6 (5)
O2—Cd1—N269.13 (13)N1—C2—C1115.3 (5)
N4—Cd1—N288.16 (15)C16—N6—C18119.0 (8)
O3—Cd1—N2154.27 (14)C16—N6—C17122.1 (7)
O1—Cd1—O4132.81 (14)C18—N6—C17118.8 (7)
O2—Cd1—O483.67 (14)N4—C15—C14123.3 (5)
N4—Cd1—O484.38 (16)N4—C15—H15118.3
O3—Cd1—O451.27 (14)C14—C15—H15118.3
N2—Cd1—O4152.53 (14)C15—C14—C13120.8 (5)
O1—Cd1—S1i99.58 (10)C15—C14—H14119.6
O2—Cd1—S1i94.80 (10)C13—C14—H14119.6
N4—Cd1—S1i171.58 (11)O7—C16—N6126.0 (6)
O3—Cd1—S1i90.91 (14)O7—C16—H16117.0
N2—Cd1—S1i98.16 (10)N6—C16—H16117.0
O4—Cd1—S1i87.47 (12)N4—C11—C12122.8 (6)
C11—N4—C15116.7 (5)N4—C11—H11118.6
C11—N4—Cd1120.1 (4)C12—C11—H11118.6
C15—N4—Cd1122.1 (4)C13—C12—C11121.1 (5)
C4—O2—Cd1117.7 (3)C13—C12—H12119.5
O2—C4—N3122.0 (5)C11—C12—H12119.5
O2—C4—C5121.0 (5)N6—C17—H17A109.5
N3—C4—C5117.0 (5)N6—C17—H17B109.5
C3—N2—N3114.0 (4)H17A—C17—H17B109.5
C3—N2—Cd1133.8 (3)N6—C17—H17C109.5
N3—N2—Cd1110.3 (3)H17A—C17—H17C109.5
O6—C6—C5118.2 (5)H17B—C17—H17C109.5
O6—C6—C7121.3 (7)N6—C18—H18A109.5
C5—C6—C7120.4 (6)N6—C18—H18B109.5
N5—O4—Cd192.1 (3)H18A—C18—H18B109.5
C10—C5—C6117.7 (6)N6—C18—H18C109.5
C10—C5—C4116.4 (6)H18A—C18—H18C109.5
C6—C5—C4125.9 (5)H18B—C18—H18C109.5
C6—O6—H6109.5C2—C1—H1A109.5
O5—N5—O4123.0 (6)C2—C1—H1B109.5
O5—N5—O3119.6 (6)H1A—C1—H1B109.5
O4—N5—O3117.4 (5)C2—C1—H1C109.5
N5—O3—Cd199.2 (3)H1A—C1—H1C109.5
C8—C7—C6120.5 (8)H1B—C1—H1C109.5
C8—C7—H7119.8C3—S1—Cd1i97.32 (16)
C6—C7—H7119.8C19—N7—C20120.1 (10)
C9—C10—C5121.1 (8)C19—N7—C21119.3 (9)
C9—C10—H10119.4C20—N7—C21120.4 (10)
C5—C10—H10119.4N7—C20—H20A109.5
C7—C8—C9119.8 (7)N7—C20—H20B109.5
C7—C8—H8120.1H20A—C20—H20B109.5
C9—C8—H8120.1N7—C20—H20C109.5
C8—C9—C10120.6 (8)H20A—C20—H20C109.5
C8—C9—H9119.7H20B—C20—H20C109.5
C10—C9—H9119.7N7—C21—H21A109.5
C2—O1—Cd1136.2 (4)N7—C21—H21B109.5
C2—N1—C3130.9 (4)H21A—C21—H21B109.5
C2—N1—H1114.6N7—C21—H21C109.5
C3—N1—H1114.6H21A—C21—H21C109.5
C4—N3—N2120.1 (4)H21B—C21—H21C109.5
C4—N3—H3119.9O8—C19—N7126.4 (11)
N2—N3—H3119.9O8—C19—H19116.8
N2—C3—N1118.1 (5)N7—C19—H19116.8
D—H···AD—HH···AD···AD—H···A
N1—H1···O7i0.862.012.871 (6)174
N3—H3···O60.861.962.619 (6)133
N3—H3···S10.862.462.901 (4)113
O6—H6···O8iii0.821.702.502 (9)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O7i 0.862.012.871 (6)174
N3—H3⋯O60.861.962.619 (6)133
O6—H6⋯O8ii 0.821.702.502 (9)164

Symmetry codes: (i) ; (ii) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Di-μ2-chlorido-dichloridobis(dimethylformamide)tetrakis[μ3-1-(2-oxidobenzoyl)-2-(2-oxo-2-phenylethanethioyl)hydrazine-1,2-diido]octacopper(II) dimethylformamide disolvate.

Authors:  Jian-Jun Liu; Jian-Zhen Liao; Zuo-Yin Li; Yao Wang; Chang-Cang Huang
Journal:  Acta Crystallogr C       Date:  2013-05-17       Impact factor: 1.172

5.  Poly[bis(mu-4-benzoyl-1-isonicotinoylthiosemicarbazide-kappa2N:S)dichloridocadmium(II)].

Authors:  Yu-Bo Wang; Tong-Hen Pan; Qian Liang; Dong-Sheng Liu; Chang-Cang Huang
Journal:  Acta Crystallogr C       Date:  2010-04-13       Impact factor: 1.172

6.  Synthesis and structural investigation of mono- and polynuclear copper complexes of 4-ethyl-1-(pyridin-2-yl) thiosemicarbazide.

Authors:  M M Hassanien; I M Gabr; M H Abdel-Rhman; A A El-Asmy
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2007-11-22       Impact factor: 4.098

7.  Synthesis, structural characterization and antimicrobial activities of 12 zinc(II) complexes with four thiosemicarbazone and two semicarbazone ligands.

Authors:  Noriko Chikaraishi Kasuga; Kiyoshi Sekino; Motoki Ishikawa; Ayano Honda; Masaki Yokoyama; Saori Nakano; Nobuhiro Shimada; Chisa Koumo; Kenji Nomiya
Journal:  J Inorg Biochem       Date:  2003-08-01       Impact factor: 4.155

  7 in total

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